Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03440 and ABZR87_RS03445 are separated by 17 nucleotides ABZR87_RS03445 and ABZR87_RS03450 are separated by 37 nucleotides ABZR87_RS03450 and ABZR87_RS03455 are separated by 16 nucleotides
ABZR87_RS03440: ABZR87_RS03440 - type II secretion system protein GspM, at 717,581 to 718,150
_RS03440
ABZR87_RS03445: ABZR87_RS03445 - type II secretion system protein N, at 718,168 to 719,010
_RS03445
ABZR87_RS03450: ABZR87_RS03450 - type II secretion system secretin GspD, at 719,048 to 721,465
_RS03450
ABZR87_RS03455: ABZR87_RS03455 - type II secretion system ATPase GspE, at 721,482 to 723,038
_RS03455
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.082 kb on + strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.083 kb on - strand, within ABZR87_RS03440 at 718.300 kb on + strand, within ABZR87_RS03445 at 718.301 kb on - strand, within ABZR87_RS03445 at 718.400 kb on + strand, within ABZR87_RS03445 at 718.401 kb on - strand, within ABZR87_RS03445 at 718.713 kb on + strand, within ABZR87_RS03445 at 718.714 kb on - strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.751 kb on + strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.752 kb on - strand, within ABZR87_RS03445 at 718.789 kb on + strand, within ABZR87_RS03445 at 718.789 kb on + strand, within ABZR87_RS03445 at 718.790 kb on - strand, within ABZR87_RS03445 at 718.790 kb on - strand, within ABZR87_RS03445 at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.063 kb on + strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.064 kb on - strand at 719.387 kb on + strand, within ABZR87_RS03450 at 719.621 kb on - strand, within ABZR87_RS03450 at 719.627 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.827 kb on + strand, within ABZR87_RS03450 at 719.828 kb on - strand, within ABZR87_RS03450 at 719.828 kb on - strand, within ABZR87_RS03450 at 719.857 kb on + strand, within ABZR87_RS03450 at 719.858 kb on - strand, within ABZR87_RS03450 at 720.146 kb on + strand, within ABZR87_RS03450 at 720.146 kb on + strand, within ABZR87_RS03450 at 720.147 kb on - strand, within ABZR87_RS03450 at 720.147 kb on - strand, within ABZR87_RS03450 at 720.147 kb on - strand, within ABZR87_RS03450 at 720.299 kb on + strand, within ABZR87_RS03450 at 720.299 kb on + strand, within ABZR87_RS03450 at 720.300 kb on - strand, within ABZR87_RS03450 at 720.300 kb on - strand, within ABZR87_RS03450 at 720.353 kb on + strand, within ABZR87_RS03450 at 720.353 kb on + strand, within ABZR87_RS03450 at 720.353 kb on + strand, within ABZR87_RS03450 at 720.353 kb on + strand, within ABZR87_RS03450 at 720.353 kb on + strand, within ABZR87_RS03450 at 720.354 kb on - strand, within ABZR87_RS03450 at 720.354 kb on - strand, within ABZR87_RS03450 at 720.354 kb on - strand, within ABZR87_RS03450 at 720.354 kb on - strand, within ABZR87_RS03450 at 720.354 kb on - strand, within ABZR87_RS03450 at 720.464 kb on + strand, within ABZR87_RS03450 at 720.464 kb on + strand, within ABZR87_RS03450 at 720.465 kb on - strand, within ABZR87_RS03450 at 720.465 kb on - strand, within ABZR87_RS03450 at 720.465 kb on - strand, within ABZR87_RS03450 at 720.465 kb on - strand, within ABZR87_RS03450 at 720.465 kb on - strand, within ABZR87_RS03450 at 720.465 kb on - strand, within ABZR87_RS03450 at 720.465 kb on - strand, within ABZR87_RS03450 at 720.756 kb on - strand, within ABZR87_RS03450 at 720.756 kb on - strand, within ABZR87_RS03450 at 721.016 kb on + strand, within ABZR87_RS03450 at 721.017 kb on - strand, within ABZR87_RS03450 at 721.017 kb on - strand, within ABZR87_RS03450 at 721.017 kb on - strand, within ABZR87_RS03450 at 721.144 kb on + strand, within ABZR87_RS03450 at 721.144 kb on + strand, within ABZR87_RS03450 at 721.181 kb on + strand, within ABZR87_RS03450 at 721.181 kb on + strand, within ABZR87_RS03450 at 721.182 kb on - strand, within ABZR87_RS03450 at 721.182 kb on - strand, within ABZR87_RS03450 at 721.182 kb on - strand, within ABZR87_RS03450 at 721.187 kb on + strand, within ABZR87_RS03450 at 721.187 kb on + strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.188 kb on - strand, within ABZR87_RS03450 at 721.298 kb on + strand at 721.298 kb on + strand at 721.298 kb on + strand at 721.298 kb on + strand at 721.298 kb on + strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.299 kb on - strand at 721.337 kb on - strand at 721.434 kb on - strand at 721.557 kb on + strand at 721.691 kb on - strand, within ABZR87_RS03455 at 721.734 kb on + strand, within ABZR87_RS03455 at 721.734 kb on + strand, within ABZR87_RS03455 at 721.734 kb on + strand, within ABZR87_RS03455 at 721.735 kb on - strand, within ABZR87_RS03455 at 721.735 kb on - strand, within ABZR87_RS03455 at 721.735 kb on - strand, within ABZR87_RS03455 at 721.886 kb on + strand, within ABZR87_RS03455 at 721.887 kb on - strand, within ABZR87_RS03455 at 721.887 kb on - strand, within ABZR87_RS03455 at 722.113 kb on + strand, within ABZR87_RS03455 at 722.113 kb on + strand, within ABZR87_RS03455 at 722.213 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.316 kb on + strand, within ABZR87_RS03455 at 722.317 kb on - strand, within ABZR87_RS03455 at 722.382 kb on + strand, within ABZR87_RS03455 at 722.382 kb on + strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455 at 722.383 kb on - strand, within ABZR87_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 718,082 + ABZR87_RS03440 0.88 -1.5 718,082 + ABZR87_RS03440 0.88 -2.3 718,082 + ABZR87_RS03440 0.88 -2.7 718,083 - ABZR87_RS03440 0.88 +0.1 718,083 - ABZR87_RS03440 0.88 -1.4 718,083 - ABZR87_RS03440 0.88 -2.8 718,083 - ABZR87_RS03440 0.88 -3.3 718,083 - ABZR87_RS03440 0.88 -2.8 718,083 - ABZR87_RS03440 0.88 -2.5 718,300 + ABZR87_RS03445 0.16 -1.3 718,301 - ABZR87_RS03445 0.16 -1.7 718,400 + ABZR87_RS03445 0.28 -3.1 718,401 - ABZR87_RS03445 0.28 -0.6 718,713 + ABZR87_RS03445 0.65 +0.8 718,714 - ABZR87_RS03445 0.65 -1.0 718,751 + ABZR87_RS03445 0.69 -0.4 718,751 + ABZR87_RS03445 0.69 -0.2 718,751 + ABZR87_RS03445 0.69 +0.2 718,751 + ABZR87_RS03445 0.69 +0.4 718,751 + ABZR87_RS03445 0.69 -2.4 718,751 + ABZR87_RS03445 0.69 -0.8 718,752 - ABZR87_RS03445 0.69 -3.3 718,752 - ABZR87_RS03445 0.69 -2.0 718,752 - ABZR87_RS03445 0.69 -2.2 718,789 + ABZR87_RS03445 0.74 -1.0 718,789 + ABZR87_RS03445 0.74 -3.1 718,790 - ABZR87_RS03445 0.74 -0.3 718,790 - ABZR87_RS03445 0.74 -0.3 719,063 + -2.4 719,063 + -1.5 719,063 + -2.0 719,063 + -1.6 719,063 + -0.2 719,063 + -1.6 719,063 + -3.9 719,063 + -1.3 719,064 - -0.1 719,064 - -0.9 719,064 - -1.1 719,064 - -2.4 719,064 - -2.7 719,064 - -0.3 719,064 - -1.1 719,064 - -1.5 719,064 - -0.2 719,387 + ABZR87_RS03450 0.14 -0.4 719,621 - ABZR87_RS03450 0.24 -1.6 719,627 + ABZR87_RS03450 0.24 -1.9 719,827 + ABZR87_RS03450 0.32 -2.2 719,827 + ABZR87_RS03450 0.32 +0.3 719,827 + ABZR87_RS03450 0.32 -1.5 719,827 + ABZR87_RS03450 0.32 -0.6 719,827 + ABZR87_RS03450 0.32 -2.8 719,827 + ABZR87_RS03450 0.32 -1.5 719,827 + ABZR87_RS03450 0.32 -2.4 719,828 - ABZR87_RS03450 0.32 -2.0 719,828 - ABZR87_RS03450 0.32 -3.0 719,857 + ABZR87_RS03450 0.33 -2.5 719,858 - ABZR87_RS03450 0.33 -1.4 720,146 + ABZR87_RS03450 0.45 -2.7 720,146 + ABZR87_RS03450 0.45 -2.9 720,147 - ABZR87_RS03450 0.45 -1.2 720,147 - ABZR87_RS03450 0.45 -2.2 720,147 - ABZR87_RS03450 0.45 -1.1 720,299 + ABZR87_RS03450 0.52 -2.7 720,299 + ABZR87_RS03450 0.52 -1.8 720,300 - ABZR87_RS03450 0.52 -3.2 720,300 - ABZR87_RS03450 0.52 +0.4 720,353 + ABZR87_RS03450 0.54 +1.5 720,353 + ABZR87_RS03450 0.54 -0.8 720,353 + ABZR87_RS03450 0.54 -1.3 720,353 + ABZR87_RS03450 0.54 -1.2 720,353 + ABZR87_RS03450 0.54 -1.1 720,354 - ABZR87_RS03450 0.54 -0.6 720,354 - ABZR87_RS03450 0.54 -1.0 720,354 - ABZR87_RS03450 0.54 -0.6 720,354 - ABZR87_RS03450 0.54 -0.8 720,354 - ABZR87_RS03450 0.54 -1.4 720,464 + ABZR87_RS03450 0.59 -1.9 720,464 + ABZR87_RS03450 0.59 -3.1 720,465 - ABZR87_RS03450 0.59 -1.8 720,465 - ABZR87_RS03450 0.59 -0.3 720,465 - ABZR87_RS03450 0.59 +0.2 720,465 - ABZR87_RS03450 0.59 -0.3 720,465 - ABZR87_RS03450 0.59 -1.9 720,465 - ABZR87_RS03450 0.59 -2.2 720,465 - ABZR87_RS03450 0.59 -2.5 720,756 - ABZR87_RS03450 0.71 -4.0 720,756 - ABZR87_RS03450 0.71 -1.8 721,016 + ABZR87_RS03450 0.81 -2.8 721,017 - ABZR87_RS03450 0.81 +0.3 721,017 - ABZR87_RS03450 0.81 -0.2 721,017 - ABZR87_RS03450 0.81 -3.6 721,144 + ABZR87_RS03450 0.87 -2.2 721,144 + ABZR87_RS03450 0.87 -0.6 721,181 + ABZR87_RS03450 0.88 -1.9 721,181 + ABZR87_RS03450 0.88 -1.4 721,182 - ABZR87_RS03450 0.88 -3.4 721,182 - ABZR87_RS03450 0.88 -3.0 721,182 - ABZR87_RS03450 0.88 -1.9 721,187 + ABZR87_RS03450 0.88 -1.8 721,187 + ABZR87_RS03450 0.88 -0.1 721,188 - ABZR87_RS03450 0.89 -2.2 721,188 - ABZR87_RS03450 0.89 -1.6 721,188 - ABZR87_RS03450 0.89 -1.2 721,188 - ABZR87_RS03450 0.89 -1.2 721,188 - ABZR87_RS03450 0.89 -3.3 721,188 - ABZR87_RS03450 0.89 -1.9 721,188 - ABZR87_RS03450 0.89 -1.4 721,188 - ABZR87_RS03450 0.89 -1.3 721,188 - ABZR87_RS03450 0.89 -0.6 721,298 + -2.6 721,298 + -0.5 721,298 + -1.0 721,298 + -1.6 721,298 + -2.2 721,299 - -3.0 721,299 - +0.9 721,299 - -0.3 721,299 - -1.6 721,299 - -0.3 721,299 - -1.4 721,337 - -1.7 721,434 - -0.7 721,557 + -1.4 721,691 - ABZR87_RS03455 0.13 -2.3 721,734 + ABZR87_RS03455 0.16 -0.3 721,734 + ABZR87_RS03455 0.16 -1.3 721,734 + ABZR87_RS03455 0.16 -3.5 721,735 - ABZR87_RS03455 0.16 -0.6 721,735 - ABZR87_RS03455 0.16 -1.1 721,735 - ABZR87_RS03455 0.16 -1.2 721,886 + ABZR87_RS03455 0.26 -0.9 721,887 - ABZR87_RS03455 0.26 -2.1 721,887 - ABZR87_RS03455 0.26 -2.7 722,113 + ABZR87_RS03455 0.41 -2.8 722,113 + ABZR87_RS03455 0.41 +0.3 722,213 + ABZR87_RS03455 0.47 +2.4 722,316 + ABZR87_RS03455 0.54 -1.1 722,316 + ABZR87_RS03455 0.54 -2.6 722,316 + ABZR87_RS03455 0.54 -1.5 722,317 - ABZR87_RS03455 0.54 -4.0 722,382 + ABZR87_RS03455 0.58 -0.9 722,382 + ABZR87_RS03455 0.58 -2.0 722,383 - ABZR87_RS03455 0.58 -0.9 722,383 - ABZR87_RS03455 0.58 -0.5 722,383 - ABZR87_RS03455 0.58 -2.9 722,383 - ABZR87_RS03455 0.58 -2.8 722,383 - ABZR87_RS03455 0.58 -3.6
Or see this region's nucleotide sequence