Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17420

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17410 and ABZR87_RS17415 overlap by 4 nucleotidesABZR87_RS17415 and ABZR87_RS17420 overlap by 4 nucleotidesABZR87_RS17420 and ABZR87_RS17425 are separated by 64 nucleotides ABZR87_RS17410: ABZR87_RS17410 - GTP-binding protein, at 264,939 to 266,069 _RS17410 ABZR87_RS17415: ABZR87_RS17415 - UbiX family flavin prenyltransferase, at 266,066 to 266,707 _RS17415 ABZR87_RS17420: ABZR87_RS17420 - UbiD family decarboxylase, at 266,704 to 268,095 _RS17420 ABZR87_RS17425: ABZR87_RS17425 - amidohydrolase family protein, at 268,160 to 269,083 _RS17425 Position (kb) 266 267 268 269Strain fitness (log2 ratio) -2 -1 0 1 2at 265.852 kb on + strand, within ABZR87_RS17410at 265.852 kb on + strand, within ABZR87_RS17410at 265.853 kb on - strand, within ABZR87_RS17410at 266.099 kb on - strandat 266.105 kb on + strandat 266.115 kb on - strandat 266.115 kb on - strandat 266.115 kb on - strandat 266.223 kb on + strand, within ABZR87_RS17415at 266.223 kb on + strand, within ABZR87_RS17415at 266.234 kb on + strand, within ABZR87_RS17415at 266.235 kb on - strand, within ABZR87_RS17415at 266.497 kb on + strand, within ABZR87_RS17415at 266.497 kb on + strand, within ABZR87_RS17415at 266.497 kb on + strand, within ABZR87_RS17415at 266.498 kb on - strand, within ABZR87_RS17415at 266.498 kb on - strand, within ABZR87_RS17415at 266.987 kb on + strand, within ABZR87_RS17420at 267.059 kb on + strand, within ABZR87_RS17420at 267.059 kb on + strand, within ABZR87_RS17420at 267.059 kb on + strand, within ABZR87_RS17420at 267.060 kb on - strand, within ABZR87_RS17420at 267.089 kb on + strand, within ABZR87_RS17420at 267.089 kb on + strand, within ABZR87_RS17420at 267.394 kb on - strand, within ABZR87_RS17420at 267.394 kb on - strand, within ABZR87_RS17420at 267.617 kb on + strand, within ABZR87_RS17420at 267.617 kb on + strand, within ABZR87_RS17420at 267.618 kb on - strand, within ABZR87_RS17420at 267.618 kb on - strand, within ABZR87_RS17420at 267.618 kb on - strand, within ABZR87_RS17420at 267.677 kb on + strand, within ABZR87_RS17420at 267.678 kb on - strand, within ABZR87_RS17420at 268.109 kb on + strandat 268.110 kb on - strandat 268.185 kb on + strandat 268.186 kb on - strandat 268.278 kb on + strand, within ABZR87_RS17425at 268.278 kb on + strand, within ABZR87_RS17425at 268.279 kb on - strand, within ABZR87_RS17425at 268.464 kb on + strand, within ABZR87_RS17425at 268.510 kb on - strand, within ABZR87_RS17425at 268.582 kb on - strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.641 kb on + strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.642 kb on - strand, within ABZR87_RS17425at 268.800 kb on + strand, within ABZR87_RS17425at 268.801 kb on - strand, within ABZR87_RS17425at 268.854 kb on + strand, within ABZR87_RS17425at 268.855 kb on - strand, within ABZR87_RS17425at 268.855 kb on - strand, within ABZR87_RS17425at 268.855 kb on - strand, within ABZR87_RS17425at 268.863 kb on + strand, within ABZR87_RS17425at 268.864 kb on - strand, within ABZR87_RS17425at 268.906 kb on - strand, within ABZR87_RS17425at 268.974 kb on + strand, within ABZR87_RS17425at 268.975 kb on - strand, within ABZR87_RS17425at 268.975 kb on - strand, within ABZR87_RS17425at 269.072 kb on - strandat 269.078 kb on - strandat 269.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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265,852 + ABZR87_RS17410 0.81 -1.4
265,852 + ABZR87_RS17410 0.81 -1.1
265,853 - ABZR87_RS17410 0.81 -0.2
266,099 - -1.8
266,105 + -1.3
266,115 - -0.2
266,115 - +0.1
266,115 - -0.3
266,223 + ABZR87_RS17415 0.24 +0.0
266,223 + ABZR87_RS17415 0.24 +0.8
266,234 + ABZR87_RS17415 0.26 -1.2
266,235 - ABZR87_RS17415 0.26 +0.6
266,497 + ABZR87_RS17415 0.67 +2.0
266,497 + ABZR87_RS17415 0.67 -0.3
266,497 + ABZR87_RS17415 0.67 -0.5
266,498 - ABZR87_RS17415 0.67 +0.2
266,498 - ABZR87_RS17415 0.67 -0.9
266,987 + ABZR87_RS17420 0.20 -1.1
267,059 + ABZR87_RS17420 0.26 +0.3
267,059 + ABZR87_RS17420 0.26 +0.4
267,059 + ABZR87_RS17420 0.26 -0.6
267,060 - ABZR87_RS17420 0.26 -1.4
267,089 + ABZR87_RS17420 0.28 +1.2
267,089 + ABZR87_RS17420 0.28 -0.4
267,394 - ABZR87_RS17420 0.50 +0.7
267,394 - ABZR87_RS17420 0.50 +0.3
267,617 + ABZR87_RS17420 0.66 +0.1
267,617 + ABZR87_RS17420 0.66 -0.8
267,618 - ABZR87_RS17420 0.66 +0.0
267,618 - ABZR87_RS17420 0.66 -0.1
267,618 - ABZR87_RS17420 0.66 -0.3
267,677 + ABZR87_RS17420 0.70 +0.3
267,678 - ABZR87_RS17420 0.70 +1.1
268,109 + -1.0
268,110 - -1.1
268,185 + -0.4
268,186 - -0.6
268,278 + ABZR87_RS17425 0.13 +0.5
268,278 + ABZR87_RS17425 0.13 -0.5
268,279 - ABZR87_RS17425 0.13 -0.1
268,464 + ABZR87_RS17425 0.33 -1.8
268,510 - ABZR87_RS17425 0.38 -0.1
268,582 - ABZR87_RS17425 0.46 -0.5
268,641 + ABZR87_RS17425 0.52 -0.8
268,641 + ABZR87_RS17425 0.52 +0.0
268,641 + ABZR87_RS17425 0.52 -1.0
268,641 + ABZR87_RS17425 0.52 -0.6
268,642 - ABZR87_RS17425 0.52 -0.7
268,642 - ABZR87_RS17425 0.52 +0.3
268,642 - ABZR87_RS17425 0.52 +0.3
268,642 - ABZR87_RS17425 0.52 -0.8
268,800 + ABZR87_RS17425 0.69 +0.6
268,801 - ABZR87_RS17425 0.69 -0.1
268,854 + ABZR87_RS17425 0.75 -0.9
268,855 - ABZR87_RS17425 0.75 +0.5
268,855 - ABZR87_RS17425 0.75 -0.8
268,855 - ABZR87_RS17425 0.75 -0.7
268,863 + ABZR87_RS17425 0.76 -0.2
268,864 - ABZR87_RS17425 0.76 -0.4
268,906 - ABZR87_RS17425 0.81 +0.3
268,974 + ABZR87_RS17425 0.88 +0.3
268,975 - ABZR87_RS17425 0.88 -2.2
268,975 - ABZR87_RS17425 0.88 -0.4
269,072 - -0.0
269,078 - -0.0
269,078 - -0.7

Or see this region's nucleotide sequence