Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17885

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17880 and ABZR87_RS17885 are separated by 9 nucleotidesABZR87_RS17885 and ABZR87_RS17890 are separated by 155 nucleotidesABZR87_RS17890 and ABZR87_RS17895 are separated by 259 nucleotides ABZR87_RS17880: ABZR87_RS17880 - GNAT family protein, at 368,363 to 369,070 _RS17880 ABZR87_RS17885: ABZR87_RS17885 - membrane protein, at 369,080 to 370,696 _RS17885 ABZR87_RS17890: ABZR87_RS17890 - FlxA-like family protein, at 370,852 to 371,364 _RS17890 ABZR87_RS17895: ABZR87_RS17895 - ABC transporter ATP-binding protein, at 371,624 to 372,445 _RS17895 Position (kb) 369 370 371Strain fitness (log2 ratio) -2 -1 0 1 2at 368.109 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.113 kb on + strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.114 kb on - strandat 368.129 kb on + strandat 368.130 kb on - strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.141 kb on + strandat 368.142 kb on - strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.174 kb on + strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.175 kb on - strandat 368.227 kb on + strandat 368.260 kb on - strandat 368.382 kb on - strandat 368.459 kb on + strand, within ABZR87_RS17880at 368.460 kb on - strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.549 kb on + strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.550 kb on - strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.594 kb on + strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.595 kb on - strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.633 kb on + strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.634 kb on - strand, within ABZR87_RS17880at 368.822 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.918 kb on + strand, within ABZR87_RS17880at 368.919 kb on - strand, within ABZR87_RS17880at 369.081 kb on + strandat 369.082 kb on - strandat 369.100 kb on + strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.101 kb on - strandat 369.108 kb on + strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.109 kb on - strandat 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.426 kb on + strand, within ABZR87_RS17885at 369.427 kb on - strand, within ABZR87_RS17885at 369.538 kb on - strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.645 kb on + strand, within ABZR87_RS17885at 369.646 kb on - strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.666 kb on + strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.667 kb on - strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.668 kb on + strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.669 kb on - strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.735 kb on + strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.736 kb on - strand, within ABZR87_RS17885at 369.867 kb on + strand, within ABZR87_RS17885at 369.868 kb on - strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.029 kb on + strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.030 kb on - strand, within ABZR87_RS17885at 370.222 kb on + strand, within ABZR87_RS17885at 370.222 kb on + strand, within ABZR87_RS17885at 370.223 kb on - strand, within ABZR87_RS17885at 370.223 kb on - strand, within ABZR87_RS17885at 370.452 kb on + strand, within ABZR87_RS17885at 370.452 kb on + strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.453 kb on - strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.495 kb on + strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.496 kb on - strand, within ABZR87_RS17885at 370.569 kb on + strandat 370.569 kb on + strandat 370.570 kb on - strandat 370.570 kb on - strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.587 kb on + strandat 370.588 kb on - strandat 370.588 kb on - strandat 370.972 kb on + strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 370.973 kb on - strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.028 kb on + strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.029 kb on - strand, within ABZR87_RS17890at 371.307 kb on + strand, within ABZR87_RS17890at 371.386 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.401 kb on + strandat 371.402 kb on - strandat 371.402 kb on - strandat 371.530 kb on + strandat 371.530 kb on + strandat 371.531 kb on - strandat 371.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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368,109 + -0.3
368,113 + -0.2
368,113 + +0.5
368,113 + -0.6
368,113 + -0.9
368,113 + -1.5
368,113 + -0.2
368,114 - -1.2
368,114 - +0.4
368,114 - -0.0
368,114 - +0.3
368,114 - -1.6
368,114 - +1.8
368,114 - +1.1
368,129 + -0.1
368,130 - -0.9
368,141 + +0.4
368,141 + -0.5
368,141 + -0.4
368,142 - +0.2
368,174 + -0.1
368,174 + -0.3
368,174 + +1.0
368,175 - -0.5
368,175 - -0.8
368,175 - +0.7
368,175 - -0.3
368,175 - -1.5
368,227 + -0.2
368,260 - -0.5
368,382 - +0.3
368,459 + ABZR87_RS17880 0.14 -0.6
368,460 - ABZR87_RS17880 0.14 -0.5
368,549 + ABZR87_RS17880 0.26 -0.1
368,549 + ABZR87_RS17880 0.26 -0.3
368,549 + ABZR87_RS17880 0.26 +0.1
368,549 + ABZR87_RS17880 0.26 -0.7
368,549 + ABZR87_RS17880 0.26 -0.9
368,549 + ABZR87_RS17880 0.26 -0.0
368,549 + ABZR87_RS17880 0.26 -0.9
368,549 + ABZR87_RS17880 0.26 +0.1
368,549 + ABZR87_RS17880 0.26 -0.3
368,549 + ABZR87_RS17880 0.26 -0.4
368,550 - ABZR87_RS17880 0.26 +0.1
368,550 - ABZR87_RS17880 0.26 -0.3
368,550 - ABZR87_RS17880 0.26 -0.5
368,550 - ABZR87_RS17880 0.26 -1.6
368,550 - ABZR87_RS17880 0.26 -0.2
368,550 - ABZR87_RS17880 0.26 -0.9
368,550 - ABZR87_RS17880 0.26 -1.0
368,550 - ABZR87_RS17880 0.26 -0.0
368,594 + ABZR87_RS17880 0.33 -1.1
368,594 + ABZR87_RS17880 0.33 +0.5
368,594 + ABZR87_RS17880 0.33 -0.7
368,594 + ABZR87_RS17880 0.33 +0.2
368,595 - ABZR87_RS17880 0.33 -0.1
368,595 - ABZR87_RS17880 0.33 -0.8
368,595 - ABZR87_RS17880 0.33 -1.7
368,595 - ABZR87_RS17880 0.33 -0.1
368,595 - ABZR87_RS17880 0.33 -0.1
368,633 + ABZR87_RS17880 0.38 -0.3
368,633 + ABZR87_RS17880 0.38 -1.3
368,634 - ABZR87_RS17880 0.38 -0.2
368,634 - ABZR87_RS17880 0.38 -0.8
368,634 - ABZR87_RS17880 0.38 +0.1
368,634 - ABZR87_RS17880 0.38 -0.4
368,822 + ABZR87_RS17880 0.65 -0.7
368,918 + ABZR87_RS17880 0.78 +0.5
368,918 + ABZR87_RS17880 0.78 -1.0
368,919 - ABZR87_RS17880 0.79 -0.6
369,081 + -1.1
369,082 - +0.6
369,100 + -0.9
369,101 - -1.1
369,101 - -0.9
369,101 - -0.9
369,108 + -0.4
369,109 - -0.2
369,109 - +0.8
369,109 - -0.9
369,426 + ABZR87_RS17885 0.21 -1.0
369,426 + ABZR87_RS17885 0.21 -0.5
369,426 + ABZR87_RS17885 0.21 +0.5
369,427 - ABZR87_RS17885 0.21 +0.6
369,538 - ABZR87_RS17885 0.28 -0.5
369,645 + ABZR87_RS17885 0.35 +0.5
369,645 + ABZR87_RS17885 0.35 -0.3
369,646 - ABZR87_RS17885 0.35 +0.1
369,666 + ABZR87_RS17885 0.36 -2.3
369,666 + ABZR87_RS17885 0.36 +0.4
369,666 + ABZR87_RS17885 0.36 +0.4
369,666 + ABZR87_RS17885 0.36 -0.3
369,666 + ABZR87_RS17885 0.36 +0.4
369,666 + ABZR87_RS17885 0.36 +0.8
369,666 + ABZR87_RS17885 0.36 -0.3
369,666 + ABZR87_RS17885 0.36 -0.5
369,667 - ABZR87_RS17885 0.36 +0.4
369,667 - ABZR87_RS17885 0.36 -0.3
369,667 - ABZR87_RS17885 0.36 -1.6
369,667 - ABZR87_RS17885 0.36 -1.1
369,667 - ABZR87_RS17885 0.36 -1.7
369,668 + ABZR87_RS17885 0.36 +0.7
369,668 + ABZR87_RS17885 0.36 +1.0
369,668 + ABZR87_RS17885 0.36 -0.1
369,669 - ABZR87_RS17885 0.36 +0.3
369,669 - ABZR87_RS17885 0.36 -0.2
369,669 - ABZR87_RS17885 0.36 -0.8
369,735 + ABZR87_RS17885 0.41 +1.5
369,735 + ABZR87_RS17885 0.41 -0.2
369,735 + ABZR87_RS17885 0.41 -0.4
369,736 - ABZR87_RS17885 0.41 +0.3
369,736 - ABZR87_RS17885 0.41 -0.4
369,736 - ABZR87_RS17885 0.41 -0.1
369,736 - ABZR87_RS17885 0.41 +1.4
369,867 + ABZR87_RS17885 0.49 +0.1
369,868 - ABZR87_RS17885 0.49 +0.2
370,029 + ABZR87_RS17885 0.59 -0.1
370,029 + ABZR87_RS17885 0.59 +1.4
370,029 + ABZR87_RS17885 0.59 +0.3
370,029 + ABZR87_RS17885 0.59 -0.3
370,029 + ABZR87_RS17885 0.59 -0.5
370,029 + ABZR87_RS17885 0.59 -0.3
370,029 + ABZR87_RS17885 0.59 +1.0
370,029 + ABZR87_RS17885 0.59 +0.4
370,029 + ABZR87_RS17885 0.59 +0.3
370,029 + ABZR87_RS17885 0.59 -0.1
370,029 + ABZR87_RS17885 0.59 +1.0
370,030 - ABZR87_RS17885 0.59 -0.9
370,030 - ABZR87_RS17885 0.59 +0.3
370,030 - ABZR87_RS17885 0.59 -1.1
370,030 - ABZR87_RS17885 0.59 +0.0
370,030 - ABZR87_RS17885 0.59 -0.7
370,030 - ABZR87_RS17885 0.59 +0.7
370,030 - ABZR87_RS17885 0.59 -0.5
370,030 - ABZR87_RS17885 0.59 +0.5
370,030 - ABZR87_RS17885 0.59 -0.9
370,222 + ABZR87_RS17885 0.71 +0.3
370,222 + ABZR87_RS17885 0.71 +1.3
370,223 - ABZR87_RS17885 0.71 +0.6
370,223 - ABZR87_RS17885 0.71 -0.7
370,452 + ABZR87_RS17885 0.85 -0.1
370,452 + ABZR87_RS17885 0.85 -0.7
370,453 - ABZR87_RS17885 0.85 +0.0
370,453 - ABZR87_RS17885 0.85 -0.7
370,453 - ABZR87_RS17885 0.85 +0.6
370,453 - ABZR87_RS17885 0.85 -1.3
370,495 + ABZR87_RS17885 0.88 -1.2
370,495 + ABZR87_RS17885 0.88 -0.6
370,495 + ABZR87_RS17885 0.88 -1.0
370,495 + ABZR87_RS17885 0.88 -0.3
370,496 - ABZR87_RS17885 0.88 -1.0
370,496 - ABZR87_RS17885 0.88 -0.8
370,496 - ABZR87_RS17885 0.88 +0.3
370,569 + -0.6
370,569 + +0.4
370,570 - -0.6
370,570 - -0.6
370,587 + +0.3
370,587 + +1.8
370,587 + +0.7
370,588 - -0.2
370,588 - -0.1
370,972 + ABZR87_RS17890 0.23 +0.0
370,973 - ABZR87_RS17890 0.24 -0.0
370,973 - ABZR87_RS17890 0.24 -0.7
371,028 + ABZR87_RS17890 0.34 +0.5
371,028 + ABZR87_RS17890 0.34 +0.5
371,029 - ABZR87_RS17890 0.35 -0.3
371,029 - ABZR87_RS17890 0.35 +0.9
371,029 - ABZR87_RS17890 0.35 -0.1
371,307 + ABZR87_RS17890 0.89 +1.2
371,386 + +0.9
371,401 + -0.8
371,401 + -1.7
371,401 + +1.0
371,402 - -1.5
371,402 - -1.1
371,530 + +1.3
371,530 + -0.8
371,531 - +0.1
371,540 - -0.7

Or see this region's nucleotide sequence