Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18590

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18580 and ABZR87_RS18585 are separated by 419 nucleotidesABZR87_RS18585 and ABZR87_RS18590 are separated by 18 nucleotidesABZR87_RS18590 and ABZR87_RS18595 overlap by 1 nucleotides ABZR87_RS18580: ABZR87_RS18580 - dienelactone hydrolase family protein, at 522,259 to 522,963 _RS18580 ABZR87_RS18585: ABZR87_RS18585 - hypothetical protein, at 523,383 to 523,655 _RS18585 ABZR87_RS18590: ABZR87_RS18590 - NAD(P)/FAD-dependent oxidoreductase, at 523,674 to 525,296 _RS18590 ABZR87_RS18595: ABZR87_RS18595 - polyamine aminopropyltransferase, at 525,296 to 526,873 _RS18595 Position (kb) 523 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 522.674 kb on - strand, within ABZR87_RS18580at 522.674 kb on - strand, within ABZR87_RS18580at 522.674 kb on - strand, within ABZR87_RS18580at 522.694 kb on + strand, within ABZR87_RS18580at 522.694 kb on + strand, within ABZR87_RS18580at 522.694 kb on + strand, within ABZR87_RS18580at 522.694 kb on + strand, within ABZR87_RS18580at 522.695 kb on - strand, within ABZR87_RS18580at 522.695 kb on - strand, within ABZR87_RS18580at 522.695 kb on - strand, within ABZR87_RS18580at 522.829 kb on + strand, within ABZR87_RS18580at 522.830 kb on - strand, within ABZR87_RS18580at 522.895 kb on + strandat 522.961 kb on + strandat 522.962 kb on - strandat 523.049 kb on - strandat 523.050 kb on + strandat 523.050 kb on + strandat 523.051 kb on - strandat 523.088 kb on - strandat 523.088 kb on - strandat 523.095 kb on + strandat 523.095 kb on + strandat 523.096 kb on - strandat 523.096 kb on - strandat 523.102 kb on - strandat 523.107 kb on - strandat 523.161 kb on + strandat 523.162 kb on - strandat 523.162 kb on - strandat 523.162 kb on - strandat 523.205 kb on + strandat 523.205 kb on + strandat 523.220 kb on + strandat 523.220 kb on + strandat 523.251 kb on + strandat 523.251 kb on + strandat 523.304 kb on + strandat 523.304 kb on + strandat 523.305 kb on - strandat 523.305 kb on - strandat 523.305 kb on - strandat 523.305 kb on - strandat 523.408 kb on - strandat 523.458 kb on + strand, within ABZR87_RS18585at 523.458 kb on + strand, within ABZR87_RS18585at 523.458 kb on + strand, within ABZR87_RS18585at 523.459 kb on - strand, within ABZR87_RS18585at 523.459 kb on - strand, within ABZR87_RS18585at 523.515 kb on + strand, within ABZR87_RS18585at 523.516 kb on - strand, within ABZR87_RS18585at 523.516 kb on - strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.575 kb on + strand, within ABZR87_RS18585at 523.576 kb on - strand, within ABZR87_RS18585at 523.654 kb on - strandat 523.654 kb on - strandat 523.762 kb on + strandat 523.762 kb on + strandat 523.762 kb on + strandat 523.851 kb on + strand, within ABZR87_RS18590at 523.897 kb on + strand, within ABZR87_RS18590at 524.002 kb on + strand, within ABZR87_RS18590at 524.003 kb on - strand, within ABZR87_RS18590at 524.003 kb on - strand, within ABZR87_RS18590at 524.065 kb on + strand, within ABZR87_RS18590at 524.065 kb on + strand, within ABZR87_RS18590at 524.066 kb on - strand, within ABZR87_RS18590at 524.066 kb on - strand, within ABZR87_RS18590at 524.066 kb on - strand, within ABZR87_RS18590at 524.087 kb on - strand, within ABZR87_RS18590at 524.087 kb on - strand, within ABZR87_RS18590at 524.087 kb on - strand, within ABZR87_RS18590at 524.488 kb on + strand, within ABZR87_RS18590at 524.488 kb on + strand, within ABZR87_RS18590at 524.489 kb on - strand, within ABZR87_RS18590at 524.533 kb on + strand, within ABZR87_RS18590at 524.551 kb on + strand, within ABZR87_RS18590at 524.626 kb on - strand, within ABZR87_RS18590at 524.762 kb on + strand, within ABZR87_RS18590at 524.763 kb on - strand, within ABZR87_RS18590at 524.947 kb on + strand, within ABZR87_RS18590at 524.947 kb on + strand, within ABZR87_RS18590at 524.948 kb on - strand, within ABZR87_RS18590at 524.948 kb on - strand, within ABZR87_RS18590at 525.021 kb on + strand, within ABZR87_RS18590at 525.021 kb on + strand, within ABZR87_RS18590at 525.021 kb on + strand, within ABZR87_RS18590at 525.021 kb on + strand, within ABZR87_RS18590at 525.022 kb on - strand, within ABZR87_RS18590at 525.022 kb on - strand, within ABZR87_RS18590at 525.534 kb on + strand, within ABZR87_RS18595at 525.535 kb on - strand, within ABZR87_RS18595at 525.535 kb on - strand, within ABZR87_RS18595at 525.585 kb on + strand, within ABZR87_RS18595at 525.585 kb on + strand, within ABZR87_RS18595at 525.585 kb on + strand, within ABZR87_RS18595at 525.586 kb on - strand, within ABZR87_RS18595at 525.681 kb on + strand, within ABZR87_RS18595at 525.682 kb on - strand, within ABZR87_RS18595at 525.872 kb on + strand, within ABZR87_RS18595at 525.907 kb on - strand, within ABZR87_RS18595at 526.012 kb on - strand, within ABZR87_RS18595at 526.056 kb on + strand, within ABZR87_RS18595at 526.057 kb on - strand, within ABZR87_RS18595at 526.101 kb on + strand, within ABZR87_RS18595at 526.102 kb on - strand, within ABZR87_RS18595at 526.240 kb on + strand, within ABZR87_RS18595at 526.240 kb on + strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.257 kb on - strand, within ABZR87_RS18595

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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522,674 - ABZR87_RS18580 0.59 -0.2
522,674 - ABZR87_RS18580 0.59 +0.3
522,674 - ABZR87_RS18580 0.59 -0.8
522,694 + ABZR87_RS18580 0.62 +0.7
522,694 + ABZR87_RS18580 0.62 +0.2
522,694 + ABZR87_RS18580 0.62 -0.0
522,694 + ABZR87_RS18580 0.62 -0.4
522,695 - ABZR87_RS18580 0.62 -0.4
522,695 - ABZR87_RS18580 0.62 +0.2
522,695 - ABZR87_RS18580 0.62 +0.2
522,829 + ABZR87_RS18580 0.81 -0.3
522,830 - ABZR87_RS18580 0.81 -1.4
522,895 + -0.5
522,961 + -0.1
522,962 - +0.9
523,049 - -1.1
523,050 + +0.3
523,050 + +1.3
523,051 - +0.5
523,088 - +2.0
523,088 - +0.5
523,095 + +0.1
523,095 + -0.1
523,096 - -0.9
523,096 - +1.1
523,102 - +0.8
523,107 - +1.0
523,161 + +0.2
523,162 - +0.6
523,162 - -0.2
523,162 - -0.1
523,205 + +0.0
523,205 + -1.7
523,220 + +0.6
523,220 + -0.2
523,251 + -0.4
523,251 + +0.3
523,304 + +0.1
523,304 + +1.0
523,305 - -0.6
523,305 - -0.2
523,305 - -1.7
523,305 - -1.4
523,408 - +0.1
523,458 + ABZR87_RS18585 0.27 +0.6
523,458 + ABZR87_RS18585 0.27 -0.0
523,458 + ABZR87_RS18585 0.27 -0.1
523,459 - ABZR87_RS18585 0.28 -0.6
523,459 - ABZR87_RS18585 0.28 -2.9
523,515 + ABZR87_RS18585 0.48 -0.2
523,516 - ABZR87_RS18585 0.49 -1.2
523,516 - ABZR87_RS18585 0.49 -0.9
523,575 + ABZR87_RS18585 0.70 +0.5
523,575 + ABZR87_RS18585 0.70 +0.0
523,575 + ABZR87_RS18585 0.70 -0.2
523,575 + ABZR87_RS18585 0.70 -1.1
523,575 + ABZR87_RS18585 0.70 +0.2
523,575 + ABZR87_RS18585 0.70 +0.0
523,575 + ABZR87_RS18585 0.70 -1.0
523,575 + ABZR87_RS18585 0.70 +1.5
523,575 + ABZR87_RS18585 0.70 -1.0
523,575 + ABZR87_RS18585 0.70 -1.0
523,576 - ABZR87_RS18585 0.71 -0.0
523,654 - +0.7
523,654 - +0.3
523,762 + -0.2
523,762 + +0.4
523,762 + -0.2
523,851 + ABZR87_RS18590 0.11 +0.2
523,897 + ABZR87_RS18590 0.14 -0.4
524,002 + ABZR87_RS18590 0.20 +1.3
524,003 - ABZR87_RS18590 0.20 -0.8
524,003 - ABZR87_RS18590 0.20 -1.6
524,065 + ABZR87_RS18590 0.24 +0.2
524,065 + ABZR87_RS18590 0.24 -0.1
524,066 - ABZR87_RS18590 0.24 -0.9
524,066 - ABZR87_RS18590 0.24 -0.2
524,066 - ABZR87_RS18590 0.24 -0.4
524,087 - ABZR87_RS18590 0.25 -1.3
524,087 - ABZR87_RS18590 0.25 -1.5
524,087 - ABZR87_RS18590 0.25 -0.1
524,488 + ABZR87_RS18590 0.50 +0.2
524,488 + ABZR87_RS18590 0.50 -0.8
524,489 - ABZR87_RS18590 0.50 -0.1
524,533 + ABZR87_RS18590 0.53 +0.4
524,551 + ABZR87_RS18590 0.54 -0.3
524,626 - ABZR87_RS18590 0.59 +0.1
524,762 + ABZR87_RS18590 0.67 -0.3
524,763 - ABZR87_RS18590 0.67 -0.1
524,947 + ABZR87_RS18590 0.78 +0.4
524,947 + ABZR87_RS18590 0.78 -0.3
524,948 - ABZR87_RS18590 0.78 -0.3
524,948 - ABZR87_RS18590 0.78 +1.8
525,021 + ABZR87_RS18590 0.83 +0.1
525,021 + ABZR87_RS18590 0.83 -0.7
525,021 + ABZR87_RS18590 0.83 -0.0
525,021 + ABZR87_RS18590 0.83 -0.4
525,022 - ABZR87_RS18590 0.83 +0.8
525,022 - ABZR87_RS18590 0.83 +0.2
525,534 + ABZR87_RS18595 0.15 -0.3
525,535 - ABZR87_RS18595 0.15 +0.1
525,535 - ABZR87_RS18595 0.15 -1.2
525,585 + ABZR87_RS18595 0.18 -0.8
525,585 + ABZR87_RS18595 0.18 +0.1
525,585 + ABZR87_RS18595 0.18 -0.7
525,586 - ABZR87_RS18595 0.18 -0.5
525,681 + ABZR87_RS18595 0.24 -0.1
525,682 - ABZR87_RS18595 0.24 -1.1
525,872 + ABZR87_RS18595 0.37 +0.4
525,907 - ABZR87_RS18595 0.39 -0.2
526,012 - ABZR87_RS18595 0.45 -0.7
526,056 + ABZR87_RS18595 0.48 -2.8
526,057 - ABZR87_RS18595 0.48 -0.6
526,101 + ABZR87_RS18595 0.51 -1.9
526,102 - ABZR87_RS18595 0.51 +0.3
526,240 + ABZR87_RS18595 0.60 -1.4
526,240 + ABZR87_RS18595 0.60 -1.4
526,241 - ABZR87_RS18595 0.60 -0.1
526,241 - ABZR87_RS18595 0.60 +0.1
526,241 - ABZR87_RS18595 0.60 -0.1
526,241 - ABZR87_RS18595 0.60 -1.1
526,241 - ABZR87_RS18595 0.60 -0.8
526,241 - ABZR87_RS18595 0.60 +1.8
526,257 - ABZR87_RS18595 0.61 -0.5

Or see this region's nucleotide sequence