Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04625 and ABZR87_RS04630 are separated by 78 nucleotides ABZR87_RS04630 and ABZR87_RS04635 are separated by 86 nucleotides ABZR87_RS04635 and ABZR87_RS04640 are separated by 48 nucleotides
ABZR87_RS04625: ABZR87_RS04625 - NnrS family protein, at 966,995 to 968,209
_RS04625
ABZR87_RS04630: ABZR87_RS04630 - PLP-dependent aminotransferase family protein, at 968,288 to 969,745
_RS04630
ABZR87_RS04635: ABZR87_RS04635 - carboxymuconolactone decarboxylase family protein, at 969,832 to 970,269
_RS04635
ABZR87_RS04640: ABZR87_RS04640 - hypothetical protein, at 970,318 to 970,749
_RS04640
Position (kb) 968
969
970 Strain fitness (log2 ratio) -2
-1
0
1
2 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.459 kb on + strand, within ABZR87_RS04625 at 967.460 kb on - strand, within ABZR87_RS04625 at 967.460 kb on - strand, within ABZR87_RS04625 at 967.463 kb on + strand, within ABZR87_RS04625 at 967.463 kb on + strand, within ABZR87_RS04625 at 967.627 kb on + strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.628 kb on - strand, within ABZR87_RS04625 at 967.755 kb on + strand, within ABZR87_RS04625 at 967.755 kb on + strand, within ABZR87_RS04625 at 967.756 kb on - strand, within ABZR87_RS04625 at 967.756 kb on - strand, within ABZR87_RS04625 at 967.756 kb on - strand, within ABZR87_RS04625 at 967.805 kb on - strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.853 kb on + strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 967.854 kb on - strand, within ABZR87_RS04625 at 968.039 kb on + strand, within ABZR87_RS04625 at 968.040 kb on - strand, within ABZR87_RS04625 at 968.150 kb on + strand at 968.150 kb on + strand at 968.151 kb on - strand at 968.252 kb on + strand at 968.252 kb on + strand at 968.340 kb on - strand at 968.454 kb on + strand, within ABZR87_RS04630 at 968.455 kb on - strand, within ABZR87_RS04630 at 968.455 kb on - strand, within ABZR87_RS04630 at 968.460 kb on - strand, within ABZR87_RS04630 at 968.480 kb on + strand, within ABZR87_RS04630 at 968.481 kb on - strand, within ABZR87_RS04630 at 968.481 kb on - strand, within ABZR87_RS04630 at 968.481 kb on - strand, within ABZR87_RS04630 at 968.768 kb on + strand, within ABZR87_RS04630 at 968.769 kb on - strand, within ABZR87_RS04630 at 968.816 kb on + strand, within ABZR87_RS04630 at 968.951 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.062 kb on + strand, within ABZR87_RS04630 at 969.063 kb on - strand, within ABZR87_RS04630 at 969.063 kb on - strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.173 kb on + strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.174 kb on - strand, within ABZR87_RS04630 at 969.248 kb on + strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.249 kb on - strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.296 kb on + strand, within ABZR87_RS04630 at 969.297 kb on - strand, within ABZR87_RS04630 at 969.297 kb on - strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.422 kb on + strand, within ABZR87_RS04630 at 969.423 kb on - strand, within ABZR87_RS04630 at 969.423 kb on - strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.426 kb on + strand, within ABZR87_RS04630 at 969.427 kb on - strand, within ABZR87_RS04630 at 969.446 kb on + strand, within ABZR87_RS04630 at 969.446 kb on + strand, within ABZR87_RS04630 at 969.447 kb on - strand, within ABZR87_RS04630 at 969.447 kb on - strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.535 kb on + strand, within ABZR87_RS04630 at 969.536 kb on - strand, within ABZR87_RS04630 at 969.536 kb on - strand, within ABZR87_RS04630 at 969.536 kb on - strand, within ABZR87_RS04630 at 969.611 kb on + strand at 969.612 kb on - strand at 969.612 kb on - strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.629 kb on + strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.630 kb on - strand at 969.746 kb on + strand at 969.746 kb on + strand at 969.747 kb on - strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.788 kb on + strand at 969.789 kb on - strand at 969.809 kb on + strand at 969.810 kb on - strand at 969.810 kb on - strand at 969.810 kb on - strand at 969.819 kb on - strand at 969.819 kb on - strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.853 kb on + strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.854 kb on - strand at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.979 kb on + strand, within ABZR87_RS04635 at 969.980 kb on - strand, within ABZR87_RS04635 at 969.980 kb on - strand, within ABZR87_RS04635 at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.278 kb on + strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.279 kb on - strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.280 kb on + strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.281 kb on - strand at 970.594 kb on + strand, within ABZR87_RS04640 at 970.594 kb on + strand, within ABZR87_RS04640 at 970.594 kb on + strand, within ABZR87_RS04640 at 970.595 kb on - strand, within ABZR87_RS04640 at 970.715 kb on + strand at 970.716 kb on - strand at 970.716 kb on - strand at 970.716 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 967,459 + ABZR87_RS04625 0.38 +1.1 967,459 + ABZR87_RS04625 0.38 +1.9 967,459 + ABZR87_RS04625 0.38 -0.4 967,459 + ABZR87_RS04625 0.38 -0.3 967,460 - ABZR87_RS04625 0.38 -0.9 967,460 - ABZR87_RS04625 0.38 +0.9 967,463 + ABZR87_RS04625 0.39 -0.1 967,463 + ABZR87_RS04625 0.39 +0.2 967,627 + ABZR87_RS04625 0.52 +1.0 967,628 - ABZR87_RS04625 0.52 +0.1 967,628 - ABZR87_RS04625 0.52 +0.6 967,628 - ABZR87_RS04625 0.52 -0.8 967,628 - ABZR87_RS04625 0.52 -0.3 967,628 - ABZR87_RS04625 0.52 -0.1 967,755 + ABZR87_RS04625 0.63 +0.5 967,755 + ABZR87_RS04625 0.63 +0.5 967,756 - ABZR87_RS04625 0.63 +0.9 967,756 - ABZR87_RS04625 0.63 +0.4 967,756 - ABZR87_RS04625 0.63 +0.0 967,805 - ABZR87_RS04625 0.67 +0.6 967,853 + ABZR87_RS04625 0.71 +0.8 967,853 + ABZR87_RS04625 0.71 +0.7 967,853 + ABZR87_RS04625 0.71 -0.1 967,853 + ABZR87_RS04625 0.71 -0.5 967,854 - ABZR87_RS04625 0.71 +1.2 967,854 - ABZR87_RS04625 0.71 -0.5 967,854 - ABZR87_RS04625 0.71 -0.3 967,854 - ABZR87_RS04625 0.71 +0.4 967,854 - ABZR87_RS04625 0.71 -0.3 968,039 + ABZR87_RS04625 0.86 -1.7 968,040 - ABZR87_RS04625 0.86 +0.0 968,150 + +0.3 968,150 + +1.6 968,151 - -1.7 968,252 + -1.4 968,252 + +0.1 968,340 - +0.2 968,454 + ABZR87_RS04630 0.11 +0.6 968,455 - ABZR87_RS04630 0.11 -0.7 968,455 - ABZR87_RS04630 0.11 -0.5 968,460 - ABZR87_RS04630 0.12 +0.9 968,480 + ABZR87_RS04630 0.13 -0.6 968,481 - ABZR87_RS04630 0.13 -0.5 968,481 - ABZR87_RS04630 0.13 -0.1 968,481 - ABZR87_RS04630 0.13 -1.9 968,768 + ABZR87_RS04630 0.33 +0.3 968,769 - ABZR87_RS04630 0.33 -1.1 968,816 + ABZR87_RS04630 0.36 +0.0 968,951 + ABZR87_RS04630 0.45 +1.2 969,062 + ABZR87_RS04630 0.53 -0.3 969,062 + ABZR87_RS04630 0.53 +1.1 969,062 + ABZR87_RS04630 0.53 -0.0 969,062 + ABZR87_RS04630 0.53 -1.4 969,063 - ABZR87_RS04630 0.53 +0.2 969,063 - ABZR87_RS04630 0.53 -0.7 969,173 + ABZR87_RS04630 0.61 +0.8 969,173 + ABZR87_RS04630 0.61 -1.0 969,173 + ABZR87_RS04630 0.61 +0.1 969,174 - ABZR87_RS04630 0.61 +0.7 969,174 - ABZR87_RS04630 0.61 -0.7 969,174 - ABZR87_RS04630 0.61 +0.3 969,248 + ABZR87_RS04630 0.66 -0.9 969,249 - ABZR87_RS04630 0.66 -0.3 969,249 - ABZR87_RS04630 0.66 +0.3 969,249 - ABZR87_RS04630 0.66 -0.4 969,249 - ABZR87_RS04630 0.66 -0.3 969,249 - ABZR87_RS04630 0.66 +0.4 969,249 - ABZR87_RS04630 0.66 -0.1 969,249 - ABZR87_RS04630 0.66 -0.5 969,249 - ABZR87_RS04630 0.66 +0.6 969,296 + ABZR87_RS04630 0.69 +0.2 969,296 + ABZR87_RS04630 0.69 -0.4 969,296 + ABZR87_RS04630 0.69 -2.0 969,296 + ABZR87_RS04630 0.69 +0.6 969,297 - ABZR87_RS04630 0.69 -0.0 969,297 - ABZR87_RS04630 0.69 -0.2 969,422 + ABZR87_RS04630 0.78 -0.6 969,422 + ABZR87_RS04630 0.78 +0.7 969,422 + ABZR87_RS04630 0.78 +0.7 969,422 + ABZR87_RS04630 0.78 +0.9 969,422 + ABZR87_RS04630 0.78 +0.9 969,423 - ABZR87_RS04630 0.78 -0.1 969,423 - ABZR87_RS04630 0.78 +2.0 969,426 + ABZR87_RS04630 0.78 +1.4 969,426 + ABZR87_RS04630 0.78 +0.7 969,426 + ABZR87_RS04630 0.78 -1.4 969,426 + ABZR87_RS04630 0.78 -0.0 969,426 + ABZR87_RS04630 0.78 +1.3 969,427 - ABZR87_RS04630 0.78 +2.0 969,446 + ABZR87_RS04630 0.79 +0.3 969,446 + ABZR87_RS04630 0.79 +0.4 969,447 - ABZR87_RS04630 0.79 -0.3 969,447 - ABZR87_RS04630 0.79 -1.3 969,535 + ABZR87_RS04630 0.86 -1.5 969,535 + ABZR87_RS04630 0.86 -1.8 969,535 + ABZR87_RS04630 0.86 -0.1 969,535 + ABZR87_RS04630 0.86 +1.3 969,536 - ABZR87_RS04630 0.86 -0.5 969,536 - ABZR87_RS04630 0.86 -0.5 969,536 - ABZR87_RS04630 0.86 -0.7 969,611 + -0.7 969,612 - +0.7 969,612 - +1.4 969,629 + +0.9 969,629 + +0.8 969,629 + -0.2 969,629 + +0.1 969,629 + +1.2 969,629 + +1.0 969,629 + -0.2 969,629 + -0.8 969,629 + +0.3 969,629 + -0.5 969,629 + -0.2 969,629 + +0.2 969,629 + +0.6 969,630 - -0.3 969,630 - -1.8 969,630 - -0.2 969,630 - -2.3 969,630 - +0.1 969,630 - -0.7 969,630 - -0.3 969,630 - -0.5 969,746 + +0.1 969,746 + +1.9 969,747 - -1.6 969,788 + +0.3 969,788 + -0.2 969,788 + +0.9 969,788 + -0.1 969,788 + -1.2 969,788 + -0.4 969,788 + -0.8 969,788 + -0.0 969,789 - +0.3 969,809 + -0.8 969,810 - -1.7 969,810 - +0.1 969,810 - -0.5 969,819 - -0.7 969,819 - +0.2 969,853 + +0.2 969,853 + -0.0 969,853 + -0.3 969,853 + +0.7 969,854 - +1.2 969,854 - +1.4 969,854 - +0.0 969,854 - -0.0 969,979 + ABZR87_RS04635 0.34 +0.7 969,979 + ABZR87_RS04635 0.34 +1.3 969,979 + ABZR87_RS04635 0.34 -0.2 969,979 + ABZR87_RS04635 0.34 +0.1 969,979 + ABZR87_RS04635 0.34 -0.2 969,980 - ABZR87_RS04635 0.34 -1.5 969,980 - ABZR87_RS04635 0.34 +0.1 970,278 + +0.5 970,278 + -0.3 970,278 + +0.4 970,278 + -1.0 970,278 + -1.9 970,278 + -0.8 970,278 + -0.0 970,278 + +0.3 970,278 + -0.9 970,278 + +2.1 970,279 - -2.1 970,279 - -0.3 970,279 - +0.3 970,280 + -2.1 970,280 + -1.4 970,280 + -1.0 970,280 + +1.8 970,280 + +2.2 970,280 + +1.3 970,280 + +1.3 970,280 + -0.3 970,280 + -1.1 970,281 - -0.5 970,281 - +0.0 970,281 - -0.1 970,281 - -0.5 970,281 - +0.3 970,281 - +0.8 970,281 - +0.0 970,594 + ABZR87_RS04640 0.64 -0.5 970,594 + ABZR87_RS04640 0.64 +0.0 970,594 + ABZR87_RS04640 0.64 +0.1 970,595 - ABZR87_RS04640 0.64 +1.4 970,715 + +0.1 970,716 - -1.8 970,716 - -0.2 970,716 - -0.4
Or see this region's nucleotide sequence