Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03450

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03440 and ABZR87_RS03445 are separated by 17 nucleotidesABZR87_RS03445 and ABZR87_RS03450 are separated by 37 nucleotidesABZR87_RS03450 and ABZR87_RS03455 are separated by 16 nucleotides ABZR87_RS03440: ABZR87_RS03440 - type II secretion system protein GspM, at 717,581 to 718,150 _RS03440 ABZR87_RS03445: ABZR87_RS03445 - type II secretion system protein N, at 718,168 to 719,010 _RS03445 ABZR87_RS03450: ABZR87_RS03450 - type II secretion system secretin GspD, at 719,048 to 721,465 _RS03450 ABZR87_RS03455: ABZR87_RS03455 - type II secretion system ATPase GspE, at 721,482 to 723,038 _RS03455 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 718.082 kb on + strand, within ABZR87_RS03440at 718.082 kb on + strand, within ABZR87_RS03440at 718.082 kb on + strand, within ABZR87_RS03440at 718.083 kb on - strand, within ABZR87_RS03440at 718.083 kb on - strand, within ABZR87_RS03440at 718.083 kb on - strand, within ABZR87_RS03440at 718.083 kb on - strand, within ABZR87_RS03440at 718.083 kb on - strand, within ABZR87_RS03440at 718.083 kb on - strand, within ABZR87_RS03440at 718.300 kb on + strand, within ABZR87_RS03445at 718.301 kb on - strand, within ABZR87_RS03445at 718.400 kb on + strand, within ABZR87_RS03445at 718.401 kb on - strand, within ABZR87_RS03445at 718.713 kb on + strand, within ABZR87_RS03445at 718.714 kb on - strand, within ABZR87_RS03445at 718.751 kb on + strand, within ABZR87_RS03445at 718.751 kb on + strand, within ABZR87_RS03445at 718.751 kb on + strand, within ABZR87_RS03445at 718.751 kb on + strand, within ABZR87_RS03445at 718.751 kb on + strand, within ABZR87_RS03445at 718.751 kb on + strand, within ABZR87_RS03445at 718.752 kb on - strand, within ABZR87_RS03445at 718.752 kb on - strand, within ABZR87_RS03445at 718.752 kb on - strand, within ABZR87_RS03445at 718.789 kb on + strand, within ABZR87_RS03445at 718.789 kb on + strand, within ABZR87_RS03445at 718.790 kb on - strand, within ABZR87_RS03445at 718.790 kb on - strand, within ABZR87_RS03445at 719.063 kb on + strandat 719.063 kb on + strandat 719.063 kb on + strandat 719.063 kb on + strandat 719.063 kb on + strandat 719.063 kb on + strandat 719.063 kb on + strandat 719.063 kb on + strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.064 kb on - strandat 719.387 kb on + strand, within ABZR87_RS03450at 719.621 kb on - strand, within ABZR87_RS03450at 719.627 kb on + strand, within ABZR87_RS03450at 719.827 kb on + strand, within ABZR87_RS03450at 719.827 kb on + strand, within ABZR87_RS03450at 719.827 kb on + strand, within ABZR87_RS03450at 719.827 kb on + strand, within ABZR87_RS03450at 719.827 kb on + strand, within ABZR87_RS03450at 719.827 kb on + strand, within ABZR87_RS03450at 719.827 kb on + strand, within ABZR87_RS03450at 719.828 kb on - strand, within ABZR87_RS03450at 719.828 kb on - strand, within ABZR87_RS03450at 719.857 kb on + strand, within ABZR87_RS03450at 719.858 kb on - strand, within ABZR87_RS03450at 720.146 kb on + strand, within ABZR87_RS03450at 720.146 kb on + strand, within ABZR87_RS03450at 720.147 kb on - strand, within ABZR87_RS03450at 720.147 kb on - strand, within ABZR87_RS03450at 720.147 kb on - strand, within ABZR87_RS03450at 720.299 kb on + strand, within ABZR87_RS03450at 720.299 kb on + strand, within ABZR87_RS03450at 720.300 kb on - strand, within ABZR87_RS03450at 720.300 kb on - strand, within ABZR87_RS03450at 720.353 kb on + strand, within ABZR87_RS03450at 720.353 kb on + strand, within ABZR87_RS03450at 720.353 kb on + strand, within ABZR87_RS03450at 720.353 kb on + strand, within ABZR87_RS03450at 720.353 kb on + strand, within ABZR87_RS03450at 720.354 kb on - strand, within ABZR87_RS03450at 720.354 kb on - strand, within ABZR87_RS03450at 720.354 kb on - strand, within ABZR87_RS03450at 720.354 kb on - strand, within ABZR87_RS03450at 720.354 kb on - strand, within ABZR87_RS03450at 720.464 kb on + strand, within ABZR87_RS03450at 720.464 kb on + strand, within ABZR87_RS03450at 720.465 kb on - strand, within ABZR87_RS03450at 720.465 kb on - strand, within ABZR87_RS03450at 720.465 kb on - strand, within ABZR87_RS03450at 720.465 kb on - strand, within ABZR87_RS03450at 720.465 kb on - strand, within ABZR87_RS03450at 720.465 kb on - strand, within ABZR87_RS03450at 720.465 kb on - strand, within ABZR87_RS03450at 720.756 kb on - strand, within ABZR87_RS03450at 720.756 kb on - strand, within ABZR87_RS03450at 721.016 kb on + strand, within ABZR87_RS03450at 721.017 kb on - strand, within ABZR87_RS03450at 721.017 kb on - strand, within ABZR87_RS03450at 721.017 kb on - strand, within ABZR87_RS03450at 721.144 kb on + strand, within ABZR87_RS03450at 721.144 kb on + strand, within ABZR87_RS03450at 721.181 kb on + strand, within ABZR87_RS03450at 721.181 kb on + strand, within ABZR87_RS03450at 721.182 kb on - strand, within ABZR87_RS03450at 721.182 kb on - strand, within ABZR87_RS03450at 721.182 kb on - strand, within ABZR87_RS03450at 721.187 kb on + strand, within ABZR87_RS03450at 721.187 kb on + strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.188 kb on - strand, within ABZR87_RS03450at 721.298 kb on + strandat 721.298 kb on + strandat 721.298 kb on + strandat 721.298 kb on + strandat 721.298 kb on + strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.299 kb on - strandat 721.337 kb on - strandat 721.434 kb on - strandat 721.557 kb on + strandat 721.691 kb on - strand, within ABZR87_RS03455at 721.734 kb on + strand, within ABZR87_RS03455at 721.734 kb on + strand, within ABZR87_RS03455at 721.734 kb on + strand, within ABZR87_RS03455at 721.735 kb on - strand, within ABZR87_RS03455at 721.735 kb on - strand, within ABZR87_RS03455at 721.735 kb on - strand, within ABZR87_RS03455at 721.886 kb on + strand, within ABZR87_RS03455at 721.887 kb on - strand, within ABZR87_RS03455at 721.887 kb on - strand, within ABZR87_RS03455at 722.113 kb on + strand, within ABZR87_RS03455at 722.113 kb on + strand, within ABZR87_RS03455at 722.213 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.316 kb on + strand, within ABZR87_RS03455at 722.317 kb on - strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.382 kb on + strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455at 722.383 kb on - strand, within ABZR87_RS03455

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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718,082 + ABZR87_RS03440 0.88 -1.5
718,082 + ABZR87_RS03440 0.88 -2.3
718,082 + ABZR87_RS03440 0.88 -2.7
718,083 - ABZR87_RS03440 0.88 +0.1
718,083 - ABZR87_RS03440 0.88 -1.4
718,083 - ABZR87_RS03440 0.88 -2.8
718,083 - ABZR87_RS03440 0.88 -3.3
718,083 - ABZR87_RS03440 0.88 -2.8
718,083 - ABZR87_RS03440 0.88 -2.5
718,300 + ABZR87_RS03445 0.16 -1.3
718,301 - ABZR87_RS03445 0.16 -1.7
718,400 + ABZR87_RS03445 0.28 -3.1
718,401 - ABZR87_RS03445 0.28 -0.6
718,713 + ABZR87_RS03445 0.65 +0.8
718,714 - ABZR87_RS03445 0.65 -1.0
718,751 + ABZR87_RS03445 0.69 -0.4
718,751 + ABZR87_RS03445 0.69 -0.2
718,751 + ABZR87_RS03445 0.69 +0.2
718,751 + ABZR87_RS03445 0.69 +0.4
718,751 + ABZR87_RS03445 0.69 -2.4
718,751 + ABZR87_RS03445 0.69 -0.8
718,752 - ABZR87_RS03445 0.69 -3.3
718,752 - ABZR87_RS03445 0.69 -2.0
718,752 - ABZR87_RS03445 0.69 -2.2
718,789 + ABZR87_RS03445 0.74 -1.0
718,789 + ABZR87_RS03445 0.74 -3.1
718,790 - ABZR87_RS03445 0.74 -0.3
718,790 - ABZR87_RS03445 0.74 -0.3
719,063 + -2.4
719,063 + -1.5
719,063 + -2.0
719,063 + -1.6
719,063 + -0.2
719,063 + -1.6
719,063 + -3.9
719,063 + -1.3
719,064 - -0.1
719,064 - -0.9
719,064 - -1.1
719,064 - -2.4
719,064 - -2.7
719,064 - -0.3
719,064 - -1.1
719,064 - -1.5
719,064 - -0.2
719,387 + ABZR87_RS03450 0.14 -0.4
719,621 - ABZR87_RS03450 0.24 -1.6
719,627 + ABZR87_RS03450 0.24 -1.9
719,827 + ABZR87_RS03450 0.32 -2.2
719,827 + ABZR87_RS03450 0.32 +0.3
719,827 + ABZR87_RS03450 0.32 -1.5
719,827 + ABZR87_RS03450 0.32 -0.6
719,827 + ABZR87_RS03450 0.32 -2.8
719,827 + ABZR87_RS03450 0.32 -1.5
719,827 + ABZR87_RS03450 0.32 -2.4
719,828 - ABZR87_RS03450 0.32 -2.0
719,828 - ABZR87_RS03450 0.32 -3.0
719,857 + ABZR87_RS03450 0.33 -2.5
719,858 - ABZR87_RS03450 0.33 -1.4
720,146 + ABZR87_RS03450 0.45 -2.7
720,146 + ABZR87_RS03450 0.45 -2.9
720,147 - ABZR87_RS03450 0.45 -1.2
720,147 - ABZR87_RS03450 0.45 -2.2
720,147 - ABZR87_RS03450 0.45 -1.1
720,299 + ABZR87_RS03450 0.52 -2.7
720,299 + ABZR87_RS03450 0.52 -1.8
720,300 - ABZR87_RS03450 0.52 -3.2
720,300 - ABZR87_RS03450 0.52 +0.4
720,353 + ABZR87_RS03450 0.54 +1.5
720,353 + ABZR87_RS03450 0.54 -0.8
720,353 + ABZR87_RS03450 0.54 -1.3
720,353 + ABZR87_RS03450 0.54 -1.2
720,353 + ABZR87_RS03450 0.54 -1.1
720,354 - ABZR87_RS03450 0.54 -0.6
720,354 - ABZR87_RS03450 0.54 -1.0
720,354 - ABZR87_RS03450 0.54 -0.6
720,354 - ABZR87_RS03450 0.54 -0.8
720,354 - ABZR87_RS03450 0.54 -1.4
720,464 + ABZR87_RS03450 0.59 -1.9
720,464 + ABZR87_RS03450 0.59 -3.1
720,465 - ABZR87_RS03450 0.59 -1.8
720,465 - ABZR87_RS03450 0.59 -0.3
720,465 - ABZR87_RS03450 0.59 +0.2
720,465 - ABZR87_RS03450 0.59 -0.3
720,465 - ABZR87_RS03450 0.59 -1.9
720,465 - ABZR87_RS03450 0.59 -2.2
720,465 - ABZR87_RS03450 0.59 -2.5
720,756 - ABZR87_RS03450 0.71 -4.0
720,756 - ABZR87_RS03450 0.71 -1.8
721,016 + ABZR87_RS03450 0.81 -2.8
721,017 - ABZR87_RS03450 0.81 +0.3
721,017 - ABZR87_RS03450 0.81 -0.2
721,017 - ABZR87_RS03450 0.81 -3.6
721,144 + ABZR87_RS03450 0.87 -2.2
721,144 + ABZR87_RS03450 0.87 -0.6
721,181 + ABZR87_RS03450 0.88 -1.9
721,181 + ABZR87_RS03450 0.88 -1.4
721,182 - ABZR87_RS03450 0.88 -3.4
721,182 - ABZR87_RS03450 0.88 -3.0
721,182 - ABZR87_RS03450 0.88 -1.9
721,187 + ABZR87_RS03450 0.88 -1.8
721,187 + ABZR87_RS03450 0.88 -0.1
721,188 - ABZR87_RS03450 0.89 -2.2
721,188 - ABZR87_RS03450 0.89 -1.6
721,188 - ABZR87_RS03450 0.89 -1.2
721,188 - ABZR87_RS03450 0.89 -1.2
721,188 - ABZR87_RS03450 0.89 -3.3
721,188 - ABZR87_RS03450 0.89 -1.9
721,188 - ABZR87_RS03450 0.89 -1.4
721,188 - ABZR87_RS03450 0.89 -1.3
721,188 - ABZR87_RS03450 0.89 -0.6
721,298 + -2.6
721,298 + -0.5
721,298 + -1.0
721,298 + -1.6
721,298 + -2.2
721,299 - -3.0
721,299 - +0.9
721,299 - -0.3
721,299 - -1.6
721,299 - -0.3
721,299 - -1.4
721,337 - -1.7
721,434 - -0.7
721,557 + -1.4
721,691 - ABZR87_RS03455 0.13 -2.3
721,734 + ABZR87_RS03455 0.16 -0.3
721,734 + ABZR87_RS03455 0.16 -1.3
721,734 + ABZR87_RS03455 0.16 -3.5
721,735 - ABZR87_RS03455 0.16 -0.6
721,735 - ABZR87_RS03455 0.16 -1.1
721,735 - ABZR87_RS03455 0.16 -1.2
721,886 + ABZR87_RS03455 0.26 -0.9
721,887 - ABZR87_RS03455 0.26 -2.1
721,887 - ABZR87_RS03455 0.26 -2.7
722,113 + ABZR87_RS03455 0.41 -2.8
722,113 + ABZR87_RS03455 0.41 +0.3
722,213 + ABZR87_RS03455 0.47 +2.4
722,316 + ABZR87_RS03455 0.54 -1.1
722,316 + ABZR87_RS03455 0.54 -2.6
722,316 + ABZR87_RS03455 0.54 -1.5
722,317 - ABZR87_RS03455 0.54 -4.0
722,382 + ABZR87_RS03455 0.58 -0.9
722,382 + ABZR87_RS03455 0.58 -2.0
722,383 - ABZR87_RS03455 0.58 -0.9
722,383 - ABZR87_RS03455 0.58 -0.5
722,383 - ABZR87_RS03455 0.58 -2.9
722,383 - ABZR87_RS03455 0.58 -2.8
722,383 - ABZR87_RS03455 0.58 -3.6

Or see this region's nucleotide sequence