Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17695 and ABZR87_RS17700 are separated by 17 nucleotides ABZR87_RS17700 and ABZR87_RS17705 are separated by 135 nucleotides ABZR87_RS17705 and ABZR87_RS17710 are separated by 29 nucleotides ABZR87_RS17710 and ABZR87_RS17715 are separated by 35 nucleotides
ABZR87_RS17695: ABZR87_RS17695 - helix-turn-helix transcriptional regulator, at 334,996 to 335,634
_RS17695
ABZR87_RS17700: ABZR87_RS17700 - DUF1059 domain-containing protein, at 335,652 to 335,870
_RS17700
ABZR87_RS17705: ABZR87_RS17705 - DUF3455 domain-containing protein, at 336,006 to 336,536
_RS17705
ABZR87_RS17710: ABZR87_RS17710 - DUF488 family protein, at 336,566 to 336,964
_RS17710
ABZR87_RS17715: ABZR87_RS17715 - ABC transporter substrate-binding protein, at 337,000 to 338,028
_RS17715
Position (kb) 336
337 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.632 kb on + strand at 335.632 kb on + strand at 335.857 kb on + strand at 335.858 kb on - strand at 335.940 kb on + strand at 335.942 kb on + strand at 335.973 kb on + strand at 335.974 kb on - strand at 335.974 kb on - strand at 336.072 kb on + strand, within ABZR87_RS17705 at 336.172 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.302 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.345 kb on - strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.367 kb on + strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.368 kb on - strand, within ABZR87_RS17705 at 336.645 kb on + strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.646 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710 at 336.844 kb on - strand, within ABZR87_RS17710 at 336.956 kb on + strand at 336.956 kb on + strand at 336.957 kb on - strand at 337.002 kb on - strand at 337.002 kb on - strand at 337.002 kb on - strand at 337.002 kb on - strand at 337.097 kb on + strand at 337.097 kb on + strand at 337.097 kb on + strand at 337.098 kb on - strand at 337.199 kb on + strand, within ABZR87_RS17715 at 337.200 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.296 kb on - strand, within ABZR87_RS17715 at 337.313 kb on + strand, within ABZR87_RS17715 at 337.313 kb on + strand, within ABZR87_RS17715 at 337.314 kb on - strand, within ABZR87_RS17715 at 337.314 kb on - strand, within ABZR87_RS17715 at 337.314 kb on - strand, within ABZR87_RS17715 at 337.394 kb on + strand, within ABZR87_RS17715 at 337.395 kb on - strand, within ABZR87_RS17715 at 337.808 kb on + strand, within ABZR87_RS17715 at 337.819 kb on + strand, within ABZR87_RS17715 at 337.820 kb on - strand, within ABZR87_RS17715 at 337.892 kb on + strand, within ABZR87_RS17715 at 337.893 kb on - strand, within ABZR87_RS17715 at 337.905 kb on - strand, within ABZR87_RS17715
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 335,632 + +0.3 335,632 + -0.5 335,857 + +0.5 335,858 - -1.1 335,940 + -0.4 335,942 + -1.6 335,973 + +0.1 335,974 - -0.2 335,974 - -2.1 336,072 + ABZR87_RS17705 0.12 -1.5 336,172 - ABZR87_RS17705 0.31 +0.2 336,302 - ABZR87_RS17705 0.56 -1.6 336,302 - ABZR87_RS17705 0.56 +0.8 336,302 - ABZR87_RS17705 0.56 -1.1 336,345 - ABZR87_RS17705 0.64 -1.3 336,345 - ABZR87_RS17705 0.64 +1.8 336,367 + ABZR87_RS17705 0.68 -1.1 336,367 + ABZR87_RS17705 0.68 -0.4 336,367 + ABZR87_RS17705 0.68 +1.7 336,367 + ABZR87_RS17705 0.68 -1.2 336,367 + ABZR87_RS17705 0.68 +0.3 336,367 + ABZR87_RS17705 0.68 -2.1 336,367 + ABZR87_RS17705 0.68 -0.3 336,368 - ABZR87_RS17705 0.68 -1.5 336,368 - ABZR87_RS17705 0.68 -0.5 336,645 + ABZR87_RS17710 0.20 -0.6 336,646 - ABZR87_RS17710 0.20 +0.1 336,646 - ABZR87_RS17710 0.20 -0.0 336,646 - ABZR87_RS17710 0.20 +1.1 336,844 - ABZR87_RS17710 0.70 +0.2 336,844 - ABZR87_RS17710 0.70 -0.1 336,956 + -0.0 336,956 + -1.1 336,957 - -0.1 337,002 - -0.6 337,002 - +0.5 337,002 - +1.2 337,002 - +0.2 337,097 + -0.3 337,097 + +0.8 337,097 + -0.5 337,098 - -1.0 337,199 + ABZR87_RS17715 0.19 -0.1 337,200 - ABZR87_RS17715 0.19 -1.2 337,296 - ABZR87_RS17715 0.29 +1.4 337,296 - ABZR87_RS17715 0.29 +1.3 337,296 - ABZR87_RS17715 0.29 +1.5 337,296 - ABZR87_RS17715 0.29 -0.3 337,313 + ABZR87_RS17715 0.30 +0.3 337,313 + ABZR87_RS17715 0.30 -2.7 337,314 - ABZR87_RS17715 0.31 -1.0 337,314 - ABZR87_RS17715 0.31 -0.0 337,314 - ABZR87_RS17715 0.31 +0.2 337,394 + ABZR87_RS17715 0.38 -0.8 337,395 - ABZR87_RS17715 0.38 +0.4 337,808 + ABZR87_RS17715 0.79 -0.9 337,819 + ABZR87_RS17715 0.80 +1.4 337,820 - ABZR87_RS17715 0.80 +0.1 337,892 + ABZR87_RS17715 0.87 +0.2 337,893 - ABZR87_RS17715 0.87 -0.3 337,905 - ABZR87_RS17715 0.88 -1.1
Or see this region's nucleotide sequence