Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06385 and ABZR87_RS06390 are separated by 85 nucleotides ABZR87_RS06390 and ABZR87_RS06395 are separated by 72 nucleotides ABZR87_RS06395 and ABZR87_RS06400 are separated by 101 nucleotides
ABZR87_RS06385: ABZR87_RS06385 - CHASE3 domain-containing protein, at 1,361,596 to 1,363,038
_RS06385
ABZR87_RS06390: ABZR87_RS06390 - entericidin A/B family lipoprotein, at 1,363,124 to 1,363,264
_RS06390
ABZR87_RS06395: ABZR87_RS06395 - response regulator, at 1,363,337 to 1,363,777
_RS06395
ABZR87_RS06400: ABZR87_RS06400 - response regulator transcription factor, at 1,363,879 to 1,364,511
_RS06400
Position (kb) 1363
1364 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 1362.282 kb on + strand, within ABZR87_RS06385 at 1362.606 kb on + strand, within ABZR87_RS06385 at 1362.607 kb on - strand, within ABZR87_RS06385 at 1362.607 kb on - strand, within ABZR87_RS06385 at 1362.607 kb on - strand, within ABZR87_RS06385 at 1362.667 kb on + strand, within ABZR87_RS06385 at 1362.668 kb on - strand, within ABZR87_RS06385 at 1362.668 kb on - strand, within ABZR87_RS06385 at 1362.706 kb on + strand, within ABZR87_RS06385 at 1362.706 kb on + strand, within ABZR87_RS06385 at 1362.706 kb on + strand, within ABZR87_RS06385 at 1363.036 kb on + strand at 1363.037 kb on - strand at 1363.037 kb on - strand at 1363.125 kb on + strand at 1363.125 kb on + strand at 1363.125 kb on + strand at 1363.125 kb on + strand at 1363.125 kb on + strand at 1363.126 kb on - strand at 1363.126 kb on - strand at 1363.126 kb on - strand at 1363.126 kb on - strand at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.228 kb on + strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.229 kb on - strand, within ABZR87_RS06390 at 1363.443 kb on + strand, within ABZR87_RS06395 at 1363.443 kb on + strand, within ABZR87_RS06395 at 1363.443 kb on + strand, within ABZR87_RS06395 at 1363.443 kb on + strand, within ABZR87_RS06395 at 1363.444 kb on - strand, within ABZR87_RS06395 at 1363.444 kb on - strand, within ABZR87_RS06395 at 1363.444 kb on - strand, within ABZR87_RS06395 at 1363.444 kb on - strand, within ABZR87_RS06395 at 1363.503 kb on + strand, within ABZR87_RS06395 at 1363.503 kb on + strand, within ABZR87_RS06395 at 1363.504 kb on - strand, within ABZR87_RS06395 at 1363.504 kb on - strand, within ABZR87_RS06395 at 1363.602 kb on + strand, within ABZR87_RS06395 at 1363.602 kb on + strand, within ABZR87_RS06395 at 1363.602 kb on + strand, within ABZR87_RS06395 at 1363.602 kb on + strand, within ABZR87_RS06395 at 1363.602 kb on + strand, within ABZR87_RS06395 at 1363.602 kb on + strand, within ABZR87_RS06395 at 1363.603 kb on - strand, within ABZR87_RS06395 at 1363.603 kb on - strand, within ABZR87_RS06395 at 1363.603 kb on - strand, within ABZR87_RS06395 at 1363.603 kb on - strand, within ABZR87_RS06395 at 1363.603 kb on - strand, within ABZR87_RS06395 at 1363.603 kb on - strand, within ABZR87_RS06395 at 1363.603 kb on - strand, within ABZR87_RS06395 at 1363.686 kb on + strand, within ABZR87_RS06395 at 1363.686 kb on + strand, within ABZR87_RS06395 at 1363.686 kb on + strand, within ABZR87_RS06395 at 1363.686 kb on + strand, within ABZR87_RS06395 at 1363.687 kb on - strand, within ABZR87_RS06395 at 1363.687 kb on - strand, within ABZR87_RS06395 at 1363.789 kb on - strand at 1363.812 kb on - strand at 1363.812 kb on - strand at 1363.812 kb on - strand at 1363.826 kb on + strand at 1363.826 kb on + strand at 1363.826 kb on + strand at 1363.826 kb on + strand at 1363.826 kb on + strand at 1363.826 kb on + strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.827 kb on - strand at 1363.830 kb on + strand at 1363.830 kb on + strand at 1363.830 kb on + strand at 1363.830 kb on + strand at 1363.831 kb on - strand at 1363.831 kb on - strand at 1363.880 kb on + strand at 1363.881 kb on - strand at 1363.907 kb on + strand at 1363.907 kb on + strand at 1363.907 kb on + strand at 1363.907 kb on + strand at 1363.908 kb on - strand at 1363.908 kb on - strand at 1363.908 kb on - strand at 1363.908 kb on - strand at 1363.908 kb on - strand at 1363.910 kb on + strand at 1363.910 kb on + strand at 1363.910 kb on + strand at 1363.911 kb on - strand at 1363.911 kb on - strand at 1363.911 kb on - strand at 1363.911 kb on - strand at 1363.964 kb on + strand, within ABZR87_RS06400 at 1363.965 kb on - strand, within ABZR87_RS06400 at 1363.965 kb on - strand, within ABZR87_RS06400 at 1363.965 kb on - strand, within ABZR87_RS06400 at 1364.141 kb on + strand, within ABZR87_RS06400 at 1364.141 kb on + strand, within ABZR87_RS06400 at 1364.141 kb on + strand, within ABZR87_RS06400 at 1364.141 kb on + strand, within ABZR87_RS06400 at 1364.141 kb on + strand, within ABZR87_RS06400 at 1364.141 kb on + strand, within ABZR87_RS06400 at 1364.142 kb on - strand, within ABZR87_RS06400 at 1364.142 kb on - strand, within ABZR87_RS06400 at 1364.142 kb on - strand, within ABZR87_RS06400 at 1364.164 kb on - strand, within ABZR87_RS06400 at 1364.210 kb on + strand, within ABZR87_RS06400 at 1364.210 kb on + strand, within ABZR87_RS06400 at 1364.246 kb on + strand, within ABZR87_RS06400 at 1364.246 kb on + strand, within ABZR87_RS06400 at 1364.247 kb on - strand, within ABZR87_RS06400
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 1,362,282 + ABZR87_RS06385 0.48 +6.2 1,362,606 + ABZR87_RS06385 0.70 +6.2 1,362,607 - ABZR87_RS06385 0.70 +6.2 1,362,607 - ABZR87_RS06385 0.70 +6.4 1,362,607 - ABZR87_RS06385 0.70 +1.1 1,362,667 + ABZR87_RS06385 0.74 +9.5 1,362,668 - ABZR87_RS06385 0.74 +6.6 1,362,668 - ABZR87_RS06385 0.74 +7.2 1,362,706 + ABZR87_RS06385 0.77 +6.3 1,362,706 + ABZR87_RS06385 0.77 +6.6 1,362,706 + ABZR87_RS06385 0.77 +6.7 1,363,036 + +1.1 1,363,037 - +0.6 1,363,037 - -1.0 1,363,125 + -0.4 1,363,125 + -1.3 1,363,125 + -0.6 1,363,125 + +0.5 1,363,125 + +2.4 1,363,126 - +1.8 1,363,126 - +1.3 1,363,126 - +0.4 1,363,126 - -0.2 1,363,228 + ABZR87_RS06390 0.74 +0.8 1,363,228 + ABZR87_RS06390 0.74 +0.5 1,363,228 + ABZR87_RS06390 0.74 -0.7 1,363,228 + ABZR87_RS06390 0.74 -0.5 1,363,228 + ABZR87_RS06390 0.74 -1.5 1,363,228 + ABZR87_RS06390 0.74 -0.1 1,363,228 + ABZR87_RS06390 0.74 +3.4 1,363,228 + ABZR87_RS06390 0.74 +0.0 1,363,228 + ABZR87_RS06390 0.74 -0.3 1,363,228 + ABZR87_RS06390 0.74 -1.1 1,363,229 - ABZR87_RS06390 0.74 +0.5 1,363,229 - ABZR87_RS06390 0.74 +0.6 1,363,229 - ABZR87_RS06390 0.74 +0.6 1,363,229 - ABZR87_RS06390 0.74 -0.4 1,363,229 - ABZR87_RS06390 0.74 -0.9 1,363,229 - ABZR87_RS06390 0.74 -0.8 1,363,229 - ABZR87_RS06390 0.74 -0.9 1,363,229 - ABZR87_RS06390 0.74 +2.0 1,363,229 - ABZR87_RS06390 0.74 +0.0 1,363,229 - ABZR87_RS06390 0.74 +0.2 1,363,229 - ABZR87_RS06390 0.74 -1.6 1,363,229 - ABZR87_RS06390 0.74 +0.3 1,363,229 - ABZR87_RS06390 0.74 +0.9 1,363,443 + ABZR87_RS06395 0.24 +1.4 1,363,443 + ABZR87_RS06395 0.24 +2.2 1,363,443 + ABZR87_RS06395 0.24 +1.8 1,363,443 + ABZR87_RS06395 0.24 +0.5 1,363,444 - ABZR87_RS06395 0.24 +0.9 1,363,444 - ABZR87_RS06395 0.24 +1.0 1,363,444 - ABZR87_RS06395 0.24 -2.1 1,363,444 - ABZR87_RS06395 0.24 -0.4 1,363,503 + ABZR87_RS06395 0.38 +0.4 1,363,503 + ABZR87_RS06395 0.38 -2.2 1,363,504 - ABZR87_RS06395 0.38 +0.6 1,363,504 - ABZR87_RS06395 0.38 +0.8 1,363,602 + ABZR87_RS06395 0.60 +0.5 1,363,602 + ABZR87_RS06395 0.60 +3.0 1,363,602 + ABZR87_RS06395 0.60 +0.8 1,363,602 + ABZR87_RS06395 0.60 +1.3 1,363,602 + ABZR87_RS06395 0.60 +1.1 1,363,602 + ABZR87_RS06395 0.60 +0.2 1,363,603 - ABZR87_RS06395 0.60 +1.9 1,363,603 - ABZR87_RS06395 0.60 +0.3 1,363,603 - ABZR87_RS06395 0.60 -0.1 1,363,603 - ABZR87_RS06395 0.60 +0.2 1,363,603 - ABZR87_RS06395 0.60 +1.9 1,363,603 - ABZR87_RS06395 0.60 +1.4 1,363,603 - ABZR87_RS06395 0.60 +1.0 1,363,686 + ABZR87_RS06395 0.79 +1.5 1,363,686 + ABZR87_RS06395 0.79 +2.7 1,363,686 + ABZR87_RS06395 0.79 +2.3 1,363,686 + ABZR87_RS06395 0.79 +0.8 1,363,687 - ABZR87_RS06395 0.79 +0.4 1,363,687 - ABZR87_RS06395 0.79 -0.1 1,363,789 - -0.5 1,363,812 - +1.4 1,363,812 - +1.0 1,363,812 - -1.7 1,363,826 + +0.3 1,363,826 + +1.3 1,363,826 + -0.2 1,363,826 + +1.1 1,363,826 + -0.3 1,363,826 + +0.1 1,363,827 - +0.5 1,363,827 - +3.1 1,363,827 - -0.8 1,363,827 - -1.0 1,363,827 - -0.2 1,363,827 - -1.1 1,363,827 - +0.4 1,363,827 - -0.9 1,363,827 - +0.3 1,363,827 - +0.1 1,363,827 - -1.9 1,363,827 - +2.0 1,363,830 + +0.7 1,363,830 + -0.8 1,363,830 + -0.8 1,363,830 + -1.6 1,363,831 - -0.8 1,363,831 - -0.3 1,363,880 + -0.8 1,363,881 - +0.7 1,363,907 + +4.4 1,363,907 + +4.5 1,363,907 + +4.2 1,363,907 + +4.9 1,363,908 - +5.1 1,363,908 - +3.6 1,363,908 - +4.9 1,363,908 - +4.0 1,363,908 - +4.1 1,363,910 + +4.3 1,363,910 + +4.6 1,363,910 + +4.6 1,363,911 - +4.3 1,363,911 - +3.6 1,363,911 - +5.3 1,363,911 - +4.6 1,363,964 + ABZR87_RS06400 0.13 +4.3 1,363,965 - ABZR87_RS06400 0.14 +3.9 1,363,965 - ABZR87_RS06400 0.14 +3.7 1,363,965 - ABZR87_RS06400 0.14 +4.7 1,364,141 + ABZR87_RS06400 0.41 +4.0 1,364,141 + ABZR87_RS06400 0.41 +4.7 1,364,141 + ABZR87_RS06400 0.41 +5.4 1,364,141 + ABZR87_RS06400 0.41 +4.1 1,364,141 + ABZR87_RS06400 0.41 +4.7 1,364,141 + ABZR87_RS06400 0.41 +4.5 1,364,142 - ABZR87_RS06400 0.42 +4.2 1,364,142 - ABZR87_RS06400 0.42 +4.4 1,364,142 - ABZR87_RS06400 0.42 +3.4 1,364,164 - ABZR87_RS06400 0.45 +4.0 1,364,210 + ABZR87_RS06400 0.52 +4.8 1,364,210 + ABZR87_RS06400 0.52 +4.7 1,364,246 + ABZR87_RS06400 0.58 +4.5 1,364,246 + ABZR87_RS06400 0.58 +3.9 1,364,247 - ABZR87_RS06400 0.58 +5.0
Or see this region's nucleotide sequence