Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08920

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no_plant_rhizosphere sample 1; outgrowth in LB
1,892,089	+		ABZR87_RS08910	0.24	-1.4
1,892,130	+		ABZR87_RS08910	0.28	+1.0
1,892,131	-		ABZR87_RS08910	0.29	-0.8
1,892,131	-		ABZR87_RS08910	0.29	+0.7
1,892,131	-		ABZR87_RS08910	0.29	+0.8
1,892,133	+		ABZR87_RS08910	0.29	+0.0
1,892,133	+		ABZR87_RS08910	0.29	-0.4
1,892,133	+		ABZR87_RS08910	0.29	+0.1
1,892,133	+		ABZR87_RS08910	0.29	-0.7
1,892,134	-		ABZR87_RS08910	0.29	-0.2
1,892,134	-		ABZR87_RS08910	0.29	-0.3
1,892,168	+		ABZR87_RS08910	0.33	+0.7
1,892,168	+		ABZR87_RS08910	0.33	-1.1
1,892,169	-		ABZR87_RS08910	0.33	+1.0
1,892,297	+		ABZR87_RS08910	0.47	+0.1
1,892,297	+		ABZR87_RS08910	0.47	-0.8
1,892,297	+		ABZR87_RS08910	0.47	+1.2
1,892,297	+		ABZR87_RS08910	0.47	-0.5
1,892,297	+		ABZR87_RS08910	0.47	-0.1
1,892,297	+		ABZR87_RS08910	0.47	+2.1
1,892,298	-		ABZR87_RS08910	0.47	+0.9
1,892,298	-		ABZR87_RS08910	0.47	-0.4
1,892,298	-		ABZR87_RS08910	0.47	-1.0
1,892,304	+		ABZR87_RS08910	0.47	+0.9
1,892,304	+		ABZR87_RS08910	0.47	-0.5
1,892,304	+		ABZR87_RS08910	0.47	+0.2
1,892,304	+		ABZR87_RS08910	0.47	+1.8
1,892,304	+		ABZR87_RS08910	0.47	-0.4
1,892,304	+		ABZR87_RS08910	0.47	-0.7
1,892,304	+		ABZR87_RS08910	0.47	-1.3
1,892,305	-		ABZR87_RS08910	0.48	+0.1
1,892,305	-		ABZR87_RS08910	0.48	-1.2
1,892,305	-		ABZR87_RS08910	0.48	-0.1
1,892,305	-		ABZR87_RS08910	0.48	+1.3
1,892,305	-		ABZR87_RS08910	0.48	+0.2
1,892,305	-		ABZR87_RS08910	0.48	-0.4
1,892,305	-		ABZR87_RS08910	0.48	-1.0
1,892,305	-		ABZR87_RS08910	0.48	+0.5
1,892,376	+		ABZR87_RS08910	0.55	-0.9
1,892,376	+		ABZR87_RS08910	0.55	-1.0
1,892,376	+		ABZR87_RS08910	0.55	+0.5
1,892,376	+		ABZR87_RS08910	0.55	+0.1
1,892,422	+		ABZR87_RS08910	0.60	+0.5
1,892,562	+		ABZR87_RS08910	0.76	-0.3
1,892,587	+		ABZR87_RS08910	0.78	+0.5
1,892,588	-		ABZR87_RS08910	0.78	-0.3
1,892,660	+		ABZR87_RS08910	0.86	-1.1
1,892,825	+		ABZR87_RS08915	0.19	+0.2
1,892,826	-		ABZR87_RS08915	0.19	+0.6
1,892,867	-		ABZR87_RS08915	0.39	-0.1
1,892,982	+				+0.2
1,892,982	+				+0.4
1,892,982	+				-0.9
1,892,982	+				+0.9
1,892,982	+				-1.2
1,892,982	+				+0.7
1,892,982	+				-1.0
1,892,983	-				+0.4
1,892,983	-				+0.3
1,892,986	+				-1.2
1,892,986	+				+0.4
1,892,986	+				-2.5
1,892,986	+				-0.1
1,892,986	+				-1.4
1,892,986	+				+0.1
1,892,986	+				-0.2
1,892,986	+				-0.3
1,892,987	-				+0.3
1,892,987	-				-0.6
1,892,987	-				+0.2
1,892,987	-				-0.3
1,892,987	-				-1.3
1,892,987	-				+0.4
1,892,987	-				-1.8
1,892,987	-				-0.5
1,892,987	-				-1.1
1,893,031	+				+0.4
1,893,032	-				+0.1
1,893,032	-				+0.2
1,893,036	+				-0.7
1,893,037	-				-0.9
1,893,037	-				-0.7
1,893,037	-				-0.1
1,893,043	+				+0.1
1,893,043	+				+0.2
1,893,043	+				-0.6
1,893,044	-				-1.1
1,893,044	-				+0.4
1,893,062	+				-0.1
1,893,062	+				+0.6
1,893,062	+				+0.1
1,893,063	-				-0.7
1,893,063	-				-0.1
1,893,082	-				-0.2
1,893,109	+				+0.7
1,893,110	-				-1.2
1,893,197	+		ABZR87_RS08920	0.19	+1.8
1,893,197	+		ABZR87_RS08920	0.19	+1.2
1,893,199	+		ABZR87_RS08920	0.20	+1.0
1,893,199	+		ABZR87_RS08920	0.20	+0.6
1,893,199	+		ABZR87_RS08920	0.20	+0.6
1,893,200	-		ABZR87_RS08920	0.20	+0.8
1,893,200	-		ABZR87_RS08920	0.20	+1.7
1,893,206	-		ABZR87_RS08920	0.21	+0.9
1,893,206	-		ABZR87_RS08920	0.21	+1.3
1,893,246	+		ABZR87_RS08920	0.28	+1.7
1,893,247	-		ABZR87_RS08920	0.28	-0.4
1,893,247	-		ABZR87_RS08920	0.28	+1.3
1,893,261	+		ABZR87_RS08920	0.30	+1.6
1,893,262	-		ABZR87_RS08920	0.30	+1.2
1,893,262	-		ABZR87_RS08920	0.30	+1.2
1,893,262	-		ABZR87_RS08920	0.30	+1.0
1,893,349	-		ABZR87_RS08920	0.45	+1.0
1,893,379	+		ABZR87_RS08920	0.50	+0.4
1,893,379	+		ABZR87_RS08920	0.50	+1.6
1,893,380	-		ABZR87_RS08920	0.50	+1.1
1,893,380	-		ABZR87_RS08920	0.50	+1.7
1,893,380	-		ABZR87_RS08920	0.50	+1.0
1,893,381	+		ABZR87_RS08920	0.50	+1.6
1,893,381	+		ABZR87_RS08920	0.50	+0.6
1,893,381	+		ABZR87_RS08920	0.50	+1.2
1,893,381	+		ABZR87_RS08920	0.50	+1.1
1,893,381	+		ABZR87_RS08920	0.50	+0.8
1,893,381	+		ABZR87_RS08920	0.50	+0.8
1,893,381	+		ABZR87_RS08920	0.50	+1.0
1,893,381	+		ABZR87_RS08920	0.50	+1.0
1,893,381	+		ABZR87_RS08920	0.50	+1.3
1,893,382	-		ABZR87_RS08920	0.50	+1.0
1,893,382	-		ABZR87_RS08920	0.50	+1.0
1,893,382	-		ABZR87_RS08920	0.50	+2.0
1,893,382	-		ABZR87_RS08920	0.50	+1.7
1,893,382	-		ABZR87_RS08920	0.50	+0.8
1,893,382	-		ABZR87_RS08920	0.50	+1.0
1,893,382	-		ABZR87_RS08920	0.50	+2.8
1,893,382	-		ABZR87_RS08920	0.50	+0.8
1,893,382	-		ABZR87_RS08920	0.50	+1.4
1,893,382	-		ABZR87_RS08920	0.50	+0.5
1,893,446	+		ABZR87_RS08920	0.61	+1.0
1,893,446	+		ABZR87_RS08920	0.61	-0.0
1,893,446	+		ABZR87_RS08920	0.61	+1.0
1,893,446	+		ABZR87_RS08920	0.61	+2.1
1,893,447	-		ABZR87_RS08920	0.61	+1.6
1,893,447	-		ABZR87_RS08920	0.61	+0.3
1,893,465	+		ABZR87_RS08920	0.64	+2.1
1,893,465	+		ABZR87_RS08920	0.64	+0.8
1,893,465	+		ABZR87_RS08920	0.64	+1.3
1,893,466	-		ABZR87_RS08920	0.64	+1.6
1,893,466	-		ABZR87_RS08920	0.64	+0.2
1,893,466	-		ABZR87_RS08920	0.64	+1.9
1,893,665	+				+0.1
1,893,665	+				+0.2
1,893,665	+				-0.8
1,893,665	+				-0.4
1,893,666	-				+1.1
1,893,666	-				+0.7
1,893,666	-				+1.3
1,893,666	-				+0.3
1,893,666	-				-0.9
1,893,666	-				+0.5
1,893,666	-				+0.6
1,893,682	+				+0.3
1,893,682	+				+0.5
1,893,682	+				-0.4
1,893,682	+				-0.4
1,893,683	-				+0.1
1,893,683	-				+0.2
1,893,683	-				-0.0
1,893,683	-				+0.4
1,893,886	+		ABZR87_RS08925	0.41	+1.3
1,893,887	-		ABZR87_RS08925	0.41	+0.7
1,893,887	-		ABZR87_RS08925	0.41	+1.1
1,893,916	+		ABZR87_RS08925	0.47	+1.2
1,893,916	+		ABZR87_RS08925	0.47	+1.7
1,893,917	-		ABZR87_RS08925	0.47	+0.3
1,893,964	+		ABZR87_RS08925	0.57	+1.4
1,893,964	+		ABZR87_RS08925	0.57	+1.2
1,893,964	+		ABZR87_RS08925	0.57	+1.1
1,893,964	+		ABZR87_RS08925	0.57	+1.0
1,893,964	+		ABZR87_RS08925	0.57	-0.3
1,893,964	+		ABZR87_RS08925	0.57	+1.1
1,893,964	+		ABZR87_RS08925	0.57	+2.2
1,893,964	+		ABZR87_RS08925	0.57	+0.8
1,893,964	+		ABZR87_RS08925	0.57	+2.8
1,893,965	-		ABZR87_RS08925	0.57	+0.4
1,893,965	-		ABZR87_RS08925	0.57	+1.1
1,893,965	-		ABZR87_RS08925	0.57	+0.4
1,893,965	-		ABZR87_RS08925	0.57	+1.2
1,893,965	-		ABZR87_RS08925	0.57	+1.1
1,893,965	-		ABZR87_RS08925	0.57	+1.7
1,893,965	-		ABZR87_RS08925	0.57	+1.1
1,893,965	-		ABZR87_RS08925	0.57	+1.4
1,893,965	-		ABZR87_RS08925	0.57	+0.5
1,894,062	-		ABZR87_RS08925	0.77	-1.0
1,894,062	-		ABZR87_RS08925	0.77	+0.1
1,894,063	+		ABZR87_RS08925	0.77	+0.3
1,894,063	+		ABZR87_RS08925	0.77	+1.3
1,894,063	+		ABZR87_RS08925	0.77	+1.0
1,894,064	-		ABZR87_RS08925	0.78	+0.8
1,894,064	-		ABZR87_RS08925	0.78	+2.4
1,894,122	+		ABZR87_RS08925	0.90	+1.3
1,894,122	+		ABZR87_RS08925	0.90	+1.4
1,894,123	-		ABZR87_RS08925	0.90	+2.4
1,894,482	+				+2.3
1,894,482	+				-0.4
1,894,482	+				-0.1
1,894,483	-				+0.7
1,894,483	-				+0.7
1,894,483	-				+1.3
1,894,539	+				+1.0
1,894,632	+		ABZR87_RS08930	0.11	+1.0
1,894,633	-		ABZR87_RS08930	0.11	+1.1
1,894,633	-		ABZR87_RS08930	0.11	+0.9
1,894,659	+		ABZR87_RS08930	0.12	+3.2
1,894,671	+		ABZR87_RS08930	0.12	+1.0
1,894,671	+		ABZR87_RS08930	0.12	+1.3
1,894,672	-		ABZR87_RS08930	0.12	+1.0
1,894,672	-		ABZR87_RS08930	0.12	+2.8
1,894,672	-		ABZR87_RS08930	0.12	+1.2
1,894,672	-		ABZR87_RS08930	0.12	+0.5
1,894,672	-		ABZR87_RS08930	0.12	+2.1