Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22590

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22580 and ABZR87_RS22585 are separated by 11 nucleotidesABZR87_RS22585 and ABZR87_RS22590 overlap by 1 nucleotidesABZR87_RS22590 and ABZR87_RS22595 are separated by 469 nucleotidesABZR87_RS22595 and ABZR87_RS22600 are separated by 77 nucleotides ABZR87_RS22580: ABZR87_RS22580 - hypothetical protein, at 1,422,296 to 1,422,829 _RS22580 ABZR87_RS22585: ABZR87_RS22585 - methyl-accepting chemotaxis protein, at 1,422,841 to 1,423,557 _RS22585 ABZR87_RS22590: ABZR87_RS22590 - ATP-binding protein, at 1,423,557 to 1,425,941 _RS22590 ABZR87_RS22595: ABZR87_RS22595 - DUF1801 domain-containing protein, at 1,426,411 to 1,426,803 _RS22595 ABZR87_RS22600: ABZR87_RS22600 - DUF2322 family protein, at 1,426,881 to 1,427,213 _RS22600 Position (kb) 1423 1424 1425 1426Strain fitness (log2 ratio) -2 -1 0 1at 1422.773 kb on - strand, within ABZR87_RS22580at 1422.843 kb on - strandat 1423.296 kb on + strand, within ABZR87_RS22585at 1423.390 kb on - strand, within ABZR87_RS22585at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.819 kb on + strand, within ABZR87_RS22590at 1423.820 kb on - strand, within ABZR87_RS22590at 1423.820 kb on - strand, within ABZR87_RS22590at 1424.196 kb on + strand, within ABZR87_RS22590at 1424.196 kb on + strand, within ABZR87_RS22590at 1424.197 kb on - strand, within ABZR87_RS22590at 1424.197 kb on - strand, within ABZR87_RS22590at 1424.491 kb on + strand, within ABZR87_RS22590at 1424.491 kb on + strand, within ABZR87_RS22590at 1424.492 kb on - strand, within ABZR87_RS22590at 1424.539 kb on + strand, within ABZR87_RS22590at 1424.614 kb on + strand, within ABZR87_RS22590at 1424.615 kb on - strand, within ABZR87_RS22590at 1424.988 kb on - strand, within ABZR87_RS22590at 1424.988 kb on - strand, within ABZR87_RS22590at 1425.055 kb on + strand, within ABZR87_RS22590at 1425.055 kb on + strand, within ABZR87_RS22590at 1425.326 kb on - strand, within ABZR87_RS22590at 1425.493 kb on + strand, within ABZR87_RS22590at 1425.583 kb on + strand, within ABZR87_RS22590at 1425.583 kb on + strand, within ABZR87_RS22590at 1425.583 kb on + strand, within ABZR87_RS22590at 1425.583 kb on + strand, within ABZR87_RS22590at 1425.583 kb on + strand, within ABZR87_RS22590at 1425.736 kb on + strandat 1425.736 kb on + strandat 1425.736 kb on + strandat 1425.736 kb on + strandat 1425.737 kb on - strandat 1425.737 kb on - strandat 1425.737 kb on - strandat 1425.737 kb on - strandat 1425.737 kb on - strandat 1425.737 kb on - strandat 1425.737 kb on - strandat 1425.863 kb on - strandat 1425.863 kb on - strandat 1425.871 kb on + strandat 1425.920 kb on + strandat 1425.920 kb on + strandat 1425.920 kb on + strandat 1425.920 kb on + strandat 1425.921 kb on - strandat 1425.989 kb on - strandat 1426.158 kb on + strandat 1426.609 kb on + strand, within ABZR87_RS22595at 1426.609 kb on + strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.610 kb on - strand, within ABZR87_RS22595at 1426.846 kb on + strandat 1426.847 kb on - strandat 1426.900 kb on + strandat 1426.900 kb on + strandat 1426.900 kb on + strandat 1426.900 kb on + strandat 1426.901 kb on - strandat 1426.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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1,422,773 - ABZR87_RS22580 0.89 -0.5
1,422,843 - -1.1
1,423,296 + ABZR87_RS22585 0.63 +0.1
1,423,390 - ABZR87_RS22585 0.77 -2.3
1,423,819 + ABZR87_RS22590 0.11 +0.6
1,423,819 + ABZR87_RS22590 0.11 -0.7
1,423,819 + ABZR87_RS22590 0.11 +0.3
1,423,819 + ABZR87_RS22590 0.11 -0.8
1,423,820 - ABZR87_RS22590 0.11 -1.3
1,423,820 - ABZR87_RS22590 0.11 +0.0
1,424,196 + ABZR87_RS22590 0.27 -1.3
1,424,196 + ABZR87_RS22590 0.27 +1.4
1,424,197 - ABZR87_RS22590 0.27 +0.5
1,424,197 - ABZR87_RS22590 0.27 -2.0
1,424,491 + ABZR87_RS22590 0.39 -0.8
1,424,491 + ABZR87_RS22590 0.39 +0.2
1,424,492 - ABZR87_RS22590 0.39 +0.3
1,424,539 + ABZR87_RS22590 0.41 +0.7
1,424,614 + ABZR87_RS22590 0.44 -0.3
1,424,615 - ABZR87_RS22590 0.44 +0.9
1,424,988 - ABZR87_RS22590 0.60 -2.4
1,424,988 - ABZR87_RS22590 0.60 +0.1
1,425,055 + ABZR87_RS22590 0.63 -1.2
1,425,055 + ABZR87_RS22590 0.63 -0.1
1,425,326 - ABZR87_RS22590 0.74 +0.7
1,425,493 + ABZR87_RS22590 0.81 +0.1
1,425,583 + ABZR87_RS22590 0.85 +1.0
1,425,583 + ABZR87_RS22590 0.85 -0.7
1,425,583 + ABZR87_RS22590 0.85 -0.3
1,425,583 + ABZR87_RS22590 0.85 -0.2
1,425,583 + ABZR87_RS22590 0.85 +0.3
1,425,736 + -0.4
1,425,736 + -0.9
1,425,736 + -1.3
1,425,736 + +0.8
1,425,737 - -2.4
1,425,737 - +0.5
1,425,737 - -0.6
1,425,737 - -0.7
1,425,737 - -0.0
1,425,737 - +0.4
1,425,737 - -0.4
1,425,863 - -0.1
1,425,863 - -0.4
1,425,871 + -0.5
1,425,920 + -0.1
1,425,920 + +0.6
1,425,920 + -0.0
1,425,920 + -0.5
1,425,921 - +1.1
1,425,989 - +0.2
1,426,158 + -0.9
1,426,609 + ABZR87_RS22595 0.50 +0.9
1,426,609 + ABZR87_RS22595 0.50 +0.5
1,426,610 - ABZR87_RS22595 0.51 -0.8
1,426,610 - ABZR87_RS22595 0.51 -0.2
1,426,610 - ABZR87_RS22595 0.51 -0.1
1,426,610 - ABZR87_RS22595 0.51 -0.2
1,426,610 - ABZR87_RS22595 0.51 -0.2
1,426,610 - ABZR87_RS22595 0.51 -0.6
1,426,610 - ABZR87_RS22595 0.51 +1.4
1,426,610 - ABZR87_RS22595 0.51 +0.0
1,426,846 + +0.7
1,426,847 - +0.2
1,426,900 + -2.6
1,426,900 + +0.4
1,426,900 + -0.7
1,426,900 + -0.2
1,426,901 - +0.6
1,426,901 - +1.4

Or see this region's nucleotide sequence