Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17160

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17150 and ABZR87_RS17155 overlap by 4 nucleotidesABZR87_RS17155 and ABZR87_RS17160 are separated by 53 nucleotidesABZR87_RS17160 and ABZR87_RS17165 are separated by 315 nucleotides ABZR87_RS17150: ABZR87_RS17150 - ABC transporter permease subunit, at 193,345 to 194,118 _RS17150 ABZR87_RS17155: ABZR87_RS17155 - amino acid ABC transporter permease, at 194,115 to 194,825 _RS17155 ABZR87_RS17160: ABZR87_RS17160 - ABC transporter substrate-binding protein, at 194,879 to 195,766 _RS17160 ABZR87_RS17165: ABZR87_RS17165 - diguanylate cyclase, at 196,082 to 197,731 _RS17165 Position (kb) 194 195 196Strain fitness (log2 ratio) -2 -1 0 1 2 3at 193.882 kb on + strand, within ABZR87_RS17150at 194.084 kb on + strandat 194.085 kb on - strandat 194.085 kb on - strandat 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.215 kb on + strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.216 kb on - strand, within ABZR87_RS17155at 194.282 kb on + strand, within ABZR87_RS17155at 194.283 kb on - strand, within ABZR87_RS17155at 194.284 kb on + strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.285 kb on - strand, within ABZR87_RS17155at 194.509 kb on + strand, within ABZR87_RS17155at 194.510 kb on - strand, within ABZR87_RS17155at 194.645 kb on - strand, within ABZR87_RS17155at 194.668 kb on - strand, within ABZR87_RS17155at 194.836 kb on + strandat 194.836 kb on + strandat 194.837 kb on - strandat 194.949 kb on + strandat 194.949 kb on + strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 194.950 kb on - strandat 195.048 kb on + strand, within ABZR87_RS17160at 195.049 kb on - strand, within ABZR87_RS17160at 195.049 kb on - strand, within ABZR87_RS17160at 195.049 kb on - strand, within ABZR87_RS17160at 195.195 kb on + strand, within ABZR87_RS17160at 195.195 kb on + strand, within ABZR87_RS17160at 195.196 kb on - strand, within ABZR87_RS17160at 195.196 kb on - strand, within ABZR87_RS17160at 195.215 kb on - strand, within ABZR87_RS17160at 195.220 kb on - strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.308 kb on + strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.309 kb on - strand, within ABZR87_RS17160at 195.348 kb on + strand, within ABZR87_RS17160at 195.348 kb on + strand, within ABZR87_RS17160at 195.349 kb on - strand, within ABZR87_RS17160at 195.511 kb on - strand, within ABZR87_RS17160at 195.801 kb on + strandat 195.844 kb on + strandat 195.846 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.848 kb on + strandat 195.849 kb on - strandat 195.849 kb on - strandat 195.849 kb on - strandat 195.926 kb on - strandat 195.939 kb on - strandat 195.985 kb on - strandat 196.015 kb on + strandat 196.015 kb on + strandat 196.016 kb on - strandat 196.016 kb on - strandat 196.277 kb on + strand, within ABZR87_RS17165at 196.278 kb on - strand, within ABZR87_RS17165at 196.332 kb on + strand, within ABZR87_RS17165at 196.332 kb on + strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.333 kb on - strand, within ABZR87_RS17165at 196.529 kb on + strand, within ABZR87_RS17165at 196.529 kb on + strand, within ABZR87_RS17165at 196.529 kb on + strand, within ABZR87_RS17165at 196.530 kb on - strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.535 kb on + strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.536 kb on - strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.601 kb on + strand, within ABZR87_RS17165at 196.602 kb on - strand, within ABZR87_RS17165at 196.602 kb on - strand, within ABZR87_RS17165at 196.677 kb on - strand, within ABZR87_RS17165at 196.677 kb on - strand, within ABZR87_RS17165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
remove
193,882 + ABZR87_RS17150 0.69 +0.4
194,084 + -0.4
194,085 - -1.4
194,085 - -1.4
194,215 + ABZR87_RS17155 0.14 -1.4
194,215 + ABZR87_RS17155 0.14 +2.3
194,215 + ABZR87_RS17155 0.14 +0.6
194,215 + ABZR87_RS17155 0.14 -0.7
194,215 + ABZR87_RS17155 0.14 -1.1
194,215 + ABZR87_RS17155 0.14 -0.8
194,215 + ABZR87_RS17155 0.14 +1.9
194,215 + ABZR87_RS17155 0.14 -0.0
194,216 - ABZR87_RS17155 0.14 +0.3
194,216 - ABZR87_RS17155 0.14 +0.1
194,216 - ABZR87_RS17155 0.14 -0.3
194,216 - ABZR87_RS17155 0.14 +0.1
194,282 + ABZR87_RS17155 0.23 -0.7
194,283 - ABZR87_RS17155 0.24 +1.1
194,284 + ABZR87_RS17155 0.24 +1.5
194,285 - ABZR87_RS17155 0.24 -0.5
194,285 - ABZR87_RS17155 0.24 +0.8
194,285 - ABZR87_RS17155 0.24 -0.4
194,285 - ABZR87_RS17155 0.24 -0.8
194,509 + ABZR87_RS17155 0.55 +0.4
194,510 - ABZR87_RS17155 0.56 +1.1
194,645 - ABZR87_RS17155 0.75 +1.2
194,668 - ABZR87_RS17155 0.78 -0.2
194,836 + +0.7
194,836 + +1.2
194,837 - +0.2
194,949 + -2.2
194,949 + -0.5
194,950 - -0.8
194,950 - -0.4
194,950 - +0.6
194,950 - +0.8
194,950 - +0.2
194,950 - +1.5
194,950 - +0.3
195,048 + ABZR87_RS17160 0.19 -0.1
195,049 - ABZR87_RS17160 0.19 -0.3
195,049 - ABZR87_RS17160 0.19 +0.6
195,049 - ABZR87_RS17160 0.19 +1.0
195,195 + ABZR87_RS17160 0.36 -1.2
195,195 + ABZR87_RS17160 0.36 +0.3
195,196 - ABZR87_RS17160 0.36 -0.4
195,196 - ABZR87_RS17160 0.36 -1.1
195,215 - ABZR87_RS17160 0.38 -2.0
195,220 - ABZR87_RS17160 0.38 +1.2
195,308 + ABZR87_RS17160 0.48 -1.1
195,308 + ABZR87_RS17160 0.48 -0.2
195,308 + ABZR87_RS17160 0.48 -0.3
195,308 + ABZR87_RS17160 0.48 -0.1
195,308 + ABZR87_RS17160 0.48 +0.3
195,308 + ABZR87_RS17160 0.48 +0.6
195,309 - ABZR87_RS17160 0.48 -0.6
195,309 - ABZR87_RS17160 0.48 -0.6
195,309 - ABZR87_RS17160 0.48 +2.0
195,309 - ABZR87_RS17160 0.48 -0.2
195,348 + ABZR87_RS17160 0.53 -0.5
195,348 + ABZR87_RS17160 0.53 -0.1
195,349 - ABZR87_RS17160 0.53 -0.4
195,511 - ABZR87_RS17160 0.71 -1.4
195,801 + -0.1
195,844 + -0.2
195,846 + -0.9
195,848 + -0.4
195,848 + +0.1
195,848 + -1.0
195,848 + +1.0
195,848 + +0.5
195,848 + -0.2
195,848 + +0.5
195,849 - +0.1
195,849 - -0.0
195,849 - -1.0
195,926 - +0.4
195,939 - -0.7
195,985 - -1.0
196,015 + -1.4
196,015 + -0.9
196,016 - +0.8
196,016 - +1.6
196,277 + ABZR87_RS17165 0.12 -0.5
196,278 - ABZR87_RS17165 0.12 -0.6
196,332 + ABZR87_RS17165 0.15 +0.1
196,332 + ABZR87_RS17165 0.15 -1.5
196,333 - ABZR87_RS17165 0.15 +0.5
196,333 - ABZR87_RS17165 0.15 +1.0
196,333 - ABZR87_RS17165 0.15 +3.0
196,333 - ABZR87_RS17165 0.15 +0.9
196,529 + ABZR87_RS17165 0.27 +0.9
196,529 + ABZR87_RS17165 0.27 -0.8
196,529 + ABZR87_RS17165 0.27 +0.2
196,530 - ABZR87_RS17165 0.27 +0.2
196,535 + ABZR87_RS17165 0.27 +0.1
196,535 + ABZR87_RS17165 0.27 -0.7
196,535 + ABZR87_RS17165 0.27 +0.9
196,535 + ABZR87_RS17165 0.27 -0.3
196,535 + ABZR87_RS17165 0.27 +0.3
196,536 - ABZR87_RS17165 0.28 -1.2
196,536 - ABZR87_RS17165 0.28 -0.3
196,536 - ABZR87_RS17165 0.28 +0.8
196,536 - ABZR87_RS17165 0.28 +0.8
196,601 + ABZR87_RS17165 0.31 -0.7
196,601 + ABZR87_RS17165 0.31 -0.3
196,601 + ABZR87_RS17165 0.31 +0.3
196,601 + ABZR87_RS17165 0.31 +1.0
196,602 - ABZR87_RS17165 0.32 +0.5
196,602 - ABZR87_RS17165 0.32 -0.3
196,677 - ABZR87_RS17165 0.36 +0.2
196,677 - ABZR87_RS17165 0.36 +1.1

Or see this region's nucleotide sequence