Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22135 and ABZR87_RS22140 are separated by 18 nucleotides ABZR87_RS22140 and ABZR87_RS22145 are separated by 155 nucleotides ABZR87_RS22145 and ABZR87_RS22150 are separated by 76 nucleotides ABZR87_RS22150 and ABZR87_RS22155 overlap by 4 nucleotides
ABZR87_RS22135: ABZR87_RS22135 - glycosyltransferase family A protein, at 1,332,754 to 1,334,028
_RS22135
ABZR87_RS22140: ABZR87_RS22140 - flagellar hook-basal body complex protein FliE, at 1,334,047 to 1,334,373
_RS22140
ABZR87_RS22145: ABZR87_RS22145 - organic hydroperoxide resistance protein, at 1,334,529 to 1,334,951
_RS22145
ABZR87_RS22150: ABZR87_RS22150 - MarR family transcriptional regulator, at 1,335,028 to 1,335,471
_RS22150
ABZR87_RS22155: ABZR87_RS22155 - glycosyltransferase, at 1,335,468 to 1,336,550
_RS22155
Position (kb)
1335
1336 Strain fitness (log2 ratio)
-2
-1
0
1 at 1334.345 kb on - strand at 1334.514 kb on + strand at 1334.514 kb on + strand at 1334.542 kb on - strand at 1334.887 kb on + strand, within ABZR87_RS22145 at 1334.887 kb on + strand, within ABZR87_RS22145 at 1334.887 kb on + strand, within ABZR87_RS22145 at 1334.887 kb on + strand, within ABZR87_RS22145 at 1334.888 kb on - strand, within ABZR87_RS22145 at 1334.888 kb on - strand, within ABZR87_RS22145 at 1334.888 kb on - strand, within ABZR87_RS22145 at 1334.888 kb on - strand, within ABZR87_RS22145 at 1334.888 kb on - strand, within ABZR87_RS22145 at 1334.918 kb on + strand at 1334.919 kb on - strand at 1334.919 kb on - strand at 1334.919 kb on - strand at 1334.919 kb on - strand at 1335.073 kb on + strand, within ABZR87_RS22150 at 1335.073 kb on + strand, within ABZR87_RS22150 at 1335.073 kb on + strand, within ABZR87_RS22150 at 1335.074 kb on - strand, within ABZR87_RS22150 at 1335.074 kb on - strand, within ABZR87_RS22150 at 1335.074 kb on - strand, within ABZR87_RS22150 at 1335.074 kb on - strand, within ABZR87_RS22150 at 1335.136 kb on + strand, within ABZR87_RS22150 at 1335.137 kb on - strand, within ABZR87_RS22150 at 1335.145 kb on + strand, within ABZR87_RS22150 at 1335.145 kb on + strand, within ABZR87_RS22150 at 1335.231 kb on + strand, within ABZR87_RS22150 at 1335.231 kb on + strand, within ABZR87_RS22150 at 1335.231 kb on + strand, within ABZR87_RS22150 at 1335.231 kb on + strand, within ABZR87_RS22150 at 1335.232 kb on - strand, within ABZR87_RS22150 at 1335.232 kb on - strand, within ABZR87_RS22150 at 1335.232 kb on - strand, within ABZR87_RS22150 at 1335.232 kb on - strand, within ABZR87_RS22150 at 1335.232 kb on - strand, within ABZR87_RS22150 at 1335.891 kb on + strand, within ABZR87_RS22155 at 1335.892 kb on - strand, within ABZR87_RS22155 at 1335.902 kb on + strand, within ABZR87_RS22155 at 1335.903 kb on - strand, within ABZR87_RS22155 at 1335.903 kb on - strand, within ABZR87_RS22155 at 1335.970 kb on - strand, within ABZR87_RS22155 at 1335.970 kb on - strand, within ABZR87_RS22155 at 1335.970 kb on - strand, within ABZR87_RS22155 at 1335.971 kb on + strand, within ABZR87_RS22155 at 1336.008 kb on - strand, within ABZR87_RS22155 at 1336.053 kb on + strand, within ABZR87_RS22155 at 1336.053 kb on + strand, within ABZR87_RS22155 at 1336.053 kb on + strand, within ABZR87_RS22155 at 1336.053 kb on + strand, within ABZR87_RS22155 at 1336.053 kb on + strand, within ABZR87_RS22155 at 1336.053 kb on + strand, within ABZR87_RS22155 at 1336.054 kb on - strand, within ABZR87_RS22155 at 1336.054 kb on - strand, within ABZR87_RS22155 at 1336.054 kb on - strand, within ABZR87_RS22155 at 1336.054 kb on - strand, within ABZR87_RS22155 at 1336.062 kb on + strand, within ABZR87_RS22155 at 1336.062 kb on + strand, within ABZR87_RS22155 at 1336.101 kb on + strand, within ABZR87_RS22155 at 1336.101 kb on + strand, within ABZR87_RS22155 at 1336.102 kb on - strand, within ABZR87_RS22155 at 1336.119 kb on + strand, within ABZR87_RS22155 at 1336.119 kb on + strand, within ABZR87_RS22155 at 1336.120 kb on - strand, within ABZR87_RS22155 at 1336.120 kb on - strand, within ABZR87_RS22155 at 1336.120 kb on - strand, within ABZR87_RS22155 at 1336.122 kb on + strand, within ABZR87_RS22155 at 1336.122 kb on + strand, within ABZR87_RS22155 at 1336.123 kb on - strand, within ABZR87_RS22155 at 1336.184 kb on + strand, within ABZR87_RS22155 at 1336.185 kb on + strand, within ABZR87_RS22155 at 1336.185 kb on + strand, within ABZR87_RS22155 at 1336.186 kb on - strand, within ABZR87_RS22155 at 1336.186 kb on - strand, within ABZR87_RS22155 at 1336.186 kb on - strand, within ABZR87_RS22155 at 1336.186 kb on - strand, within ABZR87_RS22155 at 1336.192 kb on - strand, within ABZR87_RS22155 at 1336.192 kb on - strand, within ABZR87_RS22155 at 1336.192 kb on - strand, within ABZR87_RS22155 at 1336.464 kb on + strand at 1336.465 kb on - strand at 1336.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 1,334,345 - +1.1 1,334,514 + +0.3 1,334,514 + -0.7 1,334,542 - +0.5 1,334,887 + ABZR87_RS22145 0.85 -0.0 1,334,887 + ABZR87_RS22145 0.85 -0.2 1,334,887 + ABZR87_RS22145 0.85 -0.8 1,334,887 + ABZR87_RS22145 0.85 +0.1 1,334,888 - ABZR87_RS22145 0.85 -0.1 1,334,888 - ABZR87_RS22145 0.85 -0.4 1,334,888 - ABZR87_RS22145 0.85 -0.8 1,334,888 - ABZR87_RS22145 0.85 +0.0 1,334,888 - ABZR87_RS22145 0.85 -0.1 1,334,918 + -0.6 1,334,919 - -0.3 1,334,919 - +0.8 1,334,919 - +0.6 1,334,919 - +0.9 1,335,073 + ABZR87_RS22150 0.10 -0.8 1,335,073 + ABZR87_RS22150 0.10 -0.2 1,335,073 + ABZR87_RS22150 0.10 -2.2 1,335,074 - ABZR87_RS22150 0.10 -2.7 1,335,074 - ABZR87_RS22150 0.10 -0.7 1,335,074 - ABZR87_RS22150 0.10 -0.3 1,335,074 - ABZR87_RS22150 0.10 -0.7 1,335,136 + ABZR87_RS22150 0.24 -0.4 1,335,137 - ABZR87_RS22150 0.25 -0.7 1,335,145 + ABZR87_RS22150 0.26 -0.8 1,335,145 + ABZR87_RS22150 0.26 -0.9 1,335,231 + ABZR87_RS22150 0.46 -1.8 1,335,231 + ABZR87_RS22150 0.46 -1.3 1,335,231 + ABZR87_RS22150 0.46 +0.2 1,335,231 + ABZR87_RS22150 0.46 -1.3 1,335,232 - ABZR87_RS22150 0.46 -0.1 1,335,232 - ABZR87_RS22150 0.46 -0.5 1,335,232 - ABZR87_RS22150 0.46 -1.5 1,335,232 - ABZR87_RS22150 0.46 -1.0 1,335,232 - ABZR87_RS22150 0.46 -0.7 1,335,891 + ABZR87_RS22155 0.39 -0.4 1,335,892 - ABZR87_RS22155 0.39 -0.2 1,335,902 + ABZR87_RS22155 0.40 -1.0 1,335,903 - ABZR87_RS22155 0.40 -2.6 1,335,903 - ABZR87_RS22155 0.40 -1.6 1,335,970 - ABZR87_RS22155 0.46 -0.1 1,335,970 - ABZR87_RS22155 0.46 +0.0 1,335,970 - ABZR87_RS22155 0.46 +0.5 1,335,971 + ABZR87_RS22155 0.46 +0.8 1,336,008 - ABZR87_RS22155 0.50 -0.3 1,336,053 + ABZR87_RS22155 0.54 +0.6 1,336,053 + ABZR87_RS22155 0.54 +1.1 1,336,053 + ABZR87_RS22155 0.54 -0.5 1,336,053 + ABZR87_RS22155 0.54 +1.2 1,336,053 + ABZR87_RS22155 0.54 -0.3 1,336,053 + ABZR87_RS22155 0.54 -2.4 1,336,054 - ABZR87_RS22155 0.54 +0.3 1,336,054 - ABZR87_RS22155 0.54 +0.1 1,336,054 - ABZR87_RS22155 0.54 +0.3 1,336,054 - ABZR87_RS22155 0.54 -0.3 1,336,062 + ABZR87_RS22155 0.55 +0.1 1,336,062 + ABZR87_RS22155 0.55 +1.0 1,336,101 + ABZR87_RS22155 0.58 -0.2 1,336,101 + ABZR87_RS22155 0.58 +1.5 1,336,102 - ABZR87_RS22155 0.59 -1.7 1,336,119 + ABZR87_RS22155 0.60 +0.0 1,336,119 + ABZR87_RS22155 0.60 +1.0 1,336,120 - ABZR87_RS22155 0.60 -0.8 1,336,120 - ABZR87_RS22155 0.60 -0.8 1,336,120 - ABZR87_RS22155 0.60 -1.2 1,336,122 + ABZR87_RS22155 0.60 +0.6 1,336,122 + ABZR87_RS22155 0.60 -0.5 1,336,123 - ABZR87_RS22155 0.60 -0.2 1,336,184 + ABZR87_RS22155 0.66 +0.2 1,336,185 + ABZR87_RS22155 0.66 -1.3 1,336,185 + ABZR87_RS22155 0.66 +1.0 1,336,186 - ABZR87_RS22155 0.66 +1.3 1,336,186 - ABZR87_RS22155 0.66 +0.3 1,336,186 - ABZR87_RS22155 0.66 +0.2 1,336,186 - ABZR87_RS22155 0.66 -1.3 1,336,192 - ABZR87_RS22155 0.67 -0.4 1,336,192 - ABZR87_RS22155 0.67 +0.2 1,336,192 - ABZR87_RS22155 0.67 -0.6 1,336,464 + -1.2 1,336,465 - -0.5 1,336,465 - +0.1
Or see this region's nucleotide sequence