Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04635 and ABZR87_RS04640 are separated by 48 nucleotides ABZR87_RS04640 and ABZR87_RS04645 are separated by 4 nucleotides ABZR87_RS04645 and ABZR87_RS04650 are separated by 168 nucleotides
ABZR87_RS04635: ABZR87_RS04635 - carboxymuconolactone decarboxylase family protein, at 969,832 to 970,269
_RS04635
ABZR87_RS04640: ABZR87_RS04640 - hypothetical protein, at 970,318 to 970,749
_RS04640
ABZR87_RS04645: ABZR87_RS04645 - MFS transporter, at 970,754 to 972,073
_RS04645
ABZR87_RS04650: ABZR87_RS04650 - LysR family transcriptional regulator, at 972,242 to 973,126
_RS04650
Position (kb) 970
971
972
973 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.789 kb on - strand at 969.809 kb on + strand at 969.810 kb on - strand at 969.810 kb on - strand at 969.810 kb on - strand at 969.819 kb on - strand at 969.819 kb on - strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.980 kb on - strand, within ABZR87_RS04635 at 969.980 kb on - strand, within ABZR87_RS04635 at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.594 kb on + strand, within ABZR87_RS04640 at 970.594 kb on + strand, within ABZR87_RS04640 at 970.594 kb on + strand, within ABZR87_RS04640 at 970.595 kb on - strand, within ABZR87_RS04640 at 970.715 kb on + strand at 970.716 kb on - strand at 970.716 kb on - strand at 970.716 kb on - strand at 970.904 kb on + strand, within ABZR87_RS04645 at 970.936 kb on + strand, within ABZR87_RS04645 at 970.936 kb on + strand, within ABZR87_RS04645 at 970.944 kb on + strand, within ABZR87_RS04645 at 970.944 kb on + strand, within ABZR87_RS04645 at 970.945 kb on - strand, within ABZR87_RS04645 at 970.945 kb on - strand, within ABZR87_RS04645 at 971.304 kb on + strand, within ABZR87_RS04645 at 971.304 kb on + strand, within ABZR87_RS04645 at 971.304 kb on + strand, within ABZR87_RS04645 at 971.304 kb on + strand, within ABZR87_RS04645 at 971.305 kb on - strand, within ABZR87_RS04645 at 971.305 kb on - strand, within ABZR87_RS04645 at 971.305 kb on - strand, within ABZR87_RS04645 at 971.306 kb on - strand, within ABZR87_RS04645 at 971.778 kb on + strand, within ABZR87_RS04645 at 971.778 kb on + strand, within ABZR87_RS04645 at 971.778 kb on + strand, within ABZR87_RS04645 at 971.778 kb on + strand, within ABZR87_RS04645 at 971.778 kb on + strand, within ABZR87_RS04645 at 971.779 kb on - strand, within ABZR87_RS04645 at 971.779 kb on - strand, within ABZR87_RS04645 at 971.779 kb on - strand, within ABZR87_RS04645 at 971.779 kb on - strand, within ABZR87_RS04645 at 971.827 kb on - strand, within ABZR87_RS04645 at 971.827 kb on - strand, within ABZR87_RS04645 at 971.866 kb on + strand, within ABZR87_RS04645 at 971.866 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.868 kb on + strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.869 kb on - strand, within ABZR87_RS04645 at 971.910 kb on + strand, within ABZR87_RS04645 at 971.910 kb on + strand, within ABZR87_RS04645 at 971.911 kb on - strand, within ABZR87_RS04645 at 971.911 kb on - strand, within ABZR87_RS04645 at 971.911 kb on - strand, within ABZR87_RS04645 at 971.956 kb on + strand at 971.956 kb on + strand at 971.956 kb on + strand at 971.956 kb on + strand at 971.956 kb on + strand at 971.956 kb on + strand at 971.956 kb on + strand at 971.957 kb on - strand at 971.957 kb on - strand at 971.957 kb on - strand at 971.957 kb on - strand at 971.957 kb on - strand at 971.957 kb on - strand at 971.957 kb on - strand at 971.957 kb on - strand at 972.065 kb on + strand at 972.065 kb on + strand at 972.065 kb on + strand at 972.065 kb on + strand at 972.065 kb on + strand at 972.065 kb on + strand at 972.065 kb on + strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.066 kb on - strand at 972.161 kb on - strand at 972.194 kb on + strand at 972.195 kb on - strand at 972.195 kb on - strand at 972.195 kb on - strand at 972.243 kb on + strand at 972.410 kb on - strand, within ABZR87_RS04650 at 972.417 kb on + strand, within ABZR87_RS04650 at 972.418 kb on - strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.453 kb on + strand, within ABZR87_RS04650 at 972.454 kb on - strand, within ABZR87_RS04650 at 972.484 kb on - strand, within ABZR87_RS04650 at 972.578 kb on - strand, within ABZR87_RS04650 at 972.840 kb on - strand, within ABZR87_RS04650 at 972.840 kb on - strand, within ABZR87_RS04650
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 969,788 + +0.3 969,788 + -0.2 969,788 + +0.9 969,788 + -0.1 969,788 + -1.2 969,788 + -0.4 969,788 + -0.8 969,788 + -0.0 969,789 - +0.3 969,809 + -0.8 969,810 - -1.7 969,810 - +0.1 969,810 - -0.5 969,819 - -0.7 969,819 - +0.2 969,853 + +0.2 969,853 + -0.0 969,853 + -0.3 969,853 + +0.7 969,854 - +1.2 969,854 - +1.4 969,854 - +0.0 969,854 - -0.0 969,979 + ABZR87_RS04635 0.34 +0.7 969,979 + ABZR87_RS04635 0.34 +1.3 969,979 + ABZR87_RS04635 0.34 -0.2 969,979 + ABZR87_RS04635 0.34 +0.1 969,979 + ABZR87_RS04635 0.34 -0.2 969,980 - ABZR87_RS04635 0.34 -1.5 969,980 - ABZR87_RS04635 0.34 +0.1 970,278 + +0.5 970,278 + -0.3 970,278 + +0.4 970,278 + -1.0 970,278 + -1.9 970,278 + -0.8 970,278 + -0.0 970,278 + +0.3 970,278 + -0.9 970,278 + +2.1 970,279 - -2.1 970,279 - -0.3 970,279 - +0.3 970,280 + -2.1 970,280 + -1.4 970,280 + -1.0 970,280 + +1.8 970,280 + +2.2 970,280 + +1.3 970,280 + +1.3 970,280 + -0.3 970,280 + -1.1 970,281 - -0.5 970,281 - +0.0 970,281 - -0.1 970,281 - -0.5 970,281 - +0.3 970,281 - +0.8 970,281 - +0.0 970,594 + ABZR87_RS04640 0.64 -0.5 970,594 + ABZR87_RS04640 0.64 +0.0 970,594 + ABZR87_RS04640 0.64 +0.1 970,595 - ABZR87_RS04640 0.64 +1.4 970,715 + +0.1 970,716 - -1.8 970,716 - -0.2 970,716 - -0.4 970,904 + ABZR87_RS04645 0.11 -0.1 970,936 + ABZR87_RS04645 0.14 -0.8 970,936 + ABZR87_RS04645 0.14 -1.6 970,944 + ABZR87_RS04645 0.14 +0.0 970,944 + ABZR87_RS04645 0.14 -0.1 970,945 - ABZR87_RS04645 0.14 -0.8 970,945 - ABZR87_RS04645 0.14 +1.5 971,304 + ABZR87_RS04645 0.42 +0.9 971,304 + ABZR87_RS04645 0.42 -1.3 971,304 + ABZR87_RS04645 0.42 -0.7 971,304 + ABZR87_RS04645 0.42 +0.1 971,305 - ABZR87_RS04645 0.42 -1.5 971,305 - ABZR87_RS04645 0.42 +1.4 971,305 - ABZR87_RS04645 0.42 -1.4 971,306 - ABZR87_RS04645 0.42 -2.5 971,778 + ABZR87_RS04645 0.78 -0.0 971,778 + ABZR87_RS04645 0.78 -0.9 971,778 + ABZR87_RS04645 0.78 -1.4 971,778 + ABZR87_RS04645 0.78 -0.9 971,778 + ABZR87_RS04645 0.78 -0.1 971,779 - ABZR87_RS04645 0.78 -0.8 971,779 - ABZR87_RS04645 0.78 +0.2 971,779 - ABZR87_RS04645 0.78 +0.3 971,779 - ABZR87_RS04645 0.78 +0.1 971,827 - ABZR87_RS04645 0.81 +0.1 971,827 - ABZR87_RS04645 0.81 -0.8 971,866 + ABZR87_RS04645 0.84 +0.2 971,866 + ABZR87_RS04645 0.84 -0.0 971,868 + ABZR87_RS04645 0.84 +0.5 971,868 + ABZR87_RS04645 0.84 -0.3 971,868 + ABZR87_RS04645 0.84 +0.4 971,868 + ABZR87_RS04645 0.84 +0.6 971,868 + ABZR87_RS04645 0.84 -0.6 971,868 + ABZR87_RS04645 0.84 +1.2 971,868 + ABZR87_RS04645 0.84 -0.7 971,868 + ABZR87_RS04645 0.84 -0.1 971,868 + ABZR87_RS04645 0.84 +0.5 971,868 + ABZR87_RS04645 0.84 +0.1 971,868 + ABZR87_RS04645 0.84 -0.3 971,868 + ABZR87_RS04645 0.84 -0.4 971,869 - ABZR87_RS04645 0.84 +0.2 971,869 - ABZR87_RS04645 0.84 +0.4 971,869 - ABZR87_RS04645 0.84 -1.8 971,869 - ABZR87_RS04645 0.84 -0.1 971,869 - ABZR87_RS04645 0.84 -0.3 971,869 - ABZR87_RS04645 0.84 -0.2 971,869 - ABZR87_RS04645 0.84 -0.7 971,869 - ABZR87_RS04645 0.84 -0.2 971,869 - ABZR87_RS04645 0.84 -0.3 971,869 - ABZR87_RS04645 0.84 -0.7 971,869 - ABZR87_RS04645 0.84 -1.4 971,869 - ABZR87_RS04645 0.84 -0.9 971,869 - ABZR87_RS04645 0.84 -0.7 971,869 - ABZR87_RS04645 0.84 -0.5 971,910 + ABZR87_RS04645 0.88 +1.2 971,910 + ABZR87_RS04645 0.88 -0.2 971,911 - ABZR87_RS04645 0.88 +1.7 971,911 - ABZR87_RS04645 0.88 -2.0 971,911 - ABZR87_RS04645 0.88 -0.1 971,956 + +0.3 971,956 + +0.3 971,956 + +0.2 971,956 + +0.7 971,956 + +0.7 971,956 + +0.1 971,956 + -0.5 971,957 - +0.3 971,957 - +0.2 971,957 - -0.0 971,957 - -0.6 971,957 - -0.1 971,957 - +0.5 971,957 - +0.5 971,957 - +1.5 972,065 + +0.1 972,065 + -0.1 972,065 + +0.4 972,065 + +0.0 972,065 + -0.5 972,065 + -0.4 972,065 + +0.0 972,066 - -0.2 972,066 - +0.9 972,066 - +0.3 972,066 - -0.7 972,066 - -0.2 972,066 - -0.9 972,066 - -0.7 972,066 - -0.1 972,066 - +0.1 972,066 - +0.2 972,161 - -0.4 972,194 + -0.8 972,195 - -1.5 972,195 - -0.9 972,195 - -0.4 972,243 + -1.5 972,410 - ABZR87_RS04650 0.19 +0.5 972,417 + ABZR87_RS04650 0.20 -0.2 972,418 - ABZR87_RS04650 0.20 +1.0 972,453 + ABZR87_RS04650 0.24 -0.3 972,453 + ABZR87_RS04650 0.24 +0.4 972,453 + ABZR87_RS04650 0.24 -0.0 972,453 + ABZR87_RS04650 0.24 -0.6 972,453 + ABZR87_RS04650 0.24 -0.3 972,454 - ABZR87_RS04650 0.24 -1.0 972,484 - ABZR87_RS04650 0.27 -2.0 972,578 - ABZR87_RS04650 0.38 +0.8 972,840 - ABZR87_RS04650 0.68 -0.0 972,840 - ABZR87_RS04650 0.68 +0.3
Or see this region's nucleotide sequence