Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19230 and ABZR87_RS19235 are separated by 2 nucleotides ABZR87_RS19235 and ABZR87_RS19240 overlap by 4 nucleotides ABZR87_RS19240 and ABZR87_RS19245 are separated by 449 nucleotides
ABZR87_RS19230: ABZR87_RS19230 - NAD(P)H-dependent oxidoreductase, at 677,438 to 677,935
_RS19230
ABZR87_RS19235: ABZR87_RS19235 - ATP-binding cassette domain-containing protein, at 677,938 to 678,681
_RS19235
ABZR87_RS19240: ABZR87_RS19240 - molybdate ABC transporter permease subunit, at 678,678 to 679,364
_RS19240
ABZR87_RS19245: ABZR87_RS19245 - LuxR family transcriptional regulator, at 679,814 to 680,917
_RS19245
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 677.706 kb on - strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.874 kb on + strand, within ABZR87_RS19230 at 677.875 kb on - strand, within ABZR87_RS19230 at 678.040 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.061 kb on + strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.062 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.082 kb on - strand, within ABZR87_RS19235 at 678.407 kb on + strand, within ABZR87_RS19235 at 678.408 kb on - strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.422 kb on + strand, within ABZR87_RS19235 at 678.573 kb on - strand, within ABZR87_RS19235 at 678.681 kb on + strand at 678.681 kb on + strand at 678.681 kb on + strand at 678.681 kb on + strand at 678.682 kb on - strand at 678.682 kb on - strand at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.817 kb on + strand, within ABZR87_RS19240 at 678.818 kb on - strand, within ABZR87_RS19240 at 679.086 kb on + strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.087 kb on - strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.103 kb on + strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.104 kb on - strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.177 kb on + strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.178 kb on - strand, within ABZR87_RS19240 at 679.180 kb on + strand, within ABZR87_RS19240 at 679.181 kb on - strand, within ABZR87_RS19240 at 679.271 kb on - strand, within ABZR87_RS19240 at 679.468 kb on + strand at 679.468 kb on + strand at 679.468 kb on + strand at 679.469 kb on - strand at 679.469 kb on - strand at 679.480 kb on + strand at 679.480 kb on + strand at 679.481 kb on - strand at 679.481 kb on - strand at 679.585 kb on + strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.586 kb on - strand at 679.851 kb on + strand at 679.851 kb on + strand at 679.852 kb on - strand at 679.906 kb on + strand at 679.907 kb on - strand at 680.028 kb on + strand, within ABZR87_RS19245 at 680.282 kb on + strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.283 kb on - strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.339 kb on + strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245 at 680.340 kb on - strand, within ABZR87_RS19245
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 677,706 - ABZR87_RS19230 0.54 +1.1 677,874 + ABZR87_RS19230 0.88 +1.2 677,874 + ABZR87_RS19230 0.88 -1.0 677,875 - ABZR87_RS19230 0.88 -0.9 678,040 + ABZR87_RS19235 0.14 +1.8 678,061 + ABZR87_RS19235 0.17 +1.0 678,061 + ABZR87_RS19235 0.17 +0.1 678,061 + ABZR87_RS19235 0.17 +1.2 678,062 - ABZR87_RS19235 0.17 -0.4 678,062 - ABZR87_RS19235 0.17 -1.5 678,062 - ABZR87_RS19235 0.17 +0.1 678,062 - ABZR87_RS19235 0.17 +0.4 678,082 - ABZR87_RS19235 0.19 -0.5 678,082 - ABZR87_RS19235 0.19 +0.0 678,407 + ABZR87_RS19235 0.63 +0.2 678,408 - ABZR87_RS19235 0.63 +0.1 678,422 + ABZR87_RS19235 0.65 -0.0 678,422 + ABZR87_RS19235 0.65 +0.4 678,573 - ABZR87_RS19235 0.85 -0.8 678,681 + -0.1 678,681 + -2.0 678,681 + -0.3 678,681 + -0.0 678,682 - -0.3 678,682 - -1.8 678,817 + ABZR87_RS19240 0.20 -1.1 678,817 + ABZR87_RS19240 0.20 -0.7 678,817 + ABZR87_RS19240 0.20 +0.1 678,818 - ABZR87_RS19240 0.20 +0.2 679,086 + ABZR87_RS19240 0.59 +0.5 679,087 - ABZR87_RS19240 0.60 +0.3 679,087 - ABZR87_RS19240 0.60 -0.2 679,103 + ABZR87_RS19240 0.62 +0.6 679,103 + ABZR87_RS19240 0.62 +0.7 679,104 - ABZR87_RS19240 0.62 +0.3 679,104 - ABZR87_RS19240 0.62 +0.1 679,177 + ABZR87_RS19240 0.73 -0.3 679,177 + ABZR87_RS19240 0.73 -1.3 679,177 + ABZR87_RS19240 0.73 +0.7 679,177 + ABZR87_RS19240 0.73 -0.5 679,178 - ABZR87_RS19240 0.73 +0.5 679,178 - ABZR87_RS19240 0.73 -0.6 679,178 - ABZR87_RS19240 0.73 -0.6 679,180 + ABZR87_RS19240 0.73 +0.1 679,181 - ABZR87_RS19240 0.73 +0.1 679,271 - ABZR87_RS19240 0.86 +1.2 679,468 + -0.1 679,468 + -0.4 679,468 + +0.6 679,469 - -1.0 679,469 - +0.2 679,480 + -0.3 679,480 + +0.3 679,481 - +0.5 679,481 - +0.1 679,585 + +0.1 679,586 - -0.1 679,586 - -1.4 679,586 - +0.0 679,851 + -0.6 679,851 + +0.0 679,852 - -0.5 679,906 + -0.4 679,907 - -0.5 680,028 + ABZR87_RS19245 0.19 +0.4 680,282 + ABZR87_RS19245 0.42 -0.4 680,283 - ABZR87_RS19245 0.42 +0.4 680,283 - ABZR87_RS19245 0.42 +2.6 680,339 + ABZR87_RS19245 0.48 +1.0 680,339 + ABZR87_RS19245 0.48 -1.0 680,339 + ABZR87_RS19245 0.48 -0.3 680,340 - ABZR87_RS19245 0.48 +0.4 680,340 - ABZR87_RS19245 0.48 +1.2 680,340 - ABZR87_RS19245 0.48 -0.1
Or see this region's nucleotide sequence