Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17775 and ABZR87_RS17780 are separated by 162 nucleotides ABZR87_RS17780 and ABZR87_RS17785 are separated by 146 nucleotides
ABZR87_RS17775: ABZR87_RS17775 - acyl-CoA dehydrogenase family protein, at 348,691 to 349,908
_RS17775
ABZR87_RS17780: ABZR87_RS17780 - LysR family transcriptional regulator, at 350,071 to 350,955
_RS17780
ABZR87_RS17785: ABZR87_RS17785 - AEC family transporter, at 351,102 to 352,055
_RS17785
Position (kb) 350
351 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 349.153 kb on + strand, within ABZR87_RS17775 at 349.154 kb on - strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.156 kb on + strand, within ABZR87_RS17775 at 349.157 kb on - strand, within ABZR87_RS17775 at 349.183 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.465 kb on + strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.466 kb on - strand, within ABZR87_RS17775 at 349.858 kb on + strand at 349.858 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.031 kb on + strand at 350.032 kb on - strand at 350.293 kb on + strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.294 kb on - strand, within ABZR87_RS17780 at 350.554 kb on + strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.555 kb on - strand, within ABZR87_RS17780 at 350.590 kb on + strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.591 kb on - strand, within ABZR87_RS17780 at 350.997 kb on + strand at 350.997 kb on + strand at 350.997 kb on + strand at 350.997 kb on + strand at 350.998 kb on - strand at 350.998 kb on - strand at 351.222 kb on + strand, within ABZR87_RS17785 at 351.222 kb on + strand, within ABZR87_RS17785 at 351.223 kb on - strand, within ABZR87_RS17785 at 351.223 kb on - strand, within ABZR87_RS17785 at 351.225 kb on + strand, within ABZR87_RS17785 at 351.225 kb on + strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.226 kb on - strand, within ABZR87_RS17785 at 351.423 kb on + strand, within ABZR87_RS17785 at 351.423 kb on + strand, within ABZR87_RS17785 at 351.424 kb on - strand, within ABZR87_RS17785 at 351.484 kb on + strand, within ABZR87_RS17785 at 351.544 kb on - strand, within ABZR87_RS17785 at 351.904 kb on - strand, within ABZR87_RS17785
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 349,153 + ABZR87_RS17775 0.38 -1.1 349,154 - ABZR87_RS17775 0.38 +0.5 349,156 + ABZR87_RS17775 0.38 +0.1 349,156 + ABZR87_RS17775 0.38 -0.5 349,157 - ABZR87_RS17775 0.38 +0.9 349,183 + ABZR87_RS17775 0.40 +0.6 349,465 + ABZR87_RS17775 0.64 +0.6 349,465 + ABZR87_RS17775 0.64 +1.3 349,465 + ABZR87_RS17775 0.64 -0.2 349,466 - ABZR87_RS17775 0.64 -0.2 349,466 - ABZR87_RS17775 0.64 -1.5 349,858 + -0.0 349,858 + -1.3 350,031 + -0.0 350,031 + +1.0 350,031 + +0.2 350,032 - -0.5 350,293 + ABZR87_RS17780 0.25 -0.9 350,294 - ABZR87_RS17780 0.25 +0.3 350,294 - ABZR87_RS17780 0.25 +0.0 350,554 + ABZR87_RS17780 0.55 -1.4 350,555 - ABZR87_RS17780 0.55 -0.0 350,555 - ABZR87_RS17780 0.55 +0.1 350,590 + ABZR87_RS17780 0.59 +0.4 350,591 - ABZR87_RS17780 0.59 -1.0 350,591 - ABZR87_RS17780 0.59 -1.8 350,591 - ABZR87_RS17780 0.59 +0.2 350,997 + +0.2 350,997 + -0.3 350,997 + +0.8 350,997 + -3.0 350,998 - -0.5 350,998 - -1.8 351,222 + ABZR87_RS17785 0.13 -0.2 351,222 + ABZR87_RS17785 0.13 +0.0 351,223 - ABZR87_RS17785 0.13 +0.2 351,223 - ABZR87_RS17785 0.13 +1.4 351,225 + ABZR87_RS17785 0.13 +0.5 351,225 + ABZR87_RS17785 0.13 -0.7 351,226 - ABZR87_RS17785 0.13 -0.5 351,226 - ABZR87_RS17785 0.13 -0.2 351,226 - ABZR87_RS17785 0.13 +0.4 351,226 - ABZR87_RS17785 0.13 -0.5 351,226 - ABZR87_RS17785 0.13 +0.2 351,226 - ABZR87_RS17785 0.13 -0.3 351,226 - ABZR87_RS17785 0.13 -0.6 351,423 + ABZR87_RS17785 0.34 +1.0 351,423 + ABZR87_RS17785 0.34 +1.0 351,424 - ABZR87_RS17785 0.34 -0.0 351,484 + ABZR87_RS17785 0.40 -0.0 351,544 - ABZR87_RS17785 0.46 -0.1 351,904 - ABZR87_RS17785 0.84 -0.4
Or see this region's nucleotide sequence