Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22575

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22565 and ABZR87_RS22570 are separated by 12 nucleotidesABZR87_RS22570 and ABZR87_RS22575 are separated by 117 nucleotidesABZR87_RS22575 and ABZR87_RS22580 are separated by 32 nucleotidesABZR87_RS22580 and ABZR87_RS22585 are separated by 11 nucleotides ABZR87_RS22565: ABZR87_RS22565 - class I SAM-dependent methyltransferase, at 1,420,575 to 1,421,435 _RS22565 ABZR87_RS22570: ABZR87_RS22570 - hypothetical protein, at 1,421,448 to 1,421,780 _RS22570 ABZR87_RS22575: ABZR87_RS22575 - response regulator, at 1,421,898 to 1,422,263 _RS22575 ABZR87_RS22580: ABZR87_RS22580 - hypothetical protein, at 1,422,296 to 1,422,829 _RS22580 ABZR87_RS22585: ABZR87_RS22585 - methyl-accepting chemotaxis protein, at 1,422,841 to 1,423,557 _RS22585 Position (kb) 1421 1422 1423Strain fitness (log2 ratio) -3 -2 -1 0 1at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.100 kb on + strand, within ABZR87_RS22565at 1421.101 kb on - strand, within ABZR87_RS22565at 1421.101 kb on - strand, within ABZR87_RS22565at 1421.101 kb on - strand, within ABZR87_RS22565at 1421.101 kb on - strand, within ABZR87_RS22565at 1421.101 kb on - strand, within ABZR87_RS22565at 1421.280 kb on - strand, within ABZR87_RS22565at 1421.280 kb on - strand, within ABZR87_RS22565at 1421.364 kb on + strandat 1421.365 kb on - strandat 1421.433 kb on + strandat 1421.433 kb on + strandat 1421.434 kb on - strandat 1421.542 kb on + strand, within ABZR87_RS22570at 1421.542 kb on + strand, within ABZR87_RS22570at 1421.542 kb on + strand, within ABZR87_RS22570at 1421.542 kb on + strand, within ABZR87_RS22570at 1421.542 kb on + strand, within ABZR87_RS22570at 1421.542 kb on + strand, within ABZR87_RS22570at 1421.543 kb on - strand, within ABZR87_RS22570at 1421.543 kb on - strand, within ABZR87_RS22570at 1421.543 kb on - strand, within ABZR87_RS22570at 1421.543 kb on - strand, within ABZR87_RS22570at 1421.602 kb on + strand, within ABZR87_RS22570at 1421.636 kb on + strand, within ABZR87_RS22570at 1421.636 kb on + strand, within ABZR87_RS22570at 1421.638 kb on + strand, within ABZR87_RS22570at 1421.638 kb on + strand, within ABZR87_RS22570at 1421.638 kb on + strand, within ABZR87_RS22570at 1421.638 kb on + strand, within ABZR87_RS22570at 1421.638 kb on + strand, within ABZR87_RS22570at 1421.639 kb on - strand, within ABZR87_RS22570at 1421.639 kb on - strand, within ABZR87_RS22570at 1421.639 kb on - strand, within ABZR87_RS22570at 1421.639 kb on - strand, within ABZR87_RS22570at 1421.750 kb on - strandat 1422.267 kb on + strandat 1422.268 kb on - strandat 1422.268 kb on - strandat 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.486 kb on + strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.487 kb on - strand, within ABZR87_RS22580at 1422.773 kb on - strand, within ABZR87_RS22580at 1422.843 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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1,421,100 + ABZR87_RS22565 0.61 -0.6
1,421,100 + ABZR87_RS22565 0.61 -0.2
1,421,100 + ABZR87_RS22565 0.61 +0.1
1,421,100 + ABZR87_RS22565 0.61 +0.5
1,421,100 + ABZR87_RS22565 0.61 +0.2
1,421,100 + ABZR87_RS22565 0.61 -0.4
1,421,100 + ABZR87_RS22565 0.61 +0.1
1,421,100 + ABZR87_RS22565 0.61 -1.1
1,421,100 + ABZR87_RS22565 0.61 -0.4
1,421,101 - ABZR87_RS22565 0.61 +1.1
1,421,101 - ABZR87_RS22565 0.61 -1.1
1,421,101 - ABZR87_RS22565 0.61 +1.3
1,421,101 - ABZR87_RS22565 0.61 +0.7
1,421,101 - ABZR87_RS22565 0.61 -0.5
1,421,280 - ABZR87_RS22565 0.82 -0.3
1,421,280 - ABZR87_RS22565 0.82 +0.5
1,421,364 + +0.2
1,421,365 - -1.7
1,421,433 + -1.0
1,421,433 + -0.6
1,421,434 - -0.2
1,421,542 + ABZR87_RS22570 0.28 -0.4
1,421,542 + ABZR87_RS22570 0.28 +1.0
1,421,542 + ABZR87_RS22570 0.28 -0.6
1,421,542 + ABZR87_RS22570 0.28 -0.2
1,421,542 + ABZR87_RS22570 0.28 -0.5
1,421,542 + ABZR87_RS22570 0.28 -1.0
1,421,543 - ABZR87_RS22570 0.29 +0.4
1,421,543 - ABZR87_RS22570 0.29 -1.3
1,421,543 - ABZR87_RS22570 0.29 -0.3
1,421,543 - ABZR87_RS22570 0.29 +0.0
1,421,602 + ABZR87_RS22570 0.46 +0.8
1,421,636 + ABZR87_RS22570 0.56 +1.2
1,421,636 + ABZR87_RS22570 0.56 -0.4
1,421,638 + ABZR87_RS22570 0.57 +0.0
1,421,638 + ABZR87_RS22570 0.57 +0.6
1,421,638 + ABZR87_RS22570 0.57 -0.4
1,421,638 + ABZR87_RS22570 0.57 +0.9
1,421,638 + ABZR87_RS22570 0.57 -2.5
1,421,639 - ABZR87_RS22570 0.57 +0.4
1,421,639 - ABZR87_RS22570 0.57 +0.9
1,421,639 - ABZR87_RS22570 0.57 -1.4
1,421,639 - ABZR87_RS22570 0.57 +0.7
1,421,750 - -0.6
1,422,267 + -3.1
1,422,268 - +0.7
1,422,268 - -2.4
1,422,486 + ABZR87_RS22580 0.36 -0.6
1,422,486 + ABZR87_RS22580 0.36 -2.2
1,422,486 + ABZR87_RS22580 0.36 -1.0
1,422,486 + ABZR87_RS22580 0.36 +1.5
1,422,486 + ABZR87_RS22580 0.36 +1.2
1,422,487 - ABZR87_RS22580 0.36 -0.7
1,422,487 - ABZR87_RS22580 0.36 -0.0
1,422,487 - ABZR87_RS22580 0.36 -1.5
1,422,487 - ABZR87_RS22580 0.36 -0.1
1,422,773 - ABZR87_RS22580 0.89 -0.5
1,422,843 - -1.1

Or see this region's nucleotide sequence