Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19040 and ABZR87_RS19045 are separated by 122 nucleotides ABZR87_RS19045 and ABZR87_RS19050 are separated by 85 nucleotides ABZR87_RS19050 and ABZR87_RS19055 are separated by 109 nucleotides
ABZR87_RS19040: ABZR87_RS19040 - ATP-binding protein, at 633,686 to 634,981
_RS19040
ABZR87_RS19045: ABZR87_RS19045 - DUF333 domain-containing protein, at 635,104 to 635,550
_RS19045
ABZR87_RS19050: ABZR87_RS19050 - glycosyltransferase family 39 protein, at 635,636 to 637,330
_RS19050
ABZR87_RS19055: ABZR87_RS19055 - LysR family transcriptional regulator, at 637,440 to 638,411
_RS19055
Position (kb)
635
636
637
638 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 634.686 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040 at 634.686 kb on - strand, within ABZR87_RS19040 at 635.020 kb on + strand at 635.020 kb on + strand at 635.020 kb on + strand at 635.020 kb on + strand at 635.021 kb on - strand at 635.021 kb on - strand at 635.038 kb on + strand at 635.038 kb on + strand at 635.038 kb on + strand at 635.038 kb on + strand at 635.039 kb on - strand at 635.043 kb on + strand at 635.043 kb on + strand at 635.043 kb on + strand at 635.043 kb on + strand at 635.044 kb on - strand at 635.044 kb on - strand at 635.044 kb on - strand at 635.048 kb on + strand at 635.347 kb on + strand, within ABZR87_RS19045 at 635.419 kb on + strand, within ABZR87_RS19045 at 635.419 kb on + strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.420 kb on - strand, within ABZR87_RS19045 at 635.548 kb on + strand at 635.739 kb on + strand at 635.740 kb on - strand at 635.869 kb on - strand, within ABZR87_RS19050 at 635.871 kb on + strand, within ABZR87_RS19050 at 635.872 kb on - strand, within ABZR87_RS19050 at 635.872 kb on - strand, within ABZR87_RS19050 at 635.904 kb on + strand, within ABZR87_RS19050 at 635.905 kb on - strand, within ABZR87_RS19050 at 635.905 kb on - strand, within ABZR87_RS19050 at 636.516 kb on + strand, within ABZR87_RS19050 at 636.517 kb on - strand, within ABZR87_RS19050 at 636.517 kb on - strand, within ABZR87_RS19050 at 636.714 kb on + strand, within ABZR87_RS19050 at 636.714 kb on + strand, within ABZR87_RS19050 at 636.714 kb on + strand, within ABZR87_RS19050 at 636.714 kb on + strand, within ABZR87_RS19050 at 636.715 kb on - strand, within ABZR87_RS19050 at 636.924 kb on + strand, within ABZR87_RS19050 at 636.924 kb on + strand, within ABZR87_RS19050 at 636.924 kb on + strand, within ABZR87_RS19050 at 636.924 kb on + strand, within ABZR87_RS19050 at 636.924 kb on + strand, within ABZR87_RS19050 at 636.925 kb on - strand, within ABZR87_RS19050 at 636.925 kb on - strand, within ABZR87_RS19050 at 636.925 kb on - strand, within ABZR87_RS19050 at 636.981 kb on + strand, within ABZR87_RS19050 at 637.122 kb on + strand, within ABZR87_RS19050 at 637.192 kb on - strand at 637.367 kb on - strand at 637.374 kb on + strand at 637.400 kb on + strand at 637.417 kb on + strand at 637.417 kb on + strand at 637.417 kb on + strand at 637.418 kb on - strand at 637.418 kb on - strand at 637.464 kb on + strand at 637.464 kb on + strand at 637.465 kb on - strand at 637.465 kb on - strand at 637.465 kb on - strand at 637.692 kb on + strand, within ABZR87_RS19055 at 637.692 kb on + strand, within ABZR87_RS19055 at 637.693 kb on - strand, within ABZR87_RS19055 at 637.693 kb on - strand, within ABZR87_RS19055 at 637.693 kb on - strand, within ABZR87_RS19055 at 637.794 kb on + strand, within ABZR87_RS19055 at 637.794 kb on + strand, within ABZR87_RS19055 at 637.912 kb on + strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.913 kb on - strand, within ABZR87_RS19055 at 637.971 kb on + strand, within ABZR87_RS19055 at 637.971 kb on + strand, within ABZR87_RS19055 at 637.971 kb on + strand, within ABZR87_RS19055 at 637.972 kb on - strand, within ABZR87_RS19055 at 637.972 kb on - strand, within ABZR87_RS19055 at 637.992 kb on + strand, within ABZR87_RS19055 at 637.992 kb on + strand, within ABZR87_RS19055 at 638.296 kb on + strand, within ABZR87_RS19055 at 638.297 kb on - strand, within ABZR87_RS19055 at 638.297 kb on - strand, within ABZR87_RS19055
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 634,686 - ABZR87_RS19040 0.77 -1.0 634,686 - ABZR87_RS19040 0.77 +0.7 634,686 - ABZR87_RS19040 0.77 +0.3 635,020 + -0.4 635,020 + -0.6 635,020 + -1.1 635,020 + -0.7 635,021 - +0.5 635,021 - +0.8 635,038 + +0.7 635,038 + -0.4 635,038 + -0.4 635,038 + +0.7 635,039 - +0.8 635,043 + -0.5 635,043 + +1.9 635,043 + -1.1 635,043 + +3.6 635,044 - -0.0 635,044 - -0.4 635,044 - -0.8 635,048 + -1.0 635,347 + ABZR87_RS19045 0.54 +1.2 635,419 + ABZR87_RS19045 0.70 -1.1 635,419 + ABZR87_RS19045 0.70 +0.1 635,420 - ABZR87_RS19045 0.71 -1.3 635,420 - ABZR87_RS19045 0.71 +0.4 635,420 - ABZR87_RS19045 0.71 +0.6 635,420 - ABZR87_RS19045 0.71 -0.3 635,420 - ABZR87_RS19045 0.71 -0.7 635,548 + +0.4 635,739 + +0.4 635,740 - -1.8 635,869 - ABZR87_RS19050 0.14 -2.2 635,871 + ABZR87_RS19050 0.14 -1.0 635,872 - ABZR87_RS19050 0.14 -1.6 635,872 - ABZR87_RS19050 0.14 -0.8 635,904 + ABZR87_RS19050 0.16 +1.0 635,905 - ABZR87_RS19050 0.16 -0.3 635,905 - ABZR87_RS19050 0.16 -0.0 636,516 + ABZR87_RS19050 0.52 +0.7 636,517 - ABZR87_RS19050 0.52 +1.0 636,517 - ABZR87_RS19050 0.52 -1.3 636,714 + ABZR87_RS19050 0.64 -0.2 636,714 + ABZR87_RS19050 0.64 -1.2 636,714 + ABZR87_RS19050 0.64 -0.9 636,714 + ABZR87_RS19050 0.64 +0.2 636,715 - ABZR87_RS19050 0.64 -0.1 636,924 + ABZR87_RS19050 0.76 -0.7 636,924 + ABZR87_RS19050 0.76 -1.0 636,924 + ABZR87_RS19050 0.76 +0.5 636,924 + ABZR87_RS19050 0.76 +0.8 636,924 + ABZR87_RS19050 0.76 -1.9 636,925 - ABZR87_RS19050 0.76 +0.2 636,925 - ABZR87_RS19050 0.76 -1.5 636,925 - ABZR87_RS19050 0.76 +0.7 636,981 + ABZR87_RS19050 0.79 +0.9 637,122 + ABZR87_RS19050 0.88 -0.4 637,192 - -0.4 637,367 - -0.0 637,374 + +0.3 637,400 + +0.6 637,417 + +0.1 637,417 + -0.0 637,417 + +0.8 637,418 - +0.1 637,418 - -1.1 637,464 + -0.1 637,464 + -0.2 637,465 - +0.6 637,465 - +0.4 637,465 - +0.5 637,692 + ABZR87_RS19055 0.26 +0.2 637,692 + ABZR87_RS19055 0.26 +2.0 637,693 - ABZR87_RS19055 0.26 +1.0 637,693 - ABZR87_RS19055 0.26 -0.9 637,693 - ABZR87_RS19055 0.26 +0.5 637,794 + ABZR87_RS19055 0.36 +0.4 637,794 + ABZR87_RS19055 0.36 -0.2 637,912 + ABZR87_RS19055 0.49 -0.5 637,913 - ABZR87_RS19055 0.49 +0.4 637,913 - ABZR87_RS19055 0.49 -0.8 637,913 - ABZR87_RS19055 0.49 +0.3 637,913 - ABZR87_RS19055 0.49 -0.1 637,913 - ABZR87_RS19055 0.49 -1.6 637,971 + ABZR87_RS19055 0.55 +0.3 637,971 + ABZR87_RS19055 0.55 +1.2 637,971 + ABZR87_RS19055 0.55 -0.1 637,972 - ABZR87_RS19055 0.55 -0.1 637,972 - ABZR87_RS19055 0.55 +1.2 637,992 + ABZR87_RS19055 0.57 -0.8 637,992 + ABZR87_RS19055 0.57 -0.5 638,296 + ABZR87_RS19055 0.88 -0.7 638,297 - ABZR87_RS19055 0.88 -0.8 638,297 - ABZR87_RS19055 0.88 +0.5
Or see this region's nucleotide sequence