Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20100 and ABZR87_RS20105 are separated by 194 nucleotides ABZR87_RS20105 and ABZR87_RS20110 are separated by 40 nucleotides ABZR87_RS20110 and ABZR87_RS20115 are separated by 180 nucleotides
ABZR87_RS20100: ABZR87_RS20100 - excinuclease ABC subunit UvrA, at 883,424 to 889,273
_RS20100
ABZR87_RS20105: ABZR87_RS20105 - flagellar filament capping protein FliD, at 889,468 to 891,504
_RS20105
ABZR87_RS20110: ABZR87_RS20110 - hypothetical protein, at 891,545 to 891,820
_RS20110
ABZR87_RS20115: ABZR87_RS20115 - hypothetical protein, at 892,001 to 892,738
_RS20115
Position (kb) 889
890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 888.488 kb on + strand, within ABZR87_RS20100 at 888.488 kb on + strand, within ABZR87_RS20100 at 888.488 kb on + strand, within ABZR87_RS20100 at 888.488 kb on + strand, within ABZR87_RS20100 at 888.488 kb on + strand, within ABZR87_RS20100 at 888.489 kb on - strand, within ABZR87_RS20100 at 888.555 kb on - strand, within ABZR87_RS20100 at 888.965 kb on + strand at 888.965 kb on + strand at 888.965 kb on + strand at 888.965 kb on + strand at 888.965 kb on + strand at 888.965 kb on + strand at 888.966 kb on - strand at 888.966 kb on - strand at 888.966 kb on - strand at 888.966 kb on - strand at 888.966 kb on - strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.495 kb on + strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.496 kb on - strand at 889.554 kb on + strand at 889.554 kb on + strand at 889.555 kb on - strand at 889.555 kb on - strand at 889.555 kb on - strand at 889.555 kb on - strand at 889.555 kb on - strand at 889.783 kb on + strand, within ABZR87_RS20105 at 889.783 kb on + strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.784 kb on - strand, within ABZR87_RS20105 at 889.820 kb on + strand, within ABZR87_RS20105 at 889.933 kb on + strand, within ABZR87_RS20105 at 889.933 kb on + strand, within ABZR87_RS20105 at 889.933 kb on + strand, within ABZR87_RS20105 at 889.934 kb on - strand, within ABZR87_RS20105 at 889.934 kb on - strand, within ABZR87_RS20105 at 889.934 kb on - strand, within ABZR87_RS20105 at 890.277 kb on + strand, within ABZR87_RS20105 at 890.277 kb on + strand, within ABZR87_RS20105 at 890.277 kb on + strand, within ABZR87_RS20105 at 890.278 kb on - strand, within ABZR87_RS20105 at 890.294 kb on + strand, within ABZR87_RS20105 at 890.294 kb on + strand, within ABZR87_RS20105 at 890.294 kb on + strand, within ABZR87_RS20105 at 890.294 kb on + strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.295 kb on - strand, within ABZR87_RS20105 at 890.398 kb on + strand, within ABZR87_RS20105 at 890.398 kb on + strand, within ABZR87_RS20105 at 890.399 kb on - strand, within ABZR87_RS20105 at 890.399 kb on - strand, within ABZR87_RS20105 at 890.399 kb on - strand, within ABZR87_RS20105 at 890.399 kb on - strand, within ABZR87_RS20105 at 890.737 kb on + strand, within ABZR87_RS20105 at 890.737 kb on + strand, within ABZR87_RS20105 at 890.737 kb on + strand, within ABZR87_RS20105 at 890.737 kb on + strand, within ABZR87_RS20105 at 890.738 kb on - strand, within ABZR87_RS20105 at 890.799 kb on + strand, within ABZR87_RS20105 at 890.799 kb on + strand, within ABZR87_RS20105 at 890.885 kb on - strand, within ABZR87_RS20105 at 890.885 kb on - strand, within ABZR87_RS20105 at 891.014 kb on - strand, within ABZR87_RS20105 at 891.014 kb on - strand, within ABZR87_RS20105 at 891.014 kb on - strand, within ABZR87_RS20105 at 891.101 kb on + strand, within ABZR87_RS20105 at 891.101 kb on + strand, within ABZR87_RS20105 at 891.101 kb on + strand, within ABZR87_RS20105 at 891.101 kb on + strand, within ABZR87_RS20105 at 891.101 kb on + strand, within ABZR87_RS20105 at 891.245 kb on - strand, within ABZR87_RS20105 at 891.394 kb on + strand at 891.394 kb on + strand at 891.394 kb on + strand at 891.394 kb on + strand at 891.397 kb on + strand at 891.397 kb on + strand at 891.397 kb on + strand at 891.398 kb on - strand at 891.398 kb on - strand at 891.444 kb on + strand at 891.445 kb on - strand at 891.445 kb on - strand at 891.454 kb on + strand at 891.454 kb on + strand at 891.454 kb on + strand at 891.454 kb on + strand at 891.455 kb on - strand at 891.476 kb on + strand at 891.476 kb on + strand at 891.476 kb on + strand at 891.503 kb on - strand at 891.547 kb on - strand at 891.795 kb on - strand at 891.807 kb on + strand at 891.910 kb on - strand at 891.939 kb on + strand at 891.996 kb on - strand at 892.002 kb on + strand at 892.002 kb on + strand at 892.002 kb on + strand at 892.003 kb on - strand at 892.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 888,488 + ABZR87_RS20100 0.87 -0.6 888,488 + ABZR87_RS20100 0.87 -0.6 888,488 + ABZR87_RS20100 0.87 +0.5 888,488 + ABZR87_RS20100 0.87 -1.2 888,488 + ABZR87_RS20100 0.87 +1.1 888,489 - ABZR87_RS20100 0.87 -1.7 888,555 - ABZR87_RS20100 0.88 -0.3 888,965 + -2.4 888,965 + -0.4 888,965 + -1.3 888,965 + +1.0 888,965 + -0.8 888,965 + +0.0 888,966 - -0.7 888,966 - +0.5 888,966 - +0.8 888,966 - -0.2 888,966 - +0.5 889,495 + +0.9 889,495 + -0.5 889,495 + -0.6 889,495 + -2.8 889,495 + +0.4 889,495 + +0.1 889,495 + +0.3 889,495 + +0.1 889,495 + +1.5 889,495 + +0.6 889,495 + +1.9 889,496 - +1.5 889,496 - +1.2 889,496 - +2.1 889,496 - +0.8 889,496 - -0.5 889,496 - -0.2 889,496 - +0.1 889,496 - -0.3 889,496 - -1.1 889,554 + -0.8 889,554 + +0.5 889,555 - -0.7 889,555 - -0.9 889,555 - +0.0 889,555 - +0.0 889,555 - +0.2 889,783 + ABZR87_RS20105 0.15 -0.1 889,783 + ABZR87_RS20105 0.15 +0.3 889,784 - ABZR87_RS20105 0.16 -0.3 889,784 - ABZR87_RS20105 0.16 -0.6 889,784 - ABZR87_RS20105 0.16 -0.7 889,784 - ABZR87_RS20105 0.16 +0.2 889,784 - ABZR87_RS20105 0.16 +0.2 889,784 - ABZR87_RS20105 0.16 +0.1 889,784 - ABZR87_RS20105 0.16 +0.9 889,784 - ABZR87_RS20105 0.16 +1.2 889,820 + ABZR87_RS20105 0.17 +0.7 889,933 + ABZR87_RS20105 0.23 -0.8 889,933 + ABZR87_RS20105 0.23 +1.9 889,933 + ABZR87_RS20105 0.23 -1.6 889,934 - ABZR87_RS20105 0.23 +0.5 889,934 - ABZR87_RS20105 0.23 -0.2 889,934 - ABZR87_RS20105 0.23 +0.1 890,277 + ABZR87_RS20105 0.40 -1.2 890,277 + ABZR87_RS20105 0.40 -0.3 890,277 + ABZR87_RS20105 0.40 -0.4 890,278 - ABZR87_RS20105 0.40 +1.2 890,294 + ABZR87_RS20105 0.41 +0.6 890,294 + ABZR87_RS20105 0.41 -0.1 890,294 + ABZR87_RS20105 0.41 +0.4 890,294 + ABZR87_RS20105 0.41 +0.5 890,295 - ABZR87_RS20105 0.41 +0.3 890,295 - ABZR87_RS20105 0.41 -0.4 890,295 - ABZR87_RS20105 0.41 +1.6 890,295 - ABZR87_RS20105 0.41 +1.5 890,295 - ABZR87_RS20105 0.41 +0.1 890,295 - ABZR87_RS20105 0.41 +0.3 890,295 - ABZR87_RS20105 0.41 +0.4 890,295 - ABZR87_RS20105 0.41 +0.2 890,398 + ABZR87_RS20105 0.46 -0.0 890,398 + ABZR87_RS20105 0.46 +0.1 890,399 - ABZR87_RS20105 0.46 -0.7 890,399 - ABZR87_RS20105 0.46 -0.6 890,399 - ABZR87_RS20105 0.46 -0.1 890,399 - ABZR87_RS20105 0.46 +0.4 890,737 + ABZR87_RS20105 0.62 +0.1 890,737 + ABZR87_RS20105 0.62 -1.1 890,737 + ABZR87_RS20105 0.62 -1.3 890,737 + ABZR87_RS20105 0.62 -1.0 890,738 - ABZR87_RS20105 0.62 -0.4 890,799 + ABZR87_RS20105 0.65 -0.9 890,799 + ABZR87_RS20105 0.65 -0.8 890,885 - ABZR87_RS20105 0.70 -1.3 890,885 - ABZR87_RS20105 0.70 +0.2 891,014 - ABZR87_RS20105 0.76 +0.5 891,014 - ABZR87_RS20105 0.76 -0.5 891,014 - ABZR87_RS20105 0.76 -0.5 891,101 + ABZR87_RS20105 0.80 +1.5 891,101 + ABZR87_RS20105 0.80 -0.3 891,101 + ABZR87_RS20105 0.80 -0.9 891,101 + ABZR87_RS20105 0.80 +0.6 891,101 + ABZR87_RS20105 0.80 -1.0 891,245 - ABZR87_RS20105 0.87 -0.1 891,394 + -0.5 891,394 + -0.7 891,394 + +0.3 891,394 + -0.1 891,397 + -1.0 891,397 + -0.4 891,397 + +0.7 891,398 - +0.8 891,398 - +0.4 891,444 + +0.5 891,445 - +0.9 891,445 - -0.6 891,454 + +0.5 891,454 + -0.4 891,454 + -0.3 891,454 + -0.0 891,455 - -2.2 891,476 + +0.1 891,476 + +0.4 891,476 + +0.0 891,503 - -0.3 891,547 - -1.3 891,795 - +0.2 891,807 + -0.4 891,910 - -0.0 891,939 + -1.3 891,996 - -1.4 892,002 + -0.2 892,002 + -1.1 892,002 + +0.2 892,003 - +0.6 892,006 + -1.6
Or see this region's nucleotide sequence