Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03925 and ABZR87_RS03930 are separated by 47 nucleotides ABZR87_RS03930 and ABZR87_RS03935 are separated by 84 nucleotides
ABZR87_RS03925: ABZR87_RS03925 - glycine cleavage system aminomethyltransferase GcvT, at 814,788 to 815,915
_RS03925
ABZR87_RS03930: ABZR87_RS03930 - glycine cleavage system protein GcvH, at 815,963 to 816,343
_RS03930
ABZR87_RS03935: ABZR87_RS03935 - aminomethyl-transferring glycine dehydrogenase, at 816,428 to 819,367
_RS03935
Position (kb) 815
816
817 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 815.043 kb on + strand, within ABZR87_RS03925 at 815.043 kb on + strand, within ABZR87_RS03925 at 815.043 kb on + strand, within ABZR87_RS03925 at 815.043 kb on + strand, within ABZR87_RS03925 at 815.043 kb on + strand, within ABZR87_RS03925 at 815.044 kb on - strand, within ABZR87_RS03925 at 815.044 kb on - strand, within ABZR87_RS03925 at 815.094 kb on + strand, within ABZR87_RS03925 at 815.094 kb on + strand, within ABZR87_RS03925 at 815.094 kb on + strand, within ABZR87_RS03925 at 815.095 kb on - strand, within ABZR87_RS03925 at 815.290 kb on - strand, within ABZR87_RS03925 at 815.290 kb on - strand, within ABZR87_RS03925 at 815.290 kb on - strand, within ABZR87_RS03925 at 815.290 kb on - strand, within ABZR87_RS03925 at 815.397 kb on + strand, within ABZR87_RS03925 at 815.398 kb on - strand, within ABZR87_RS03925 at 815.830 kb on + strand at 815.830 kb on + strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.831 kb on - strand at 815.873 kb on + strand at 815.874 kb on - strand at 815.874 kb on - strand at 815.938 kb on + strand at 815.938 kb on + strand at 815.938 kb on + strand at 815.938 kb on + strand at 815.939 kb on - strand at 815.939 kb on - strand at 815.990 kb on + strand at 815.990 kb on + strand at 815.991 kb on - strand at 815.991 kb on - strand at 815.991 kb on - strand at 815.991 kb on - strand at 816.251 kb on + strand, within ABZR87_RS03930 at 816.251 kb on + strand, within ABZR87_RS03930 at 816.252 kb on - strand, within ABZR87_RS03930 at 816.323 kb on + strand at 816.324 kb on - strand at 816.324 kb on - strand at 816.569 kb on + strand at 816.569 kb on + strand at 816.569 kb on + strand at 816.570 kb on - strand at 816.740 kb on + strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.741 kb on - strand, within ABZR87_RS03935 at 816.743 kb on + strand, within ABZR87_RS03935 at 816.743 kb on + strand, within ABZR87_RS03935 at 816.744 kb on - strand, within ABZR87_RS03935 at 816.744 kb on - strand, within ABZR87_RS03935 at 816.800 kb on + strand, within ABZR87_RS03935 at 816.809 kb on + strand, within ABZR87_RS03935 at 816.809 kb on + strand, within ABZR87_RS03935 at 816.809 kb on + strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 816.810 kb on - strand, within ABZR87_RS03935 at 817.124 kb on + strand, within ABZR87_RS03935 at 817.125 kb on - strand, within ABZR87_RS03935 at 817.166 kb on + strand, within ABZR87_RS03935 at 817.166 kb on + strand, within ABZR87_RS03935 at 817.167 kb on - strand, within ABZR87_RS03935 at 817.337 kb on + strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935 at 817.338 kb on - strand, within ABZR87_RS03935
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 815,043 + ABZR87_RS03925 0.23 -0.6 815,043 + ABZR87_RS03925 0.23 +0.1 815,043 + ABZR87_RS03925 0.23 -1.9 815,043 + ABZR87_RS03925 0.23 -0.8 815,043 + ABZR87_RS03925 0.23 -0.9 815,044 - ABZR87_RS03925 0.23 -1.6 815,044 - ABZR87_RS03925 0.23 -2.0 815,094 + ABZR87_RS03925 0.27 -2.0 815,094 + ABZR87_RS03925 0.27 +2.4 815,094 + ABZR87_RS03925 0.27 -1.3 815,095 - ABZR87_RS03925 0.27 -1.0 815,290 - ABZR87_RS03925 0.45 -0.7 815,290 - ABZR87_RS03925 0.45 -0.8 815,290 - ABZR87_RS03925 0.45 -0.5 815,290 - ABZR87_RS03925 0.45 -1.7 815,397 + ABZR87_RS03925 0.54 -1.8 815,398 - ABZR87_RS03925 0.54 -1.1 815,830 + -0.5 815,830 + +0.9 815,831 - -1.1 815,831 - -1.0 815,831 - -0.9 815,831 - -0.3 815,831 - -2.3 815,831 - -1.2 815,831 - -0.5 815,873 + +0.4 815,874 - -1.6 815,874 - -0.9 815,938 + +0.2 815,938 + +0.0 815,938 + -2.6 815,938 + +0.3 815,939 - -0.3 815,939 - -0.9 815,990 + -0.7 815,990 + -0.6 815,991 - -1.8 815,991 - +0.6 815,991 - -2.4 815,991 - -2.3 816,251 + ABZR87_RS03930 0.76 -1.3 816,251 + ABZR87_RS03930 0.76 -1.1 816,252 - ABZR87_RS03930 0.76 -1.9 816,323 + +0.2 816,324 - -3.4 816,324 - -2.4 816,569 + +0.4 816,569 + +1.3 816,569 + +2.4 816,570 - -1.1 816,740 + ABZR87_RS03935 0.11 -0.6 816,741 - ABZR87_RS03935 0.11 -0.8 816,741 - ABZR87_RS03935 0.11 +2.7 816,741 - ABZR87_RS03935 0.11 -1.3 816,741 - ABZR87_RS03935 0.11 -0.1 816,741 - ABZR87_RS03935 0.11 -2.4 816,743 + ABZR87_RS03935 0.11 -0.6 816,743 + ABZR87_RS03935 0.11 -1.9 816,744 - ABZR87_RS03935 0.11 -1.4 816,744 - ABZR87_RS03935 0.11 -3.0 816,800 + ABZR87_RS03935 0.13 -1.2 816,809 + ABZR87_RS03935 0.13 +1.1 816,809 + ABZR87_RS03935 0.13 -0.3 816,809 + ABZR87_RS03935 0.13 -0.3 816,810 - ABZR87_RS03935 0.13 -1.6 816,810 - ABZR87_RS03935 0.13 +0.2 816,810 - ABZR87_RS03935 0.13 -0.6 816,810 - ABZR87_RS03935 0.13 -0.9 817,124 + ABZR87_RS03935 0.24 +0.2 817,125 - ABZR87_RS03935 0.24 -0.1 817,166 + ABZR87_RS03935 0.25 -0.2 817,166 + ABZR87_RS03935 0.25 +0.0 817,167 - ABZR87_RS03935 0.25 -3.0 817,337 + ABZR87_RS03935 0.31 -0.8 817,338 - ABZR87_RS03935 0.31 -0.6 817,338 - ABZR87_RS03935 0.31 -1.9 817,338 - ABZR87_RS03935 0.31 -1.0 817,338 - ABZR87_RS03935 0.31 -0.7
Or see this region's nucleotide sequence