Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21370

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21360 and ABZR87_RS21365 overlap by 4 nucleotidesABZR87_RS21365 and ABZR87_RS21370 are separated by 33 nucleotidesABZR87_RS21370 and ABZR87_RS21375 are separated by 89 nucleotidesABZR87_RS21375 and ABZR87_RS21380 overlap by 4 nucleotidesABZR87_RS21380 and ABZR87_RS21385 are separated by 99 nucleotides ABZR87_RS21360: ABZR87_RS21360 - ligase-associated DNA damage response DEXH box helicase, at 1,173,729 to 1,176,344 _RS21360 ABZR87_RS21365: ABZR87_RS21365 - ligase-associated DNA damage response endonuclease PdeM, at 1,176,341 to 1,177,000 _RS21365 ABZR87_RS21370: ABZR87_RS21370 - zinc-dependent alcohol dehydrogenase, at 1,177,034 to 1,178,203 _RS21370 ABZR87_RS21375: ABZR87_RS21375 - DUF6566 family protein, at 1,178,293 to 1,178,538 _RS21375 ABZR87_RS21380: ABZR87_RS21380 - hypothetical protein, at 1,178,535 to 1,178,705 _RS21380 ABZR87_RS21385: ABZR87_RS21385 - manganese catalase family protein, at 1,178,805 to 1,179,674 _RS21385 Position (kb) 1177 1178 1179Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1176.340 kb on + strandat 1176.340 kb on + strandat 1176.340 kb on + strandat 1176.340 kb on + strandat 1176.341 kb on - strandat 1176.341 kb on - strandat 1176.341 kb on - strandat 1176.341 kb on - strandat 1176.794 kb on + strand, within ABZR87_RS21365at 1176.795 kb on - strand, within ABZR87_RS21365at 1176.991 kb on - strandat 1176.991 kb on - strandat 1176.999 kb on - strandat 1177.089 kb on + strandat 1177.089 kb on + strandat 1177.090 kb on - strandat 1177.090 kb on - strandat 1177.185 kb on + strand, within ABZR87_RS21370at 1177.185 kb on + strand, within ABZR87_RS21370at 1177.186 kb on - strand, within ABZR87_RS21370at 1177.272 kb on + strand, within ABZR87_RS21370at 1177.272 kb on + strand, within ABZR87_RS21370at 1177.273 kb on - strand, within ABZR87_RS21370at 1177.273 kb on - strand, within ABZR87_RS21370at 1177.273 kb on - strand, within ABZR87_RS21370at 1177.294 kb on + strand, within ABZR87_RS21370at 1177.552 kb on + strand, within ABZR87_RS21370at 1177.552 kb on + strand, within ABZR87_RS21370at 1177.552 kb on + strand, within ABZR87_RS21370at 1177.553 kb on - strand, within ABZR87_RS21370at 1177.553 kb on - strand, within ABZR87_RS21370at 1177.553 kb on - strand, within ABZR87_RS21370at 1177.657 kb on + strand, within ABZR87_RS21370at 1177.657 kb on + strand, within ABZR87_RS21370at 1177.658 kb on - strand, within ABZR87_RS21370at 1177.680 kb on + strand, within ABZR87_RS21370at 1177.680 kb on + strand, within ABZR87_RS21370at 1177.680 kb on + strand, within ABZR87_RS21370at 1177.680 kb on + strand, within ABZR87_RS21370at 1177.779 kb on + strand, within ABZR87_RS21370at 1177.822 kb on - strand, within ABZR87_RS21370at 1178.386 kb on + strand, within ABZR87_RS21375at 1178.387 kb on - strand, within ABZR87_RS21375at 1178.581 kb on + strand, within ABZR87_RS21380at 1178.581 kb on + strand, within ABZR87_RS21380at 1178.581 kb on + strand, within ABZR87_RS21380at 1178.647 kb on + strand, within ABZR87_RS21380at 1178.648 kb on - strand, within ABZR87_RS21380at 1178.648 kb on - strand, within ABZR87_RS21380at 1178.699 kb on + strandat 1178.699 kb on + strandat 1178.700 kb on - strandat 1178.700 kb on - strandat 1178.700 kb on - strandat 1178.700 kb on - strandat 1178.700 kb on - strandat 1178.700 kb on - strandat 1178.700 kb on - strandat 1179.034 kb on + strand, within ABZR87_RS21385at 1179.035 kb on - strand, within ABZR87_RS21385at 1179.035 kb on - strand, within ABZR87_RS21385at 1179.098 kb on - strand, within ABZR87_RS21385at 1179.098 kb on - strand, within ABZR87_RS21385at 1179.098 kb on - strand, within ABZR87_RS21385at 1179.193 kb on - strand, within ABZR87_RS21385at 1179.202 kb on + strand, within ABZR87_RS21385at 1179.202 kb on + strand, within ABZR87_RS21385at 1179.203 kb on - strand, within ABZR87_RS21385at 1179.203 kb on - strand, within ABZR87_RS21385at 1179.203 kb on - strand, within ABZR87_RS21385

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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1,176,340 + +0.1
1,176,340 + +1.3
1,176,340 + -0.5
1,176,340 + +0.8
1,176,341 - -0.4
1,176,341 - +1.2
1,176,341 - -0.9
1,176,341 - +0.1
1,176,794 + ABZR87_RS21365 0.69 +0.8
1,176,795 - ABZR87_RS21365 0.69 -0.2
1,176,991 - +0.2
1,176,991 - -2.2
1,176,999 - -1.1
1,177,089 + -1.3
1,177,089 + -0.2
1,177,090 - -0.0
1,177,090 - +0.8
1,177,185 + ABZR87_RS21370 0.13 +0.4
1,177,185 + ABZR87_RS21370 0.13 +0.4
1,177,186 - ABZR87_RS21370 0.13 +1.0
1,177,272 + ABZR87_RS21370 0.20 +2.0
1,177,272 + ABZR87_RS21370 0.20 -2.9
1,177,273 - ABZR87_RS21370 0.20 -0.8
1,177,273 - ABZR87_RS21370 0.20 -0.5
1,177,273 - ABZR87_RS21370 0.20 +0.4
1,177,294 + ABZR87_RS21370 0.22 -0.3
1,177,552 + ABZR87_RS21370 0.44 +1.8
1,177,552 + ABZR87_RS21370 0.44 +0.4
1,177,552 + ABZR87_RS21370 0.44 +0.3
1,177,553 - ABZR87_RS21370 0.44 +1.3
1,177,553 - ABZR87_RS21370 0.44 -0.3
1,177,553 - ABZR87_RS21370 0.44 +0.4
1,177,657 + ABZR87_RS21370 0.53 +0.2
1,177,657 + ABZR87_RS21370 0.53 -0.7
1,177,658 - ABZR87_RS21370 0.53 -0.1
1,177,680 + ABZR87_RS21370 0.55 +0.1
1,177,680 + ABZR87_RS21370 0.55 +0.2
1,177,680 + ABZR87_RS21370 0.55 -0.3
1,177,680 + ABZR87_RS21370 0.55 +1.1
1,177,779 + ABZR87_RS21370 0.64 -1.2
1,177,822 - ABZR87_RS21370 0.67 -1.6
1,178,386 + ABZR87_RS21375 0.38 +0.5
1,178,387 - ABZR87_RS21375 0.38 -0.7
1,178,581 + ABZR87_RS21380 0.27 -0.9
1,178,581 + ABZR87_RS21380 0.27 +0.2
1,178,581 + ABZR87_RS21380 0.27 +0.5
1,178,647 + ABZR87_RS21380 0.65 +0.5
1,178,648 - ABZR87_RS21380 0.66 +1.7
1,178,648 - ABZR87_RS21380 0.66 -1.7
1,178,699 + -0.7
1,178,699 + -1.3
1,178,700 - -0.5
1,178,700 - -0.1
1,178,700 - -0.5
1,178,700 - +0.0
1,178,700 - -0.0
1,178,700 - +0.4
1,178,700 - +3.2
1,179,034 + ABZR87_RS21385 0.26 +0.5
1,179,035 - ABZR87_RS21385 0.26 +0.2
1,179,035 - ABZR87_RS21385 0.26 +1.3
1,179,098 - ABZR87_RS21385 0.34 -2.3
1,179,098 - ABZR87_RS21385 0.34 -0.3
1,179,098 - ABZR87_RS21385 0.34 +0.6
1,179,193 - ABZR87_RS21385 0.45 -1.2
1,179,202 + ABZR87_RS21385 0.46 -0.8
1,179,202 + ABZR87_RS21385 0.46 -0.8
1,179,203 - ABZR87_RS21385 0.46 -0.9
1,179,203 - ABZR87_RS21385 0.46 +1.0
1,179,203 - ABZR87_RS21385 0.46 +1.3

Or see this region's nucleotide sequence