Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03625

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03615 and ABZR87_RS03620 are separated by 33 nucleotidesABZR87_RS03620 and ABZR87_RS03625 are separated by 105 nucleotidesABZR87_RS03625 and ABZR87_RS03630 are separated by 109 nucleotidesABZR87_RS03630 and ABZR87_RS03635 are separated by 35 nucleotides ABZR87_RS03615: ABZR87_RS03615 - Hsp20/alpha crystallin family protein, at 758,950 to 759,393 _RS03615 ABZR87_RS03620: ABZR87_RS03620 - Hsp20/alpha crystallin family protein, at 759,427 to 759,846 _RS03620 ABZR87_RS03625: ABZR87_RS03625 - hypothetical protein, at 759,952 to 760,197 _RS03625 ABZR87_RS03630: ABZR87_RS03630 - DUF892 family protein, at 760,307 to 760,819 _RS03630 ABZR87_RS03635: ABZR87_RS03635 - ferritin-like domain-containing protein, at 760,855 to 761,352 _RS03635 Position (kb) 759 760 761Strain fitness (log2 ratio) -2 -1 0 1 2at 759.232 kb on + strand, within ABZR87_RS03615at 759.233 kb on - strand, within ABZR87_RS03615at 759.233 kb on - strand, within ABZR87_RS03615at 759.233 kb on - strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615at 759.924 kb on + strandat 759.937 kb on + strandat 759.938 kb on - strandat 759.938 kb on - strandat 759.938 kb on - strandat 759.938 kb on - strandat 759.938 kb on - strandat 759.940 kb on + strandat 759.940 kb on + strandat 759.940 kb on + strandat 759.940 kb on + strandat 759.940 kb on + strandat 759.940 kb on + strandat 759.940 kb on + strandat 759.941 kb on - strandat 759.941 kb on - strandat 759.941 kb on - strandat 759.941 kb on - strandat 760.105 kb on - strand, within ABZR87_RS03625at 760.110 kb on + strand, within ABZR87_RS03625at 760.195 kb on + strandat 760.292 kb on + strandat 760.292 kb on + strandat 760.292 kb on + strandat 760.292 kb on + strandat 760.312 kb on + strandat 760.312 kb on + strandat 760.312 kb on + strandat 760.312 kb on + strandat 760.312 kb on + strandat 760.312 kb on + strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.313 kb on - strandat 760.415 kb on + strand, within ABZR87_RS03630at 760.415 kb on + strand, within ABZR87_RS03630at 760.416 kb on - strand, within ABZR87_RS03630at 760.416 kb on - strand, within ABZR87_RS03630at 760.416 kb on - strand, within ABZR87_RS03630at 760.416 kb on - strand, within ABZR87_RS03630at 760.416 kb on - strand, within ABZR87_RS03630at 760.447 kb on + strand, within ABZR87_RS03630at 760.448 kb on - strand, within ABZR87_RS03630at 760.448 kb on - strand, within ABZR87_RS03630at 760.448 kb on - strand, within ABZR87_RS03630at 760.510 kb on + strand, within ABZR87_RS03630at 760.510 kb on + strand, within ABZR87_RS03630at 760.510 kb on + strand, within ABZR87_RS03630at 760.510 kb on + strand, within ABZR87_RS03630at 760.510 kb on + strand, within ABZR87_RS03630at 760.511 kb on - strand, within ABZR87_RS03630at 760.613 kb on + strand, within ABZR87_RS03630at 760.613 kb on + strand, within ABZR87_RS03630at 760.614 kb on - strand, within ABZR87_RS03630at 760.643 kb on + strand, within ABZR87_RS03630at 760.643 kb on + strand, within ABZR87_RS03630at 760.643 kb on + strand, within ABZR87_RS03630at 760.643 kb on + strand, within ABZR87_RS03630at 760.644 kb on - strand, within ABZR87_RS03630at 760.699 kb on - strand, within ABZR87_RS03630at 760.850 kb on + strandat 760.850 kb on + strandat 760.851 kb on - strandat 760.906 kb on + strand, within ABZR87_RS03635at 760.906 kb on + strand, within ABZR87_RS03635at 760.907 kb on - strand, within ABZR87_RS03635at 760.907 kb on - strand, within ABZR87_RS03635at 760.907 kb on - strand, within ABZR87_RS03635at 761.126 kb on + strand, within ABZR87_RS03635at 761.127 kb on - strand, within ABZR87_RS03635at 761.185 kb on + strand, within ABZR87_RS03635at 761.185 kb on + strand, within ABZR87_RS03635at 761.186 kb on - strand, within ABZR87_RS03635at 761.186 kb on - strand, within ABZR87_RS03635at 761.186 kb on - strand, within ABZR87_RS03635at 761.186 kb on - strand, within ABZR87_RS03635

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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759,232 + ABZR87_RS03615 0.64 -1.3
759,233 - ABZR87_RS03615 0.64 -1.1
759,233 - ABZR87_RS03615 0.64 -0.1
759,233 - ABZR87_RS03615 0.64 +0.0
759,316 + ABZR87_RS03615 0.82 -0.1
759,316 + ABZR87_RS03615 0.82 +0.8
759,316 + ABZR87_RS03615 0.82 +0.2
759,316 + ABZR87_RS03615 0.82 +1.9
759,316 + ABZR87_RS03615 0.82 +0.3
759,317 - ABZR87_RS03615 0.83 -1.8
759,317 - ABZR87_RS03615 0.83 -0.3
759,317 - ABZR87_RS03615 0.83 +0.9
759,317 - ABZR87_RS03615 0.83 -0.7
759,924 + +0.3
759,937 + -0.5
759,938 - -0.5
759,938 - +0.4
759,938 - +0.0
759,938 - +0.6
759,938 - -0.4
759,940 + +2.4
759,940 + -0.6
759,940 + -2.1
759,940 + -2.1
759,940 + +0.2
759,940 + -1.9
759,940 + +0.4
759,941 - +0.3
759,941 - -0.7
759,941 - +1.2
759,941 - -1.0
760,105 - ABZR87_RS03625 0.62 -0.8
760,110 + ABZR87_RS03625 0.64 -0.6
760,195 + -0.1
760,292 + -0.8
760,292 + +0.0
760,292 + +0.5
760,292 + +0.4
760,312 + +0.9
760,312 + -0.9
760,312 + +0.6
760,312 + +0.9
760,312 + +0.8
760,312 + -0.1
760,313 - +0.6
760,313 - -0.8
760,313 - +0.4
760,313 - -0.4
760,313 - -0.4
760,313 - +1.2
760,313 - +0.3
760,313 - +0.4
760,313 - +0.0
760,415 + ABZR87_RS03630 0.21 -1.1
760,415 + ABZR87_RS03630 0.21 +0.1
760,416 - ABZR87_RS03630 0.21 -0.4
760,416 - ABZR87_RS03630 0.21 +0.8
760,416 - ABZR87_RS03630 0.21 +0.5
760,416 - ABZR87_RS03630 0.21 +0.6
760,416 - ABZR87_RS03630 0.21 +0.2
760,447 + ABZR87_RS03630 0.27 +0.4
760,448 - ABZR87_RS03630 0.27 +0.9
760,448 - ABZR87_RS03630 0.27 +0.6
760,448 - ABZR87_RS03630 0.27 -0.1
760,510 + ABZR87_RS03630 0.40 -2.0
760,510 + ABZR87_RS03630 0.40 -0.2
760,510 + ABZR87_RS03630 0.40 +0.5
760,510 + ABZR87_RS03630 0.40 -0.6
760,510 + ABZR87_RS03630 0.40 +0.8
760,511 - ABZR87_RS03630 0.40 +0.5
760,613 + ABZR87_RS03630 0.60 +1.3
760,613 + ABZR87_RS03630 0.60 +0.1
760,614 - ABZR87_RS03630 0.60 -0.5
760,643 + ABZR87_RS03630 0.65 +0.9
760,643 + ABZR87_RS03630 0.65 -0.7
760,643 + ABZR87_RS03630 0.65 +0.5
760,643 + ABZR87_RS03630 0.65 +0.2
760,644 - ABZR87_RS03630 0.66 -0.0
760,699 - ABZR87_RS03630 0.76 +0.0
760,850 + -0.3
760,850 + +1.6
760,851 - -0.6
760,906 + ABZR87_RS03635 0.10 -0.8
760,906 + ABZR87_RS03635 0.10 -1.3
760,907 - ABZR87_RS03635 0.10 +0.2
760,907 - ABZR87_RS03635 0.10 +1.4
760,907 - ABZR87_RS03635 0.10 +0.2
761,126 + ABZR87_RS03635 0.54 +0.3
761,127 - ABZR87_RS03635 0.55 +0.0
761,185 + ABZR87_RS03635 0.66 +0.6
761,185 + ABZR87_RS03635 0.66 +1.1
761,186 - ABZR87_RS03635 0.66 +0.5
761,186 - ABZR87_RS03635 0.66 -0.1
761,186 - ABZR87_RS03635 0.66 -0.5
761,186 - ABZR87_RS03635 0.66 +1.3

Or see this region's nucleotide sequence