Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11365 and ABZR87_RS11370 are separated by 147 nucleotides ABZR87_RS11370 and ABZR87_RS11375 are separated by 14 nucleotides
ABZR87_RS11365: ABZR87_RS11365 - replicative DNA helicase, at 2,408,992 to 2,410,380
_RS11365
ABZR87_RS11370: ABZR87_RS11370 - DUF47 domain-containing protein, at 2,410,528 to 2,411,154
_RS11370
ABZR87_RS11375: ABZR87_RS11375 - inorganic phosphate transporter, at 2,411,169 to 2,412,179
_RS11375
Position (kb)
2410
2411
2412 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2410.374 kb on + strand at 2410.375 kb on - strand at 2410.375 kb on - strand at 2410.379 kb on - strand at 2410.379 kb on - strand at 2410.385 kb on + strand at 2410.386 kb on - strand at 2410.386 kb on - strand at 2410.386 kb on - strand at 2410.386 kb on - strand at 2410.386 kb on - strand at 2410.386 kb on - strand at 2410.386 kb on - strand at 2410.388 kb on + strand at 2410.388 kb on + strand at 2410.388 kb on + strand at 2410.388 kb on + strand at 2410.388 kb on + strand at 2410.388 kb on + strand at 2410.388 kb on + strand at 2410.388 kb on + strand at 2410.389 kb on - strand at 2410.389 kb on - strand at 2410.452 kb on + strand at 2410.453 kb on - strand at 2410.570 kb on + strand at 2410.570 kb on + strand at 2410.570 kb on + strand at 2410.831 kb on + strand, within ABZR87_RS11370 at 2410.832 kb on - strand, within ABZR87_RS11370 at 2410.832 kb on - strand, within ABZR87_RS11370 at 2411.074 kb on + strand, within ABZR87_RS11370 at 2411.074 kb on + strand, within ABZR87_RS11370 at 2411.074 kb on + strand, within ABZR87_RS11370 at 2411.075 kb on - strand, within ABZR87_RS11370 at 2411.174 kb on + strand at 2411.174 kb on + strand at 2411.174 kb on + strand at 2411.174 kb on + strand at 2411.175 kb on - strand at 2411.175 kb on - strand at 2411.175 kb on - strand at 2411.175 kb on - strand at 2411.175 kb on - strand at 2411.206 kb on + strand at 2411.207 kb on - strand at 2411.207 kb on - strand at 2411.207 kb on - strand at 2411.314 kb on + strand, within ABZR87_RS11375 at 2411.315 kb on - strand, within ABZR87_RS11375 at 2411.418 kb on + strand, within ABZR87_RS11375 at 2411.418 kb on + strand, within ABZR87_RS11375 at 2411.418 kb on + strand, within ABZR87_RS11375 at 2411.418 kb on + strand, within ABZR87_RS11375 at 2411.418 kb on + strand, within ABZR87_RS11375 at 2411.419 kb on - strand, within ABZR87_RS11375 at 2411.473 kb on - strand, within ABZR87_RS11375 at 2411.475 kb on + strand, within ABZR87_RS11375 at 2411.475 kb on + strand, within ABZR87_RS11375 at 2411.475 kb on + strand, within ABZR87_RS11375 at 2411.476 kb on - strand, within ABZR87_RS11375 at 2411.618 kb on + strand, within ABZR87_RS11375 at 2411.619 kb on - strand, within ABZR87_RS11375 at 2411.619 kb on - strand, within ABZR87_RS11375 at 2411.727 kb on + strand, within ABZR87_RS11375 at 2411.728 kb on - strand, within ABZR87_RS11375 at 2411.728 kb on - strand, within ABZR87_RS11375 at 2411.728 kb on - strand, within ABZR87_RS11375 at 2411.774 kb on + strand, within ABZR87_RS11375 at 2411.813 kb on + strand, within ABZR87_RS11375 at 2411.853 kb on + strand, within ABZR87_RS11375 at 2411.853 kb on + strand, within ABZR87_RS11375 at 2411.853 kb on + strand, within ABZR87_RS11375 at 2411.853 kb on + strand, within ABZR87_RS11375 at 2411.853 kb on + strand, within ABZR87_RS11375 at 2411.853 kb on + strand, within ABZR87_RS11375 at 2411.854 kb on - strand, within ABZR87_RS11375 at 2411.854 kb on - strand, within ABZR87_RS11375 at 2411.854 kb on - strand, within ABZR87_RS11375 at 2412.020 kb on + strand, within ABZR87_RS11375 at 2412.020 kb on + strand, within ABZR87_RS11375 at 2412.020 kb on + strand, within ABZR87_RS11375 at 2412.020 kb on + strand, within ABZR87_RS11375 at 2412.020 kb on + strand, within ABZR87_RS11375 at 2412.020 kb on + strand, within ABZR87_RS11375 at 2412.020 kb on + strand, within ABZR87_RS11375 at 2412.021 kb on - strand, within ABZR87_RS11375
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 2,410,374 + +0.9 2,410,375 - +1.5 2,410,375 - -0.7 2,410,379 - +0.3 2,410,379 - +0.5 2,410,385 + +0.8 2,410,386 - -0.4 2,410,386 - -0.8 2,410,386 - +0.3 2,410,386 - +0.6 2,410,386 - -2.0 2,410,386 - -0.2 2,410,386 - -1.0 2,410,388 + +0.5 2,410,388 + +0.1 2,410,388 + +0.1 2,410,388 + +1.3 2,410,388 + +0.0 2,410,388 + -0.5 2,410,388 + +0.6 2,410,388 + -0.4 2,410,389 - -1.2 2,410,389 - -1.4 2,410,452 + -0.2 2,410,453 - -0.8 2,410,570 + +0.2 2,410,570 + -1.8 2,410,570 + -0.3 2,410,831 + ABZR87_RS11370 0.48 -2.6 2,410,832 - ABZR87_RS11370 0.48 -2.2 2,410,832 - ABZR87_RS11370 0.48 -1.8 2,411,074 + ABZR87_RS11370 0.87 -1.3 2,411,074 + ABZR87_RS11370 0.87 -0.9 2,411,074 + ABZR87_RS11370 0.87 -0.8 2,411,075 - ABZR87_RS11370 0.87 -1.0 2,411,174 + -1.4 2,411,174 + -2.1 2,411,174 + -0.1 2,411,174 + +0.1 2,411,175 - -0.8 2,411,175 - -1.7 2,411,175 - -2.2 2,411,175 - -0.0 2,411,175 - +0.2 2,411,206 + -1.4 2,411,207 - -1.4 2,411,207 - -2.9 2,411,207 - -1.4 2,411,314 + ABZR87_RS11375 0.14 -1.0 2,411,315 - ABZR87_RS11375 0.14 -2.1 2,411,418 + ABZR87_RS11375 0.25 -0.4 2,411,418 + ABZR87_RS11375 0.25 -1.4 2,411,418 + ABZR87_RS11375 0.25 +0.9 2,411,418 + ABZR87_RS11375 0.25 -0.3 2,411,418 + ABZR87_RS11375 0.25 -0.2 2,411,419 - ABZR87_RS11375 0.25 -1.2 2,411,473 - ABZR87_RS11375 0.30 -1.3 2,411,475 + ABZR87_RS11375 0.30 -0.2 2,411,475 + ABZR87_RS11375 0.30 +0.2 2,411,475 + ABZR87_RS11375 0.30 -1.0 2,411,476 - ABZR87_RS11375 0.30 -2.8 2,411,618 + ABZR87_RS11375 0.44 -0.2 2,411,619 - ABZR87_RS11375 0.45 +0.0 2,411,619 - ABZR87_RS11375 0.45 -0.9 2,411,727 + ABZR87_RS11375 0.55 -1.4 2,411,728 - ABZR87_RS11375 0.55 -0.6 2,411,728 - ABZR87_RS11375 0.55 -0.4 2,411,728 - ABZR87_RS11375 0.55 -0.6 2,411,774 + ABZR87_RS11375 0.60 -1.4 2,411,813 + ABZR87_RS11375 0.64 +0.3 2,411,853 + ABZR87_RS11375 0.68 +0.1 2,411,853 + ABZR87_RS11375 0.68 -1.2 2,411,853 + ABZR87_RS11375 0.68 -0.1 2,411,853 + ABZR87_RS11375 0.68 -0.7 2,411,853 + ABZR87_RS11375 0.68 -1.6 2,411,853 + ABZR87_RS11375 0.68 -0.6 2,411,854 - ABZR87_RS11375 0.68 -0.9 2,411,854 - ABZR87_RS11375 0.68 -1.7 2,411,854 - ABZR87_RS11375 0.68 -1.2 2,412,020 + ABZR87_RS11375 0.84 -0.3 2,412,020 + ABZR87_RS11375 0.84 -1.0 2,412,020 + ABZR87_RS11375 0.84 +0.0 2,412,020 + ABZR87_RS11375 0.84 -0.4 2,412,020 + ABZR87_RS11375 0.84 -0.7 2,412,020 + ABZR87_RS11375 0.84 -2.0 2,412,020 + ABZR87_RS11375 0.84 -0.8 2,412,021 - ABZR87_RS11375 0.84 +0.7
Or see this region's nucleotide sequence