Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00292

Experiment: PYE with Cisplatin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00291 and CCNA_00292 are separated by 144 nucleotidesCCNA_00292 and CCNA_00293 overlap by 8 nucleotides CCNA_00291: CCNA_00291 - phosphate regulon sensor protein phoR, at 304,469 to 305,884 _00291 CCNA_00292: CCNA_00292 - phosphate transport system permease protein pstC, at 306,029 to 307,462 _00292 CCNA_00293: CCNA_00293 - phosphate transport system permease protein pstA, at 307,455 to 308,750 _00293 Position (kb) 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 305.033 kb on - strand, within CCNA_00291at 305.051 kb on - strand, within CCNA_00291at 305.097 kb on + strand, within CCNA_00291at 305.097 kb on + strand, within CCNA_00291at 305.097 kb on + strand, within CCNA_00291at 305.105 kb on - strand, within CCNA_00291at 305.155 kb on - strand, within CCNA_00291at 305.158 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.169 kb on + strand, within CCNA_00291at 305.177 kb on - strand, within CCNA_00291at 305.177 kb on - strand, within CCNA_00291at 305.189 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.206 kb on + strand, within CCNA_00291at 305.214 kb on - strand, within CCNA_00291at 305.262 kb on - strand, within CCNA_00291at 305.269 kb on + strand, within CCNA_00291at 305.305 kb on + strand, within CCNA_00291at 305.305 kb on + strand, within CCNA_00291at 305.305 kb on + strand, within CCNA_00291at 305.310 kb on - strand, within CCNA_00291at 305.313 kb on - strand, within CCNA_00291at 305.334 kb on + strand, within CCNA_00291at 305.342 kb on - strand, within CCNA_00291at 305.342 kb on - strand, within CCNA_00291at 305.360 kb on + strand, within CCNA_00291at 305.381 kb on - strand, within CCNA_00291at 305.402 kb on + strand, within CCNA_00291at 305.402 kb on + strand, within CCNA_00291at 305.404 kb on + strand, within CCNA_00291at 305.412 kb on - strand, within CCNA_00291at 305.503 kb on - strand, within CCNA_00291at 305.577 kb on - strand, within CCNA_00291at 305.633 kb on + strand, within CCNA_00291at 305.687 kb on + strand, within CCNA_00291at 305.717 kb on + strand, within CCNA_00291at 305.717 kb on + strand, within CCNA_00291at 305.719 kb on - strandat 305.725 kb on - strand, within CCNA_00291at 305.728 kb on + strand, within CCNA_00291at 305.762 kb on + strandat 305.783 kb on + strandat 305.783 kb on + strandat 305.783 kb on + strandat 305.796 kb on - strandat 305.807 kb on + strandat 305.824 kb on + strandat 305.832 kb on - strandat 305.921 kb on + strandat 305.921 kb on + strandat 305.936 kb on + strandat 305.944 kb on - strandat 305.964 kb on - strandat 305.995 kb on + strandat 306.003 kb on - strandat 306.014 kb on + strandat 306.014 kb on + strandat 306.014 kb on + strandat 306.015 kb on + strandat 306.022 kb on - strandat 306.022 kb on - strandat 306.072 kb on - strandat 306.100 kb on + strandat 306.151 kb on + strandat 306.424 kb on + strand, within CCNA_00292at 306.471 kb on + strand, within CCNA_00292at 306.476 kb on + strand, within CCNA_00292at 306.476 kb on + strand, within CCNA_00292at 306.998 kb on + strand, within CCNA_00292at 307.414 kb on - strandat 307.441 kb on - strandat 307.451 kb on - strandat 307.547 kb on + strandat 307.735 kb on + strandat 307.871 kb on + strand, within CCNA_00293at 307.984 kb on + strandat 308.038 kb on + strand, within CCNA_00293

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Cisplatin 0.005 mg/ml
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305,033 - CCNA_00291 0.40 -0.1
305,051 - CCNA_00291 0.41 -1.0
305,097 + CCNA_00291 0.44 +0.1
305,097 + CCNA_00291 0.44 +0.3
305,097 + CCNA_00291 0.44 +0.2
305,105 - CCNA_00291 0.45 +0.1
305,155 - CCNA_00291 0.48 +0.8
305,158 + CCNA_00291 0.49 +0.8
305,169 + CCNA_00291 0.49 +0.3
305,169 + CCNA_00291 0.49 +0.4
305,169 + CCNA_00291 0.49 +0.4
305,169 + CCNA_00291 0.49 +0.7
305,169 + CCNA_00291 0.49 +0.3
305,169 + CCNA_00291 0.49 -0.5
305,177 - CCNA_00291 0.50 -0.3
305,177 - CCNA_00291 0.50 +0.4
305,189 + CCNA_00291 0.51 +1.2
305,206 + CCNA_00291 0.52 +1.2
305,206 + CCNA_00291 0.52 +0.1
305,206 + CCNA_00291 0.52 +1.4
305,206 + CCNA_00291 0.52 -0.1
305,206 + CCNA_00291 0.52 -0.6
305,214 - CCNA_00291 0.53 -0.5
305,262 - CCNA_00291 0.56 +0.2
305,269 + CCNA_00291 0.56 -0.3
305,305 + CCNA_00291 0.59 +0.0
305,305 + CCNA_00291 0.59 -0.8
305,305 + CCNA_00291 0.59 -0.9
305,310 - CCNA_00291 0.59 +1.2
305,313 - CCNA_00291 0.60 -3.2
305,334 + CCNA_00291 0.61 -0.5
305,342 - CCNA_00291 0.62 -1.0
305,342 - CCNA_00291 0.62 +2.1
305,360 + CCNA_00291 0.63 +0.9
305,381 - CCNA_00291 0.64 +1.8
305,402 + CCNA_00291 0.66 -1.6
305,402 + CCNA_00291 0.66 +0.6
305,404 + CCNA_00291 0.66 -0.3
305,412 - CCNA_00291 0.67 +1.4
305,503 - CCNA_00291 0.73 +1.1
305,577 - CCNA_00291 0.78 +1.3
305,633 + CCNA_00291 0.82 +1.5
305,687 + CCNA_00291 0.86 +0.7
305,717 + CCNA_00291 0.88 +2.4
305,717 + CCNA_00291 0.88 +1.5
305,719 - -0.1
305,725 - CCNA_00291 0.89 +1.1
305,728 + CCNA_00291 0.89 +1.0
305,762 + +0.3
305,783 + +1.2
305,783 + +1.5
305,783 + +1.8
305,796 - -1.3
305,807 + -0.1
305,824 + -0.4
305,832 - -0.7
305,921 + +0.9
305,921 + +2.2
305,936 + +0.9
305,944 - -0.9
305,964 - +0.8
305,995 + +1.3
306,003 - -1.2
306,014 + +0.1
306,014 + +0.6
306,014 + -3.2
306,015 + +1.8
306,022 - +1.4
306,022 - -2.4
306,072 - -1.8
306,100 + +1.5
306,151 + +1.2
306,424 + CCNA_00292 0.28 +2.1
306,471 + CCNA_00292 0.31 +1.5
306,476 + CCNA_00292 0.31 -0.1
306,476 + CCNA_00292 0.31 +2.3
306,998 + CCNA_00292 0.68 +0.6
307,414 - +0.6
307,441 - +1.9
307,451 - +1.7
307,547 + +1.9
307,735 + +1.5
307,871 + CCNA_00293 0.32 +2.0
307,984 + +1.9
308,038 + CCNA_00293 0.45 +3.5

Or see this region's nucleotide sequence