Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20550 and ABZR87_RS20555 are separated by 146 nucleotides ABZR87_RS20555 and ABZR87_RS20560 are separated by 527 nucleotides
ABZR87_RS20550: ABZR87_RS20550 - SLC13 family permease, at 996,872 to 998,029
_RS20550
ABZR87_RS20555: ABZR87_RS20555 - helix-turn-helix transcriptional regulator, at 998,176 to 998,709
_RS20555
ABZR87_RS20560: ABZR87_RS20560 - error-prone DNA polymerase, at 999,237 to 1,002,476
_RS20560
Position (kb) 998
999 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 997.269 kb on + strand, within ABZR87_RS20550 at 997.269 kb on + strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.287 kb on + strand, within ABZR87_RS20550 at 997.287 kb on + strand, within ABZR87_RS20550 at 997.288 kb on - strand, within ABZR87_RS20550 at 997.288 kb on - strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.610 kb on + strand, within ABZR87_RS20550 at 997.611 kb on - strand, within ABZR87_RS20550 at 997.876 kb on + strand, within ABZR87_RS20550 at 997.879 kb on - strand, within ABZR87_RS20550 at 997.879 kb on - strand, within ABZR87_RS20550 at 997.901 kb on + strand, within ABZR87_RS20550 at 998.029 kb on + strand at 998.029 kb on + strand at 998.029 kb on + strand at 998.030 kb on - strand at 998.030 kb on - strand at 998.030 kb on - strand at 998.030 kb on - strand at 998.099 kb on + strand at 998.099 kb on + strand at 998.100 kb on - strand at 998.100 kb on - strand at 998.319 kb on + strand, within ABZR87_RS20555 at 998.340 kb on - strand, within ABZR87_RS20555 at 998.373 kb on - strand, within ABZR87_RS20555 at 998.373 kb on - strand, within ABZR87_RS20555 at 998.373 kb on - strand, within ABZR87_RS20555 at 998.612 kb on + strand, within ABZR87_RS20555 at 998.612 kb on + strand, within ABZR87_RS20555 at 998.613 kb on - strand, within ABZR87_RS20555 at 998.613 kb on - strand, within ABZR87_RS20555 at 998.628 kb on + strand, within ABZR87_RS20555 at 998.628 kb on + strand, within ABZR87_RS20555 at 998.686 kb on + strand at 998.686 kb on + strand at 998.686 kb on + strand at 998.686 kb on + strand at 998.686 kb on + strand at 998.687 kb on - strand at 998.687 kb on - strand at 998.814 kb on + strand at 998.814 kb on + strand at 998.814 kb on + strand at 998.814 kb on + strand at 998.815 kb on - strand at 998.815 kb on - strand at 998.815 kb on - strand at 998.815 kb on - strand at 998.845 kb on + strand at 998.845 kb on + strand at 998.845 kb on + strand at 998.845 kb on + strand at 998.845 kb on + strand at 998.845 kb on + strand at 998.846 kb on - strand at 998.846 kb on - strand at 998.846 kb on - strand at 998.846 kb on - strand at 998.846 kb on - strand at 998.897 kb on + strand at 998.898 kb on - strand at 998.898 kb on - strand at 998.904 kb on + strand at 998.904 kb on + strand at 998.904 kb on + strand at 998.904 kb on + strand at 998.904 kb on + strand at 998.904 kb on + strand at 998.905 kb on - strand at 998.929 kb on + strand at 998.930 kb on - strand at 998.969 kb on - strand at 998.969 kb on - strand at 998.969 kb on - strand at 998.969 kb on - strand at 999.004 kb on + strand at 999.004 kb on + strand at 999.004 kb on + strand at 999.004 kb on + strand at 999.004 kb on + strand at 999.004 kb on + strand at 999.004 kb on + strand at 999.004 kb on + strand at 999.005 kb on - strand at 999.005 kb on - strand at 999.005 kb on - strand at 999.005 kb on - strand at 999.005 kb on - strand at 999.099 kb on + strand at 999.254 kb on + strand at 999.255 kb on - strand at 999.347 kb on - strand at 999.347 kb on - strand at 999.563 kb on + strand, within ABZR87_RS20560 at 999.564 kb on - strand, within ABZR87_RS20560 at 999.564 kb on - strand, within ABZR87_RS20560 at 999.628 kb on + strand, within ABZR87_RS20560
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 997,269 + ABZR87_RS20550 0.34 -0.4 997,269 + ABZR87_RS20550 0.34 +0.6 997,270 - ABZR87_RS20550 0.34 -2.0 997,270 - ABZR87_RS20550 0.34 -0.4 997,270 - ABZR87_RS20550 0.34 +0.0 997,270 - ABZR87_RS20550 0.34 +0.4 997,287 + ABZR87_RS20550 0.36 -1.5 997,287 + ABZR87_RS20550 0.36 +0.7 997,288 - ABZR87_RS20550 0.36 +0.9 997,288 - ABZR87_RS20550 0.36 +1.1 997,356 + ABZR87_RS20550 0.42 -0.1 997,356 + ABZR87_RS20550 0.42 +0.3 997,356 + ABZR87_RS20550 0.42 +0.3 997,356 + ABZR87_RS20550 0.42 +0.6 997,356 + ABZR87_RS20550 0.42 -0.1 997,356 + ABZR87_RS20550 0.42 -0.3 997,357 - ABZR87_RS20550 0.42 -1.5 997,357 - ABZR87_RS20550 0.42 -0.1 997,357 - ABZR87_RS20550 0.42 -0.6 997,357 - ABZR87_RS20550 0.42 -1.2 997,357 - ABZR87_RS20550 0.42 +1.0 997,357 - ABZR87_RS20550 0.42 +0.3 997,357 - ABZR87_RS20550 0.42 +0.8 997,357 - ABZR87_RS20550 0.42 -1.3 997,357 - ABZR87_RS20550 0.42 +0.3 997,610 + ABZR87_RS20550 0.64 -0.7 997,611 - ABZR87_RS20550 0.64 -0.2 997,876 + ABZR87_RS20550 0.87 -0.4 997,879 - ABZR87_RS20550 0.87 +0.6 997,879 - ABZR87_RS20550 0.87 -0.3 997,901 + ABZR87_RS20550 0.89 -0.5 998,029 + -0.3 998,029 + -0.3 998,029 + +0.0 998,030 - +0.5 998,030 - +0.8 998,030 - -0.5 998,030 - -0.2 998,099 + +0.0 998,099 + +0.6 998,100 - -0.8 998,100 - -0.8 998,319 + ABZR87_RS20555 0.27 -3.0 998,340 - ABZR87_RS20555 0.31 +0.1 998,373 - ABZR87_RS20555 0.37 -1.6 998,373 - ABZR87_RS20555 0.37 -0.5 998,373 - ABZR87_RS20555 0.37 -1.2 998,612 + ABZR87_RS20555 0.82 -2.7 998,612 + ABZR87_RS20555 0.82 -1.3 998,613 - ABZR87_RS20555 0.82 -3.4 998,613 - ABZR87_RS20555 0.82 -2.1 998,628 + ABZR87_RS20555 0.85 -3.0 998,628 + ABZR87_RS20555 0.85 -0.7 998,686 + -3.0 998,686 + -0.4 998,686 + +0.5 998,686 + -1.6 998,686 + -3.9 998,687 - -2.5 998,687 - -2.4 998,814 + -2.8 998,814 + -2.4 998,814 + -0.7 998,814 + -2.5 998,815 - +0.9 998,815 - -0.3 998,815 - -2.4 998,815 - -0.6 998,845 + -2.2 998,845 + -0.0 998,845 + -0.8 998,845 + +0.2 998,845 + -2.2 998,845 + -1.6 998,846 - -0.3 998,846 - +0.1 998,846 - -0.4 998,846 - -0.4 998,846 - -1.9 998,897 + -2.1 998,898 - +0.2 998,898 - -0.3 998,904 + -1.6 998,904 + -0.3 998,904 + -3.4 998,904 + -2.3 998,904 + -1.1 998,904 + -0.1 998,905 - -1.1 998,929 + -0.7 998,930 - -0.6 998,969 - +0.0 998,969 - -0.9 998,969 - +0.6 998,969 - -1.8 999,004 + -0.6 999,004 + +0.1 999,004 + -1.2 999,004 + +1.5 999,004 + -2.5 999,004 + +1.0 999,004 + +1.0 999,004 + -1.6 999,005 - -0.3 999,005 - +2.1 999,005 - -1.1 999,005 - -0.1 999,005 - -0.3 999,099 + +0.0 999,254 + -0.1 999,255 - +1.3 999,347 - +0.7 999,347 - -0.6 999,563 + ABZR87_RS20560 0.10 +0.8 999,564 - ABZR87_RS20560 0.10 -0.9 999,564 - ABZR87_RS20560 0.10 -0.2 999,628 + ABZR87_RS20560 0.12 +0.4
Or see this region's nucleotide sequence