Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17410 and ABZR87_RS17415 overlap by 4 nucleotides ABZR87_RS17415 and ABZR87_RS17420 overlap by 4 nucleotides
ABZR87_RS17410: ABZR87_RS17410 - GTP-binding protein, at 264,939 to 266,069
_RS17410
ABZR87_RS17415: ABZR87_RS17415 - UbiX family flavin prenyltransferase, at 266,066 to 266,707
_RS17415
ABZR87_RS17420: ABZR87_RS17420 - UbiD family decarboxylase, at 266,704 to 268,095
_RS17420
Position (kb) 266
267 Strain fitness (log2 ratio) -2
-1
0
1
2 at 265.447 kb on + strand, within ABZR87_RS17410 at 265.448 kb on - strand, within ABZR87_RS17410 at 265.550 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.852 kb on + strand, within ABZR87_RS17410 at 265.853 kb on - strand, within ABZR87_RS17410 at 266.099 kb on - strand at 266.105 kb on + strand at 266.115 kb on - strand at 266.115 kb on - strand at 266.115 kb on - strand at 266.223 kb on + strand, within ABZR87_RS17415 at 266.223 kb on + strand, within ABZR87_RS17415 at 266.234 kb on + strand, within ABZR87_RS17415 at 266.235 kb on - strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.497 kb on + strand, within ABZR87_RS17415 at 266.498 kb on - strand, within ABZR87_RS17415 at 266.498 kb on - strand, within ABZR87_RS17415 at 266.987 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.059 kb on + strand, within ABZR87_RS17420 at 267.060 kb on - strand, within ABZR87_RS17420 at 267.089 kb on + strand, within ABZR87_RS17420 at 267.089 kb on + strand, within ABZR87_RS17420 at 267.394 kb on - strand, within ABZR87_RS17420 at 267.394 kb on - strand, within ABZR87_RS17420 at 267.617 kb on + strand, within ABZR87_RS17420 at 267.617 kb on + strand, within ABZR87_RS17420 at 267.618 kb on - strand, within ABZR87_RS17420 at 267.618 kb on - strand, within ABZR87_RS17420 at 267.618 kb on - strand, within ABZR87_RS17420 at 267.677 kb on + strand, within ABZR87_RS17420 at 267.678 kb on - strand, within ABZR87_RS17420
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 265,447 + ABZR87_RS17410 0.45 -1.2 265,448 - ABZR87_RS17410 0.45 -0.6 265,550 + ABZR87_RS17410 0.54 +0.2 265,852 + ABZR87_RS17410 0.81 -1.4 265,852 + ABZR87_RS17410 0.81 -1.1 265,853 - ABZR87_RS17410 0.81 -0.2 266,099 - -1.8 266,105 + -1.3 266,115 - -0.2 266,115 - +0.1 266,115 - -0.3 266,223 + ABZR87_RS17415 0.24 +0.0 266,223 + ABZR87_RS17415 0.24 +0.8 266,234 + ABZR87_RS17415 0.26 -1.2 266,235 - ABZR87_RS17415 0.26 +0.6 266,497 + ABZR87_RS17415 0.67 +2.0 266,497 + ABZR87_RS17415 0.67 -0.3 266,497 + ABZR87_RS17415 0.67 -0.5 266,498 - ABZR87_RS17415 0.67 +0.2 266,498 - ABZR87_RS17415 0.67 -0.9 266,987 + ABZR87_RS17420 0.20 -1.1 267,059 + ABZR87_RS17420 0.26 +0.3 267,059 + ABZR87_RS17420 0.26 +0.4 267,059 + ABZR87_RS17420 0.26 -0.6 267,060 - ABZR87_RS17420 0.26 -1.4 267,089 + ABZR87_RS17420 0.28 +1.2 267,089 + ABZR87_RS17420 0.28 -0.4 267,394 - ABZR87_RS17420 0.50 +0.7 267,394 - ABZR87_RS17420 0.50 +0.3 267,617 + ABZR87_RS17420 0.66 +0.1 267,617 + ABZR87_RS17420 0.66 -0.8 267,618 - ABZR87_RS17420 0.66 +0.0 267,618 - ABZR87_RS17420 0.66 -0.1 267,618 - ABZR87_RS17420 0.66 -0.3 267,677 + ABZR87_RS17420 0.70 +0.3 267,678 - ABZR87_RS17420 0.70 +1.1
Or see this region's nucleotide sequence