Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11370

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11365 and ABZR87_RS11370 are separated by 147 nucleotidesABZR87_RS11370 and ABZR87_RS11375 are separated by 14 nucleotides ABZR87_RS11365: ABZR87_RS11365 - replicative DNA helicase, at 2,408,992 to 2,410,380 _RS11365 ABZR87_RS11370: ABZR87_RS11370 - DUF47 domain-containing protein, at 2,410,528 to 2,411,154 _RS11370 ABZR87_RS11375: ABZR87_RS11375 - inorganic phosphate transporter, at 2,411,169 to 2,412,179 _RS11375 Position (kb) 2410 2411 2412Strain fitness (log2 ratio) -3 -2 -1 0 1at 2410.374 kb on + strandat 2410.375 kb on - strandat 2410.375 kb on - strandat 2410.379 kb on - strandat 2410.379 kb on - strandat 2410.385 kb on + strandat 2410.386 kb on - strandat 2410.386 kb on - strandat 2410.386 kb on - strandat 2410.386 kb on - strandat 2410.386 kb on - strandat 2410.386 kb on - strandat 2410.386 kb on - strandat 2410.388 kb on + strandat 2410.388 kb on + strandat 2410.388 kb on + strandat 2410.388 kb on + strandat 2410.388 kb on + strandat 2410.388 kb on + strandat 2410.388 kb on + strandat 2410.388 kb on + strandat 2410.389 kb on - strandat 2410.389 kb on - strandat 2410.452 kb on + strandat 2410.453 kb on - strandat 2410.570 kb on + strandat 2410.570 kb on + strandat 2410.570 kb on + strandat 2410.831 kb on + strand, within ABZR87_RS11370at 2410.832 kb on - strand, within ABZR87_RS11370at 2410.832 kb on - strand, within ABZR87_RS11370at 2411.074 kb on + strand, within ABZR87_RS11370at 2411.074 kb on + strand, within ABZR87_RS11370at 2411.074 kb on + strand, within ABZR87_RS11370at 2411.075 kb on - strand, within ABZR87_RS11370at 2411.174 kb on + strandat 2411.174 kb on + strandat 2411.174 kb on + strandat 2411.174 kb on + strandat 2411.175 kb on - strandat 2411.175 kb on - strandat 2411.175 kb on - strandat 2411.175 kb on - strandat 2411.175 kb on - strandat 2411.206 kb on + strandat 2411.207 kb on - strandat 2411.207 kb on - strandat 2411.207 kb on - strandat 2411.314 kb on + strand, within ABZR87_RS11375at 2411.315 kb on - strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.418 kb on + strand, within ABZR87_RS11375at 2411.419 kb on - strand, within ABZR87_RS11375at 2411.473 kb on - strand, within ABZR87_RS11375at 2411.475 kb on + strand, within ABZR87_RS11375at 2411.475 kb on + strand, within ABZR87_RS11375at 2411.475 kb on + strand, within ABZR87_RS11375at 2411.476 kb on - strand, within ABZR87_RS11375at 2411.618 kb on + strand, within ABZR87_RS11375at 2411.619 kb on - strand, within ABZR87_RS11375at 2411.619 kb on - strand, within ABZR87_RS11375at 2411.727 kb on + strand, within ABZR87_RS11375at 2411.728 kb on - strand, within ABZR87_RS11375at 2411.728 kb on - strand, within ABZR87_RS11375at 2411.728 kb on - strand, within ABZR87_RS11375at 2411.774 kb on + strand, within ABZR87_RS11375at 2411.813 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.853 kb on + strand, within ABZR87_RS11375at 2411.854 kb on - strand, within ABZR87_RS11375at 2411.854 kb on - strand, within ABZR87_RS11375at 2411.854 kb on - strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.020 kb on + strand, within ABZR87_RS11375at 2412.021 kb on - strand, within ABZR87_RS11375

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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2,410,374 + +0.9
2,410,375 - +1.5
2,410,375 - -0.7
2,410,379 - +0.3
2,410,379 - +0.5
2,410,385 + +0.8
2,410,386 - -0.4
2,410,386 - -0.8
2,410,386 - +0.3
2,410,386 - +0.6
2,410,386 - -2.0
2,410,386 - -0.2
2,410,386 - -1.0
2,410,388 + +0.5
2,410,388 + +0.1
2,410,388 + +0.1
2,410,388 + +1.3
2,410,388 + +0.0
2,410,388 + -0.5
2,410,388 + +0.6
2,410,388 + -0.4
2,410,389 - -1.2
2,410,389 - -1.4
2,410,452 + -0.2
2,410,453 - -0.8
2,410,570 + +0.2
2,410,570 + -1.8
2,410,570 + -0.3
2,410,831 + ABZR87_RS11370 0.48 -2.6
2,410,832 - ABZR87_RS11370 0.48 -2.2
2,410,832 - ABZR87_RS11370 0.48 -1.8
2,411,074 + ABZR87_RS11370 0.87 -1.3
2,411,074 + ABZR87_RS11370 0.87 -0.9
2,411,074 + ABZR87_RS11370 0.87 -0.8
2,411,075 - ABZR87_RS11370 0.87 -1.0
2,411,174 + -1.4
2,411,174 + -2.1
2,411,174 + -0.1
2,411,174 + +0.1
2,411,175 - -0.8
2,411,175 - -1.7
2,411,175 - -2.2
2,411,175 - -0.0
2,411,175 - +0.2
2,411,206 + -1.4
2,411,207 - -1.4
2,411,207 - -2.9
2,411,207 - -1.4
2,411,314 + ABZR87_RS11375 0.14 -1.0
2,411,315 - ABZR87_RS11375 0.14 -2.1
2,411,418 + ABZR87_RS11375 0.25 -0.4
2,411,418 + ABZR87_RS11375 0.25 -1.4
2,411,418 + ABZR87_RS11375 0.25 +0.9
2,411,418 + ABZR87_RS11375 0.25 -0.3
2,411,418 + ABZR87_RS11375 0.25 -0.2
2,411,419 - ABZR87_RS11375 0.25 -1.2
2,411,473 - ABZR87_RS11375 0.30 -1.3
2,411,475 + ABZR87_RS11375 0.30 -0.2
2,411,475 + ABZR87_RS11375 0.30 +0.2
2,411,475 + ABZR87_RS11375 0.30 -1.0
2,411,476 - ABZR87_RS11375 0.30 -2.8
2,411,618 + ABZR87_RS11375 0.44 -0.2
2,411,619 - ABZR87_RS11375 0.45 +0.0
2,411,619 - ABZR87_RS11375 0.45 -0.9
2,411,727 + ABZR87_RS11375 0.55 -1.4
2,411,728 - ABZR87_RS11375 0.55 -0.6
2,411,728 - ABZR87_RS11375 0.55 -0.4
2,411,728 - ABZR87_RS11375 0.55 -0.6
2,411,774 + ABZR87_RS11375 0.60 -1.4
2,411,813 + ABZR87_RS11375 0.64 +0.3
2,411,853 + ABZR87_RS11375 0.68 +0.1
2,411,853 + ABZR87_RS11375 0.68 -1.2
2,411,853 + ABZR87_RS11375 0.68 -0.1
2,411,853 + ABZR87_RS11375 0.68 -0.7
2,411,853 + ABZR87_RS11375 0.68 -1.6
2,411,853 + ABZR87_RS11375 0.68 -0.6
2,411,854 - ABZR87_RS11375 0.68 -0.9
2,411,854 - ABZR87_RS11375 0.68 -1.7
2,411,854 - ABZR87_RS11375 0.68 -1.2
2,412,020 + ABZR87_RS11375 0.84 -0.3
2,412,020 + ABZR87_RS11375 0.84 -1.0
2,412,020 + ABZR87_RS11375 0.84 +0.0
2,412,020 + ABZR87_RS11375 0.84 -0.4
2,412,020 + ABZR87_RS11375 0.84 -0.7
2,412,020 + ABZR87_RS11375 0.84 -2.0
2,412,020 + ABZR87_RS11375 0.84 -0.8
2,412,021 - ABZR87_RS11375 0.84 +0.7

Or see this region's nucleotide sequence