Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02500 and ABZR87_RS02505 overlap by 4 nucleotides ABZR87_RS02505 and ABZR87_RS02510 are separated by 19 nucleotides ABZR87_RS02510 and ABZR87_RS02515 are separated by 98 nucleotides ABZR87_RS02515 and ABZR87_RS02520 are separated by 59 nucleotides
ABZR87_RS02500: ABZR87_RS02500 - histidinol dehydrogenase, at 529,891 to 531,219
_RS02500
ABZR87_RS02505: ABZR87_RS02505 - ATP phosphoribosyltransferase, at 531,216 to 531,905
_RS02505
ABZR87_RS02510: ABZR87_RS02510 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 531,925 to 533,190
_RS02510
ABZR87_RS02515: ABZR87_RS02515 - BolA family protein, at 533,289 to 533,525
_RS02515
ABZR87_RS02520: ABZR87_RS02520 - ABC transporter permease, at 533,585 to 534,373
_RS02520
Position (kb) 531
532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 531.517 kb on + strand, within ABZR87_RS02505 at 531.566 kb on - strand, within ABZR87_RS02505 at 531.921 kb on + strand at 531.922 kb on - strand at 531.922 kb on - strand at 531.922 kb on - strand at 531.926 kb on + strand at 531.926 kb on + strand at 531.927 kb on - strand at 533.495 kb on - strand, within ABZR87_RS02515 at 533.495 kb on - strand, within ABZR87_RS02515 at 533.602 kb on - strand at 533.710 kb on - strand, within ABZR87_RS02520 at 533.730 kb on + strand, within ABZR87_RS02520 at 533.731 kb on - strand, within ABZR87_RS02520 at 533.732 kb on + strand, within ABZR87_RS02520 at 533.791 kb on - strand, within ABZR87_RS02520 at 533.791 kb on - strand, within ABZR87_RS02520 at 533.791 kb on - strand, within ABZR87_RS02520 at 533.791 kb on - strand, within ABZR87_RS02520 at 533.791 kb on - strand, within ABZR87_RS02520 at 533.873 kb on - strand, within ABZR87_RS02520 at 533.954 kb on + strand, within ABZR87_RS02520 at 533.954 kb on + strand, within ABZR87_RS02520 at 533.954 kb on + strand, within ABZR87_RS02520 at 533.954 kb on + strand, within ABZR87_RS02520 at 533.954 kb on + strand, within ABZR87_RS02520 at 533.955 kb on - strand, within ABZR87_RS02520 at 533.955 kb on - strand, within ABZR87_RS02520 at 534.031 kb on - strand, within ABZR87_RS02520 at 534.031 kb on - strand, within ABZR87_RS02520 at 534.031 kb on - strand, within ABZR87_RS02520 at 534.031 kb on - strand, within ABZR87_RS02520 at 534.031 kb on - strand, within ABZR87_RS02520 at 534.031 kb on - strand, within ABZR87_RS02520 at 534.184 kb on - strand, within ABZR87_RS02520 at 534.184 kb on - strand, within ABZR87_RS02520 at 534.184 kb on - strand, within ABZR87_RS02520 at 534.184 kb on - strand, within ABZR87_RS02520 at 534.184 kb on - strand, within ABZR87_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 531,517 + ABZR87_RS02505 0.44 +3.4 531,566 - ABZR87_RS02505 0.51 +2.4 531,921 + -1.4 531,922 - -1.1 531,922 - +0.4 531,922 - -0.3 531,926 + +3.4 531,926 + +2.4 531,927 - +0.0 533,495 - ABZR87_RS02515 0.87 -0.0 533,495 - ABZR87_RS02515 0.87 -0.8 533,602 - -1.0 533,710 - ABZR87_RS02520 0.16 -0.6 533,730 + ABZR87_RS02520 0.18 +2.4 533,731 - ABZR87_RS02520 0.19 +0.1 533,732 + ABZR87_RS02520 0.19 +1.4 533,791 - ABZR87_RS02520 0.26 +0.4 533,791 - ABZR87_RS02520 0.26 +0.4 533,791 - ABZR87_RS02520 0.26 -2.1 533,791 - ABZR87_RS02520 0.26 -0.1 533,791 - ABZR87_RS02520 0.26 -0.9 533,873 - ABZR87_RS02520 0.37 +0.4 533,954 + ABZR87_RS02520 0.47 +0.1 533,954 + ABZR87_RS02520 0.47 -0.8 533,954 + ABZR87_RS02520 0.47 +1.0 533,954 + ABZR87_RS02520 0.47 +1.0 533,954 + ABZR87_RS02520 0.47 +0.4 533,955 - ABZR87_RS02520 0.47 +1.0 533,955 - ABZR87_RS02520 0.47 -2.4 534,031 - ABZR87_RS02520 0.57 +0.2 534,031 - ABZR87_RS02520 0.57 +0.6 534,031 - ABZR87_RS02520 0.57 +0.2 534,031 - ABZR87_RS02520 0.57 +0.2 534,031 - ABZR87_RS02520 0.57 +0.7 534,031 - ABZR87_RS02520 0.57 +0.5 534,184 - ABZR87_RS02520 0.76 +0.3 534,184 - ABZR87_RS02520 0.76 -0.7 534,184 - ABZR87_RS02520 0.76 +0.9 534,184 - ABZR87_RS02520 0.76 +1.8 534,184 - ABZR87_RS02520 0.76 -0.5
Or see this region's nucleotide sequence