Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04700

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04690 and ABZR87_RS04695 are separated by 71 nucleotidesABZR87_RS04695 and ABZR87_RS04700 are separated by 73 nucleotidesABZR87_RS04700 and ABZR87_RS04705 overlap by 4 nucleotidesABZR87_RS04705 and ABZR87_RS04710 are separated by 2 nucleotides ABZR87_RS04690: ABZR87_RS04690 - DMT family transporter, at 979,464 to 980,327 _RS04690 ABZR87_RS04695: ABZR87_RS04695 - hypothetical protein, at 980,399 to 980,788 _RS04695 ABZR87_RS04700: ABZR87_RS04700 - FAD-binding oxidoreductase, at 980,862 to 982,181 _RS04700 ABZR87_RS04705: ABZR87_RS04705 - amino acid ABC transporter ATP-binding protein, at 982,178 to 982,939 _RS04705 ABZR87_RS04710: ABZR87_RS04710 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 982,942 to 983,613 _RS04710 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1at 979.920 kb on + strand, within ABZR87_RS04690at 979.921 kb on - strand, within ABZR87_RS04690at 980.151 kb on + strand, within ABZR87_RS04690at 980.151 kb on + strand, within ABZR87_RS04690at 980.151 kb on + strand, within ABZR87_RS04690at 980.152 kb on - strand, within ABZR87_RS04690at 980.152 kb on - strand, within ABZR87_RS04690at 980.199 kb on + strand, within ABZR87_RS04690at 980.200 kb on - strand, within ABZR87_RS04690at 980.200 kb on - strand, within ABZR87_RS04690at 980.400 kb on + strandat 980.401 kb on - strandat 980.401 kb on - strandat 980.401 kb on - strandat 980.443 kb on + strand, within ABZR87_RS04695at 980.444 kb on - strand, within ABZR87_RS04695at 980.444 kb on - strand, within ABZR87_RS04695at 980.712 kb on + strand, within ABZR87_RS04695at 980.713 kb on - strand, within ABZR87_RS04695at 980.827 kb on - strandat 980.890 kb on + strandat 980.890 kb on + strandat 980.891 kb on - strandat 980.891 kb on - strandat 980.891 kb on - strandat 980.891 kb on - strandat 980.891 kb on - strandat 980.914 kb on + strandat 980.914 kb on + strandat 980.914 kb on + strandat 980.914 kb on + strandat 980.914 kb on + strandat 980.914 kb on + strandat 980.914 kb on + strandat 980.915 kb on - strandat 980.915 kb on - strandat 980.915 kb on - strandat 980.915 kb on - strandat 980.915 kb on - strandat 980.915 kb on - strandat 981.137 kb on - strand, within ABZR87_RS04700at 981.137 kb on - strand, within ABZR87_RS04700at 981.277 kb on + strand, within ABZR87_RS04700at 981.277 kb on + strand, within ABZR87_RS04700at 981.368 kb on + strand, within ABZR87_RS04700at 981.368 kb on + strand, within ABZR87_RS04700at 981.368 kb on + strand, within ABZR87_RS04700at 981.369 kb on - strand, within ABZR87_RS04700at 981.369 kb on - strand, within ABZR87_RS04700at 981.424 kb on + strand, within ABZR87_RS04700at 981.425 kb on - strand, within ABZR87_RS04700at 981.425 kb on - strand, within ABZR87_RS04700at 981.425 kb on - strand, within ABZR87_RS04700at 981.751 kb on + strand, within ABZR87_RS04700at 981.752 kb on - strand, within ABZR87_RS04700at 981.752 kb on - strand, within ABZR87_RS04700at 981.752 kb on - strand, within ABZR87_RS04700at 981.822 kb on + strand, within ABZR87_RS04700at 981.822 kb on + strand, within ABZR87_RS04700at 981.823 kb on - strand, within ABZR87_RS04700at 981.823 kb on - strand, within ABZR87_RS04700at 982.030 kb on + strand, within ABZR87_RS04700at 982.030 kb on + strand, within ABZR87_RS04700at 982.030 kb on + strand, within ABZR87_RS04700at 982.031 kb on - strand, within ABZR87_RS04700at 982.031 kb on - strand, within ABZR87_RS04700at 982.542 kb on + strand, within ABZR87_RS04705at 982.543 kb on - strand, within ABZR87_RS04705at 982.629 kb on + strand, within ABZR87_RS04705at 982.629 kb on + strand, within ABZR87_RS04705at 982.629 kb on + strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.630 kb on - strand, within ABZR87_RS04705at 982.782 kb on + strand, within ABZR87_RS04705at 982.782 kb on + strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 982.783 kb on - strand, within ABZR87_RS04705at 983.021 kb on + strand, within ABZR87_RS04710at 983.021 kb on + strand, within ABZR87_RS04710at 983.022 kb on - strand, within ABZR87_RS04710at 983.022 kb on - strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.042 kb on + strand, within ABZR87_RS04710at 983.043 kb on - strand, within ABZR87_RS04710at 983.162 kb on + strand, within ABZR87_RS04710at 983.163 kb on - strand, within ABZR87_RS04710

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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979,920 + ABZR87_RS04690 0.53 +0.2
979,921 - ABZR87_RS04690 0.53 -0.9
980,151 + ABZR87_RS04690 0.80 +0.8
980,151 + ABZR87_RS04690 0.80 -2.9
980,151 + ABZR87_RS04690 0.80 -0.8
980,152 - ABZR87_RS04690 0.80 -0.2
980,152 - ABZR87_RS04690 0.80 +0.6
980,199 + ABZR87_RS04690 0.85 +0.3
980,200 - ABZR87_RS04690 0.85 +0.2
980,200 - ABZR87_RS04690 0.85 +0.3
980,400 + +0.4
980,401 - -1.4
980,401 - +0.6
980,401 - -0.9
980,443 + ABZR87_RS04695 0.11 +0.2
980,444 - ABZR87_RS04695 0.12 +1.7
980,444 - ABZR87_RS04695 0.12 +0.1
980,712 + ABZR87_RS04695 0.80 +1.3
980,713 - ABZR87_RS04695 0.81 -0.4
980,827 - +0.7
980,890 + -0.3
980,890 + +0.4
980,891 - -0.4
980,891 - +0.6
980,891 - -1.6
980,891 - -1.3
980,891 - -0.3
980,914 + -0.9
980,914 + -0.3
980,914 + +0.0
980,914 + -2.3
980,914 + -0.3
980,914 + +0.2
980,914 + -0.2
980,915 - -1.2
980,915 - -0.9
980,915 - -0.9
980,915 - +0.1
980,915 - -0.4
980,915 - +0.0
981,137 - ABZR87_RS04700 0.21 -1.7
981,137 - ABZR87_RS04700 0.21 -1.3
981,277 + ABZR87_RS04700 0.31 +0.3
981,277 + ABZR87_RS04700 0.31 -1.1
981,368 + ABZR87_RS04700 0.38 -1.7
981,368 + ABZR87_RS04700 0.38 -1.2
981,368 + ABZR87_RS04700 0.38 +0.9
981,369 - ABZR87_RS04700 0.38 -0.1
981,369 - ABZR87_RS04700 0.38 +0.6
981,424 + ABZR87_RS04700 0.43 -0.4
981,425 - ABZR87_RS04700 0.43 -0.6
981,425 - ABZR87_RS04700 0.43 -0.5
981,425 - ABZR87_RS04700 0.43 -0.0
981,751 + ABZR87_RS04700 0.67 +0.9
981,752 - ABZR87_RS04700 0.67 -1.5
981,752 - ABZR87_RS04700 0.67 -0.8
981,752 - ABZR87_RS04700 0.67 -0.2
981,822 + ABZR87_RS04700 0.73 -0.8
981,822 + ABZR87_RS04700 0.73 -0.9
981,823 - ABZR87_RS04700 0.73 +0.4
981,823 - ABZR87_RS04700 0.73 -1.0
982,030 + ABZR87_RS04700 0.88 -0.4
982,030 + ABZR87_RS04700 0.88 +0.9
982,030 + ABZR87_RS04700 0.88 +0.1
982,031 - ABZR87_RS04700 0.89 -0.6
982,031 - ABZR87_RS04700 0.89 -0.3
982,542 + ABZR87_RS04705 0.48 +0.6
982,543 - ABZR87_RS04705 0.48 -1.0
982,629 + ABZR87_RS04705 0.59 +1.7
982,629 + ABZR87_RS04705 0.59 +0.2
982,629 + ABZR87_RS04705 0.59 -1.0
982,630 - ABZR87_RS04705 0.59 +0.4
982,630 - ABZR87_RS04705 0.59 +0.0
982,630 - ABZR87_RS04705 0.59 -2.1
982,630 - ABZR87_RS04705 0.59 -1.5
982,630 - ABZR87_RS04705 0.59 +1.0
982,782 + ABZR87_RS04705 0.79 +1.3
982,782 + ABZR87_RS04705 0.79 +0.2
982,783 - ABZR87_RS04705 0.79 +1.5
982,783 - ABZR87_RS04705 0.79 +0.8
982,783 - ABZR87_RS04705 0.79 -1.4
982,783 - ABZR87_RS04705 0.79 +0.6
982,783 - ABZR87_RS04705 0.79 -1.0
982,783 - ABZR87_RS04705 0.79 -0.4
983,021 + ABZR87_RS04710 0.12 -0.0
983,021 + ABZR87_RS04710 0.12 -0.1
983,022 - ABZR87_RS04710 0.12 -0.9
983,022 - ABZR87_RS04710 0.12 -0.5
983,042 + ABZR87_RS04710 0.15 +0.1
983,042 + ABZR87_RS04710 0.15 +0.4
983,042 + ABZR87_RS04710 0.15 -0.0
983,043 - ABZR87_RS04710 0.15 +0.1
983,162 + ABZR87_RS04710 0.33 -0.3
983,163 - ABZR87_RS04710 0.33 -0.6

Or see this region's nucleotide sequence