Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17925 and ABZR87_RS17930 are separated by 861 nucleotides ABZR87_RS17930 and ABZR87_RS17935 are separated by 76 nucleotides ABZR87_RS17935 and ABZR87_RS17940 are separated by 71 nucleotides
ABZR87_RS17925: ABZR87_RS17925 - SMP-30/gluconolactonase/LRE family protein, at 377,219 to 378,115
_RS17925
ABZR87_RS17930: ABZR87_RS17930 - flagellar transcriptional regulator FlhD, at 378,977 to 379,294
_RS17930
ABZR87_RS17935: ABZR87_RS17935 - flagellar transcriptional regulator FlhC, at 379,371 to 379,931
_RS17935
ABZR87_RS17940: ABZR87_RS17940 - hypothetical protein, at 380,003 to 380,374
_RS17940
Position (kb) 378
379
380 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 378.013 kb on + strand, within ABZR87_RS17925 at 378.013 kb on + strand, within ABZR87_RS17925 at 378.078 kb on + strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.154 kb on - strand at 378.154 kb on - strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.164 kb on + strand at 378.226 kb on - strand at 378.298 kb on - strand at 378.298 kb on - strand at 378.354 kb on + strand at 378.387 kb on + strand at 378.387 kb on + strand at 378.387 kb on + strand at 378.388 kb on - strand at 378.434 kb on - strand at 378.444 kb on + strand at 378.444 kb on + strand at 378.444 kb on + strand at 378.445 kb on - strand at 378.445 kb on - strand at 378.466 kb on + strand at 378.559 kb on - strand at 378.585 kb on - strand at 378.585 kb on - strand at 378.585 kb on - strand at 378.585 kb on - strand at 378.659 kb on + strand at 378.660 kb on - strand at 378.660 kb on - strand at 378.660 kb on - strand at 378.674 kb on - strand at 378.719 kb on + strand at 378.720 kb on - strand at 378.738 kb on - strand at 378.738 kb on - strand at 378.738 kb on - strand at 378.738 kb on - strand at 378.738 kb on - strand at 378.741 kb on + strand at 378.796 kb on + strand at 378.808 kb on + strand at 378.808 kb on + strand at 378.809 kb on - strand at 378.809 kb on - strand at 378.809 kb on - strand at 378.809 kb on - strand at 378.809 kb on - strand at 378.892 kb on + strand at 378.893 kb on - strand at 378.907 kb on - strand at 378.907 kb on - strand at 378.949 kb on + strand at 378.949 kb on + strand at 378.949 kb on + strand at 378.950 kb on - strand at 378.950 kb on - strand at 378.955 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.974 kb on + strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 378.975 kb on - strand at 379.025 kb on + strand, within ABZR87_RS17930 at 379.025 kb on + strand, within ABZR87_RS17930 at 379.025 kb on + strand, within ABZR87_RS17930 at 379.025 kb on + strand, within ABZR87_RS17930 at 379.025 kb on + strand, within ABZR87_RS17930 at 379.026 kb on - strand, within ABZR87_RS17930 at 379.026 kb on - strand, within ABZR87_RS17930 at 379.026 kb on - strand, within ABZR87_RS17930 at 379.026 kb on - strand, within ABZR87_RS17930 at 379.346 kb on + strand at 379.346 kb on + strand at 379.346 kb on + strand at 379.346 kb on + strand at 379.346 kb on + strand at 379.347 kb on - strand at 379.347 kb on - strand at 379.347 kb on - strand at 379.500 kb on + strand, within ABZR87_RS17935 at 379.500 kb on + strand, within ABZR87_RS17935 at 379.500 kb on + strand, within ABZR87_RS17935 at 379.501 kb on - strand, within ABZR87_RS17935 at 379.501 kb on - strand, within ABZR87_RS17935 at 379.608 kb on + strand, within ABZR87_RS17935 at 379.608 kb on + strand, within ABZR87_RS17935 at 379.609 kb on - strand, within ABZR87_RS17935 at 379.665 kb on + strand, within ABZR87_RS17935 at 379.665 kb on + strand, within ABZR87_RS17935 at 379.675 kb on - strand, within ABZR87_RS17935 at 379.932 kb on + strand at 379.933 kb on - strand at 379.965 kb on + strand at 379.965 kb on + strand at 379.966 kb on - strand at 379.966 kb on - strand at 379.966 kb on - strand at 379.966 kb on - strand at 379.974 kb on - strand at 380.025 kb on + strand at 380.026 kb on - strand at 380.026 kb on - strand at 380.031 kb on + strand at 380.037 kb on + strand at 380.043 kb on - strand, within ABZR87_RS17940 at 380.047 kb on - strand, within ABZR87_RS17940 at 380.062 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.082 kb on + strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.083 kb on - strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.088 kb on + strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.089 kb on - strand, within ABZR87_RS17940 at 380.212 kb on + strand, within ABZR87_RS17940 at 380.212 kb on + strand, within ABZR87_RS17940 at 380.213 kb on - strand, within ABZR87_RS17940 at 380.213 kb on - strand, within ABZR87_RS17940 at 380.213 kb on - strand, within ABZR87_RS17940
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 378,013 + ABZR87_RS17925 0.89 -0.9 378,013 + ABZR87_RS17925 0.89 +0.6 378,078 + +1.0 378,079 - +0.3 378,079 - +1.2 378,079 - -0.3 378,154 - +0.2 378,154 - -0.5 378,164 + +2.2 378,164 + +1.2 378,164 + +1.8 378,164 + +1.3 378,164 + +2.3 378,226 - -0.4 378,298 - +0.5 378,298 - +0.0 378,354 + +2.4 378,387 + +3.5 378,387 + +3.4 378,387 + +3.1 378,388 - +1.6 378,434 - +2.8 378,444 + +5.2 378,444 + +3.7 378,444 + +3.5 378,445 - +2.5 378,445 - +3.0 378,466 + +4.5 378,559 - +2.7 378,585 - +2.3 378,585 - +1.7 378,585 - +1.4 378,585 - +0.7 378,659 + +4.2 378,660 - +2.4 378,660 - +3.5 378,660 - +2.3 378,674 - +1.9 378,719 + +1.1 378,720 - +1.7 378,738 - +0.4 378,738 - +0.8 378,738 - +1.8 378,738 - +2.0 378,738 - +2.0 378,741 + +2.2 378,796 + +0.9 378,808 + +2.6 378,808 + +0.9 378,809 - +1.7 378,809 - +1.1 378,809 - -1.9 378,809 - +1.6 378,809 - +2.4 378,892 + +0.7 378,893 - +2.4 378,907 - +1.9 378,907 - +1.2 378,949 + +1.5 378,949 + +3.1 378,949 + +2.4 378,950 - +2.3 378,950 - +2.0 378,955 + +0.9 378,974 + +1.3 378,974 + +1.6 378,974 + +0.5 378,974 + +1.7 378,974 + +1.6 378,974 + +1.2 378,974 + -0.5 378,974 + +1.6 378,974 + +1.9 378,974 + +0.6 378,974 + +0.9 378,974 + +1.5 378,974 + +1.6 378,974 + +1.3 378,974 + +1.6 378,975 - +2.4 378,975 - +1.7 378,975 - +2.1 378,975 - +2.4 378,975 - +0.1 378,975 - +2.4 378,975 - +1.8 378,975 - +2.7 378,975 - +1.7 378,975 - +1.6 378,975 - +1.0 378,975 - +2.2 378,975 - +1.5 378,975 - +1.9 378,975 - +1.3 378,975 - +2.4 378,975 - +2.3 378,975 - +2.1 379,025 + ABZR87_RS17930 0.15 +2.5 379,025 + ABZR87_RS17930 0.15 +1.3 379,025 + ABZR87_RS17930 0.15 +1.0 379,025 + ABZR87_RS17930 0.15 +2.0 379,025 + ABZR87_RS17930 0.15 +1.3 379,026 - ABZR87_RS17930 0.15 +1.6 379,026 - ABZR87_RS17930 0.15 +1.5 379,026 - ABZR87_RS17930 0.15 +1.8 379,026 - ABZR87_RS17930 0.15 +1.8 379,346 + +1.0 379,346 + -2.1 379,346 + -0.9 379,346 + +0.9 379,346 + +0.1 379,347 - +0.7 379,347 - +0.4 379,347 - +1.5 379,500 + ABZR87_RS17935 0.23 +0.9 379,500 + ABZR87_RS17935 0.23 +0.9 379,500 + ABZR87_RS17935 0.23 +1.4 379,501 - ABZR87_RS17935 0.23 +1.1 379,501 - ABZR87_RS17935 0.23 +1.3 379,608 + ABZR87_RS17935 0.42 +0.8 379,608 + ABZR87_RS17935 0.42 +0.6 379,609 - ABZR87_RS17935 0.42 +0.4 379,665 + ABZR87_RS17935 0.52 -1.5 379,665 + ABZR87_RS17935 0.52 +1.8 379,675 - ABZR87_RS17935 0.54 +1.3 379,932 + -1.8 379,933 - +1.4 379,965 + +0.0 379,965 + -0.4 379,966 - -1.3 379,966 - -0.3 379,966 - -1.0 379,966 - -0.3 379,974 - +0.8 380,025 + +0.0 380,026 - +0.3 380,026 - +0.0 380,031 + -1.1 380,037 + +0.3 380,043 - ABZR87_RS17940 0.11 -0.7 380,047 - ABZR87_RS17940 0.12 +0.0 380,062 + ABZR87_RS17940 0.16 +0.3 380,082 + ABZR87_RS17940 0.21 -1.2 380,082 + ABZR87_RS17940 0.21 -1.2 380,082 + ABZR87_RS17940 0.21 -1.5 380,082 + ABZR87_RS17940 0.21 -0.9 380,082 + ABZR87_RS17940 0.21 +2.3 380,082 + ABZR87_RS17940 0.21 -0.9 380,082 + ABZR87_RS17940 0.21 +0.8 380,082 + ABZR87_RS17940 0.21 -0.9 380,082 + ABZR87_RS17940 0.21 -1.1 380,082 + ABZR87_RS17940 0.21 -1.0 380,082 + ABZR87_RS17940 0.21 -0.5 380,082 + ABZR87_RS17940 0.21 +0.4 380,082 + ABZR87_RS17940 0.21 -0.2 380,082 + ABZR87_RS17940 0.21 -0.6 380,082 + ABZR87_RS17940 0.21 -0.6 380,083 - ABZR87_RS17940 0.22 -0.0 380,083 - ABZR87_RS17940 0.22 +0.1 380,083 - ABZR87_RS17940 0.22 +1.2 380,083 - ABZR87_RS17940 0.22 -1.8 380,083 - ABZR87_RS17940 0.22 +0.5 380,083 - ABZR87_RS17940 0.22 -0.1 380,083 - ABZR87_RS17940 0.22 -0.4 380,083 - ABZR87_RS17940 0.22 +0.5 380,083 - ABZR87_RS17940 0.22 +0.2 380,088 + ABZR87_RS17940 0.23 +0.5 380,088 + ABZR87_RS17940 0.23 +0.2 380,088 + ABZR87_RS17940 0.23 -0.7 380,088 + ABZR87_RS17940 0.23 +0.0 380,088 + ABZR87_RS17940 0.23 -0.3 380,088 + ABZR87_RS17940 0.23 -0.6 380,088 + ABZR87_RS17940 0.23 -0.0 380,088 + ABZR87_RS17940 0.23 -0.1 380,089 - ABZR87_RS17940 0.23 +0.1 380,089 - ABZR87_RS17940 0.23 -1.5 380,089 - ABZR87_RS17940 0.23 -0.1 380,089 - ABZR87_RS17940 0.23 -1.3 380,089 - ABZR87_RS17940 0.23 +0.1 380,089 - ABZR87_RS17940 0.23 +0.4 380,089 - ABZR87_RS17940 0.23 +0.9 380,212 + ABZR87_RS17940 0.56 -0.0 380,212 + ABZR87_RS17940 0.56 -0.0 380,213 - ABZR87_RS17940 0.56 -0.6 380,213 - ABZR87_RS17940 0.56 +0.7 380,213 - ABZR87_RS17940 0.56 +0.3
Or see this region's nucleotide sequence