Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21960

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 1; outgrowth in LB
1,298,836	+		ABZR87_RS21950	0.32	-3.2
1,298,836	+		ABZR87_RS21950	0.32	-3.1
1,298,837	-		ABZR87_RS21950	0.33	-1.2
1,298,837	-		ABZR87_RS21950	0.33	-1.8
1,298,837	-		ABZR87_RS21950	0.33	-0.5
1,298,896	+		ABZR87_RS21950	0.47	-2.3
1,298,896	+		ABZR87_RS21950	0.47	-1.8
1,299,099	-				-0.7
1,299,177	+				-0.3
1,299,177	+				-0.6
1,299,177	+				-1.9
1,299,178	-				-2.4
1,299,244	-		ABZR87_RS21955	0.12	-1.5
1,299,438	+		ABZR87_RS21955	0.46	+0.2
1,299,438	+		ABZR87_RS21955	0.46	-0.3
1,299,438	+		ABZR87_RS21955	0.46	-1.4
1,299,438	+		ABZR87_RS21955	0.46	-1.1
1,299,438	+		ABZR87_RS21955	0.46	-2.4
1,299,439	-		ABZR87_RS21955	0.47	-2.1
1,299,439	-		ABZR87_RS21955	0.47	-3.2
1,299,439	-		ABZR87_RS21955	0.47	-1.7
1,299,439	-		ABZR87_RS21955	0.47	-1.7
1,299,442	+		ABZR87_RS21955	0.47	-2.0
1,299,442	+		ABZR87_RS21955	0.47	-0.4
1,299,442	+		ABZR87_RS21955	0.47	+0.5
1,299,443	-		ABZR87_RS21955	0.47	-0.7
1,299,443	-		ABZR87_RS21955	0.47	-3.3
1,299,614	-		ABZR87_RS21955	0.78	-1.7
1,299,637	+		ABZR87_RS21955	0.82	-0.4
1,299,682	+		ABZR87_RS21955	0.90	-0.0
1,299,690	+				-2.3
1,299,690	+				+0.5
1,299,690	+				+1.9
1,299,691	-				-1.0
1,299,691	-				-0.8
1,299,691	-				-0.7
1,299,720	+				+1.2
1,299,721	-				-0.8
1,299,721	-				+0.8
1,299,721	-				-0.3
1,299,745	-				-3.0
1,299,810	-				-2.3
1,299,852	+				-0.2
1,299,852	+				-0.2
1,299,853	-				-1.7
1,299,859	+				+0.3
1,299,860	-				-2.4
1,299,860	-				-1.4
1,299,891	+				+0.1
1,299,891	+				+0.7
1,299,924	+		ABZR87_RS21960	0.11	+0.7
1,299,925	-		ABZR87_RS21960	0.11	-1.8
1,299,925	-		ABZR87_RS21960	0.11	-2.0
1,299,933	+		ABZR87_RS21960	0.11	-0.1
1,299,943	+		ABZR87_RS21960	0.12	-0.5
1,299,943	+		ABZR87_RS21960	0.12	+0.3
1,299,944	-		ABZR87_RS21960	0.12	-2.5
1,299,944	-		ABZR87_RS21960	0.12	-2.1
1,299,944	-		ABZR87_RS21960	0.12	-1.9
1,299,944	-		ABZR87_RS21960	0.12	-2.6
1,299,944	-		ABZR87_RS21960	0.12	-0.8
1,300,072	+		ABZR87_RS21960	0.20	+1.3
1,300,073	-		ABZR87_RS21960	0.20	-2.2
1,300,073	-		ABZR87_RS21960	0.20	-2.7
1,300,073	-		ABZR87_RS21960	0.20	-2.2
1,300,151	-		ABZR87_RS21960	0.25	-3.5
1,300,332	+		ABZR87_RS21960	0.36	-0.4
1,300,333	-		ABZR87_RS21960	0.36	-0.9
1,300,346	+		ABZR87_RS21960	0.36	-0.5
1,300,346	+		ABZR87_RS21960	0.36	+0.8
1,300,346	+		ABZR87_RS21960	0.36	+0.0
1,300,347	-		ABZR87_RS21960	0.36	-0.3
1,300,347	-		ABZR87_RS21960	0.36	-1.0
1,300,387	+		ABZR87_RS21960	0.39	-0.4
1,300,387	+		ABZR87_RS21960	0.39	-0.5
1,300,388	-		ABZR87_RS21960	0.39	-1.3
1,300,388	-		ABZR87_RS21960	0.39	-1.7
1,300,388	-		ABZR87_RS21960	0.39	+1.5
1,300,394	-		ABZR87_RS21960	0.39	-0.5
1,300,394	-		ABZR87_RS21960	0.39	-1.0
1,300,584	+		ABZR87_RS21960	0.51	+0.4
1,300,584	+		ABZR87_RS21960	0.51	+0.1
1,300,585	-		ABZR87_RS21960	0.51	-2.7
1,300,585	-		ABZR87_RS21960	0.51	-2.6
1,300,585	-		ABZR87_RS21960	0.51	-0.6
1,300,703	+		ABZR87_RS21960	0.58	+0.9
1,300,728	+		ABZR87_RS21960	0.59	-0.3
1,300,729	-		ABZR87_RS21960	0.60	-3.9
1,300,741	+		ABZR87_RS21960	0.60	-0.0
1,300,741	+		ABZR87_RS21960	0.60	+0.7
1,300,741	+		ABZR87_RS21960	0.60	+1.7
1,300,741	+		ABZR87_RS21960	0.60	-2.3
1,300,741	+		ABZR87_RS21960	0.60	+0.4
1,300,742	-		ABZR87_RS21960	0.60	-3.0
1,300,829	+		ABZR87_RS21960	0.66	+0.3
1,301,007	+		ABZR87_RS21960	0.76	+1.0
1,301,007	+		ABZR87_RS21960	0.76	-0.5
1,301,007	+		ABZR87_RS21960	0.76	-0.6
1,301,007	+		ABZR87_RS21960	0.76	+0.7
1,301,008	-		ABZR87_RS21960	0.76	+0.7
1,301,008	-		ABZR87_RS21960	0.76	-0.3
1,301,010	+		ABZR87_RS21960	0.77	-0.4
1,301,010	+		ABZR87_RS21960	0.77	+0.1
1,301,046	+		ABZR87_RS21960	0.79	+0.6
1,301,064	+		ABZR87_RS21960	0.80	+0.4
1,301,075	-		ABZR87_RS21960	0.80	-2.2
1,301,205	+		ABZR87_RS21960	0.88	-0.1
1,301,206	-		ABZR87_RS21960	0.88	-0.9
1,301,379	+				-1.8
1,301,428	+				+0.7
1,301,428	+				-1.0
1,301,471	+				+0.2
1,301,471	+				+0.2
1,301,531	+				-2.5
1,301,532	-				-0.4
1,301,579	+		ABZR87_RS21965	0.16	-1.3
1,301,603	+		ABZR87_RS21965	0.20	-0.4
1,301,603	+		ABZR87_RS21965	0.20	-0.9
1,301,604	-		ABZR87_RS21965	0.20	+1.5
1,301,664	-		ABZR87_RS21965	0.29	-0.5
1,301,684	+		ABZR87_RS21965	0.32	+0.1
1,301,684	+		ABZR87_RS21965	0.32	+0.7
1,301,685	-		ABZR87_RS21965	0.32	+1.9
1,301,705	+		ABZR87_RS21965	0.35	-0.8
1,301,706	-		ABZR87_RS21965	0.35	+1.8
1,301,706	-		ABZR87_RS21965	0.35	+0.2
1,301,706	-		ABZR87_RS21965	0.35	-0.5
1,301,706	-		ABZR87_RS21965	0.35	+0.5
1,301,706	-		ABZR87_RS21965	0.35	-1.7
1,301,706	-		ABZR87_RS21965	0.35	-0.6
1,301,745	-		ABZR87_RS21965	0.41	+0.1
1,301,991	-		ABZR87_RS21965	0.78	-1.4
1,301,991	-		ABZR87_RS21965	0.78	+0.9
1,301,991	-		ABZR87_RS21965	0.78	-0.4
1,301,996	+		ABZR87_RS21965	0.79	+0.0
1,301,996	+		ABZR87_RS21965	0.79	-0.4
1,301,996	+		ABZR87_RS21965	0.79	+0.5
1,301,997	-		ABZR87_RS21965	0.79	-0.2
1,301,997	-		ABZR87_RS21965	0.79	-0.4
1,301,997	-		ABZR87_RS21965	0.79	-0.2
1,302,006	-		ABZR87_RS21965	0.80	+1.7
1,302,011	+		ABZR87_RS21965	0.81	+1.0
1,302,012	-		ABZR87_RS21965	0.81	-0.6
1,302,012	-		ABZR87_RS21965	0.81	+0.0
1,302,021	+		ABZR87_RS21965	0.82	+0.3
1,302,021	+		ABZR87_RS21965	0.82	+0.5
1,302,021	+		ABZR87_RS21965	0.82	+0.2
1,302,022	-		ABZR87_RS21965	0.83	-2.2
1,302,022	-		ABZR87_RS21965	0.83	+0.8
1,302,023	+		ABZR87_RS21965	0.83	+0.7
1,302,023	+		ABZR87_RS21965	0.83	+0.9
1,302,023	+		ABZR87_RS21965	0.83	-0.3
1,302,024	-		ABZR87_RS21965	0.83	-0.1
1,302,024	-		ABZR87_RS21965	0.83	+0.2
1,302,100	+				-0.1
1,302,140	-				+0.1
1,302,140	-				+1.2
1,302,224	+				+0.1
1,302,224	+				+0.7
1,302,225	-				-1.0
1,302,225	-				-0.9
1,302,259	+		ABZR87_RS21970	0.11	+0.3
1,302,259	+		ABZR87_RS21970	0.11	+0.2
1,302,260	-		ABZR87_RS21970	0.11	-0.6
1,302,260	-		ABZR87_RS21970	0.11	-0.4
1,302,260	-		ABZR87_RS21970	0.11	-0.1
1,302,283	+		ABZR87_RS21970	0.13	-0.2
1,302,284	-		ABZR87_RS21970	0.13	+1.8
1,302,319	+		ABZR87_RS21970	0.16	+1.2
1,302,319	+		ABZR87_RS21970	0.16	+0.6
1,302,319	+		ABZR87_RS21970	0.16	+0.3
1,302,320	-		ABZR87_RS21970	0.16	+0.3
1,302,345	+		ABZR87_RS21970	0.18	-0.8
1,302,345	+		ABZR87_RS21970	0.18	-0.9
1,302,387	-		ABZR87_RS21970	0.22	+0.3
1,302,387	-		ABZR87_RS21970	0.22	+0.6
1,302,387	-		ABZR87_RS21970	0.22	-1.4
1,302,387	-		ABZR87_RS21970	0.22	+0.2
1,302,387	-		ABZR87_RS21970	0.22	+0.2
1,302,396	+		ABZR87_RS21970	0.23	-0.1