Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22580 and ABZR87_RS22585 are separated by 11 nucleotides ABZR87_RS22585 and ABZR87_RS22590 overlap by 1 nucleotides ABZR87_RS22590 and ABZR87_RS22595 are separated by 469 nucleotides ABZR87_RS22595 and ABZR87_RS22600 are separated by 77 nucleotides
ABZR87_RS22580: ABZR87_RS22580 - hypothetical protein, at 1,422,296 to 1,422,829
_RS22580
ABZR87_RS22585: ABZR87_RS22585 - methyl-accepting chemotaxis protein, at 1,422,841 to 1,423,557
_RS22585
ABZR87_RS22590: ABZR87_RS22590 - ATP-binding protein, at 1,423,557 to 1,425,941
_RS22590
ABZR87_RS22595: ABZR87_RS22595 - DUF1801 domain-containing protein, at 1,426,411 to 1,426,803
_RS22595
ABZR87_RS22600: ABZR87_RS22600 - DUF2322 family protein, at 1,426,881 to 1,427,213
_RS22600
Position (kb)
1423
1424
1425
1426 Strain fitness (log2 ratio)
-2
-1
0
1 at 1422.773 kb on - strand, within ABZR87_RS22580 at 1422.843 kb on - strand at 1423.296 kb on + strand, within ABZR87_RS22585 at 1423.390 kb on - strand, within ABZR87_RS22585 at 1423.819 kb on + strand, within ABZR87_RS22590 at 1423.819 kb on + strand, within ABZR87_RS22590 at 1423.819 kb on + strand, within ABZR87_RS22590 at 1423.819 kb on + strand, within ABZR87_RS22590 at 1423.820 kb on - strand, within ABZR87_RS22590 at 1423.820 kb on - strand, within ABZR87_RS22590 at 1424.196 kb on + strand, within ABZR87_RS22590 at 1424.196 kb on + strand, within ABZR87_RS22590 at 1424.197 kb on - strand, within ABZR87_RS22590 at 1424.197 kb on - strand, within ABZR87_RS22590 at 1424.491 kb on + strand, within ABZR87_RS22590 at 1424.491 kb on + strand, within ABZR87_RS22590 at 1424.492 kb on - strand, within ABZR87_RS22590 at 1424.539 kb on + strand, within ABZR87_RS22590 at 1424.614 kb on + strand, within ABZR87_RS22590 at 1424.615 kb on - strand, within ABZR87_RS22590 at 1424.988 kb on - strand, within ABZR87_RS22590 at 1424.988 kb on - strand, within ABZR87_RS22590 at 1425.055 kb on + strand, within ABZR87_RS22590 at 1425.055 kb on + strand, within ABZR87_RS22590 at 1425.326 kb on - strand, within ABZR87_RS22590 at 1425.493 kb on + strand, within ABZR87_RS22590 at 1425.583 kb on + strand, within ABZR87_RS22590 at 1425.583 kb on + strand, within ABZR87_RS22590 at 1425.583 kb on + strand, within ABZR87_RS22590 at 1425.583 kb on + strand, within ABZR87_RS22590 at 1425.583 kb on + strand, within ABZR87_RS22590 at 1425.736 kb on + strand at 1425.736 kb on + strand at 1425.736 kb on + strand at 1425.736 kb on + strand at 1425.737 kb on - strand at 1425.737 kb on - strand at 1425.737 kb on - strand at 1425.737 kb on - strand at 1425.737 kb on - strand at 1425.737 kb on - strand at 1425.737 kb on - strand at 1425.863 kb on - strand at 1425.863 kb on - strand at 1425.871 kb on + strand at 1425.920 kb on + strand at 1425.920 kb on + strand at 1425.920 kb on + strand at 1425.920 kb on + strand at 1425.921 kb on - strand at 1425.989 kb on - strand at 1426.158 kb on + strand at 1426.609 kb on + strand, within ABZR87_RS22595 at 1426.609 kb on + strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.610 kb on - strand, within ABZR87_RS22595 at 1426.846 kb on + strand at 1426.847 kb on - strand at 1426.900 kb on + strand at 1426.900 kb on + strand at 1426.900 kb on + strand at 1426.900 kb on + strand at 1426.901 kb on - strand at 1426.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 1,422,773 - ABZR87_RS22580 0.89 -0.5 1,422,843 - -1.1 1,423,296 + ABZR87_RS22585 0.63 +0.1 1,423,390 - ABZR87_RS22585 0.77 -2.3 1,423,819 + ABZR87_RS22590 0.11 +0.6 1,423,819 + ABZR87_RS22590 0.11 -0.7 1,423,819 + ABZR87_RS22590 0.11 +0.3 1,423,819 + ABZR87_RS22590 0.11 -0.8 1,423,820 - ABZR87_RS22590 0.11 -1.3 1,423,820 - ABZR87_RS22590 0.11 +0.0 1,424,196 + ABZR87_RS22590 0.27 -1.3 1,424,196 + ABZR87_RS22590 0.27 +1.4 1,424,197 - ABZR87_RS22590 0.27 +0.5 1,424,197 - ABZR87_RS22590 0.27 -2.0 1,424,491 + ABZR87_RS22590 0.39 -0.8 1,424,491 + ABZR87_RS22590 0.39 +0.2 1,424,492 - ABZR87_RS22590 0.39 +0.3 1,424,539 + ABZR87_RS22590 0.41 +0.7 1,424,614 + ABZR87_RS22590 0.44 -0.3 1,424,615 - ABZR87_RS22590 0.44 +0.9 1,424,988 - ABZR87_RS22590 0.60 -2.4 1,424,988 - ABZR87_RS22590 0.60 +0.1 1,425,055 + ABZR87_RS22590 0.63 -1.2 1,425,055 + ABZR87_RS22590 0.63 -0.1 1,425,326 - ABZR87_RS22590 0.74 +0.7 1,425,493 + ABZR87_RS22590 0.81 +0.1 1,425,583 + ABZR87_RS22590 0.85 +1.0 1,425,583 + ABZR87_RS22590 0.85 -0.7 1,425,583 + ABZR87_RS22590 0.85 -0.3 1,425,583 + ABZR87_RS22590 0.85 -0.2 1,425,583 + ABZR87_RS22590 0.85 +0.3 1,425,736 + -0.4 1,425,736 + -0.9 1,425,736 + -1.3 1,425,736 + +0.8 1,425,737 - -2.4 1,425,737 - +0.5 1,425,737 - -0.6 1,425,737 - -0.7 1,425,737 - -0.0 1,425,737 - +0.4 1,425,737 - -0.4 1,425,863 - -0.1 1,425,863 - -0.4 1,425,871 + -0.5 1,425,920 + -0.1 1,425,920 + +0.6 1,425,920 + -0.0 1,425,920 + -0.5 1,425,921 - +1.1 1,425,989 - +0.2 1,426,158 + -0.9 1,426,609 + ABZR87_RS22595 0.50 +0.9 1,426,609 + ABZR87_RS22595 0.50 +0.5 1,426,610 - ABZR87_RS22595 0.51 -0.8 1,426,610 - ABZR87_RS22595 0.51 -0.2 1,426,610 - ABZR87_RS22595 0.51 -0.1 1,426,610 - ABZR87_RS22595 0.51 -0.2 1,426,610 - ABZR87_RS22595 0.51 -0.2 1,426,610 - ABZR87_RS22595 0.51 -0.6 1,426,610 - ABZR87_RS22595 0.51 +1.4 1,426,610 - ABZR87_RS22595 0.51 +0.0 1,426,846 + +0.7 1,426,847 - +0.2 1,426,900 + -2.6 1,426,900 + +0.4 1,426,900 + -0.7 1,426,900 + -0.2 1,426,901 - +0.6 1,426,901 - +1.4
Or see this region's nucleotide sequence