Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02365 and ABZR87_RS02370 are separated by 72 nucleotides ABZR87_RS02370 and ABZR87_RS02375 are separated by 150 nucleotides ABZR87_RS02375 and ABZR87_RS02380 are separated by 37 nucleotides
ABZR87_RS02365: ABZR87_RS02365 - ClpXP protease specificity-enhancing factor, at 505,859 to 506,356
_RS02365
ABZR87_RS02370: ABZR87_RS02370 - glutathione S-transferase N-terminal domain-containing protein, at 506,429 to 507,040
_RS02370
ABZR87_RS02375: ABZR87_RS02375 - cytochrome c1, at 507,191 to 507,934
_RS02375
ABZR87_RS02380: ABZR87_RS02380 - cytochrome bc complex cytochrome b subunit, at 507,972 to 509,375
_RS02380
Position (kb) 507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 506.280 kb on + strand, within ABZR87_RS02365 at 506.280 kb on + strand, within ABZR87_RS02365 at 506.281 kb on - strand, within ABZR87_RS02365 at 506.313 kb on + strand at 506.313 kb on + strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.314 kb on - strand at 506.331 kb on + strand at 506.331 kb on + strand at 506.332 kb on - strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.087 kb on - strand at 507.144 kb on - strand at 507.144 kb on - strand at 507.144 kb on - strand at 507.166 kb on - strand at 507.193 kb on - strand at 507.211 kb on - strand at 507.264 kb on - strand at 507.264 kb on - strand at 507.321 kb on + strand, within ABZR87_RS02375 at 507.321 kb on + strand, within ABZR87_RS02375 at 507.321 kb on + strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.322 kb on - strand, within ABZR87_RS02375 at 507.351 kb on + strand, within ABZR87_RS02375 at 507.352 kb on - strand, within ABZR87_RS02375 at 507.355 kb on - strand, within ABZR87_RS02375 at 507.441 kb on + strand, within ABZR87_RS02375 at 507.543 kb on + strand, within ABZR87_RS02375 at 507.543 kb on + strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.544 kb on - strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.558 kb on + strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.559 kb on - strand, within ABZR87_RS02375 at 507.564 kb on + strand, within ABZR87_RS02375 at 507.564 kb on + strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.565 kb on - strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.747 kb on + strand, within ABZR87_RS02375 at 507.748 kb on - strand, within ABZR87_RS02375 at 507.783 kb on + strand, within ABZR87_RS02375 at 507.783 kb on + strand, within ABZR87_RS02375 at 507.783 kb on + strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.784 kb on - strand, within ABZR87_RS02375 at 507.970 kb on + strand at 507.971 kb on - strand at 508.060 kb on + strand at 508.060 kb on + strand at 508.061 kb on - strand at 508.123 kb on + strand, within ABZR87_RS02380 at 508.124 kb on - strand, within ABZR87_RS02380 at 508.441 kb on + strand, within ABZR87_RS02380 at 508.442 kb on - strand, within ABZR87_RS02380 at 508.442 kb on - strand, within ABZR87_RS02380 at 508.528 kb on + strand, within ABZR87_RS02380 at 508.528 kb on + strand, within ABZR87_RS02380 at 508.529 kb on - strand, within ABZR87_RS02380 at 508.529 kb on - strand, within ABZR87_RS02380 at 508.613 kb on - strand, within ABZR87_RS02380 at 508.615 kb on + strand, within ABZR87_RS02380 at 508.615 kb on + strand, within ABZR87_RS02380 at 508.616 kb on - strand, within ABZR87_RS02380 at 508.617 kb on - strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.810 kb on + strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.811 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.895 kb on - strand, within ABZR87_RS02380 at 508.921 kb on + strand, within ABZR87_RS02380 at 508.921 kb on + strand, within ABZR87_RS02380 at 508.922 kb on - strand, within ABZR87_RS02380
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 506,280 + ABZR87_RS02365 0.85 -0.1 506,280 + ABZR87_RS02365 0.85 +1.4 506,281 - ABZR87_RS02365 0.85 +0.9 506,313 + +0.6 506,313 + -0.6 506,314 - +1.1 506,314 - +1.6 506,314 - +1.7 506,314 - -0.0 506,331 + +2.0 506,331 + +1.3 506,332 - +1.2 507,087 - -0.7 507,087 - +0.9 507,087 - -0.1 507,144 - +2.2 507,144 - -0.2 507,144 - -0.2 507,166 - -1.1 507,193 - -0.1 507,211 - -0.6 507,264 - -2.2 507,264 - -2.2 507,321 + ABZR87_RS02375 0.17 +0.4 507,321 + ABZR87_RS02375 0.17 -0.4 507,321 + ABZR87_RS02375 0.17 -0.1 507,322 - ABZR87_RS02375 0.18 -0.9 507,322 - ABZR87_RS02375 0.18 -2.8 507,322 - ABZR87_RS02375 0.18 -0.3 507,322 - ABZR87_RS02375 0.18 -1.7 507,322 - ABZR87_RS02375 0.18 -1.3 507,322 - ABZR87_RS02375 0.18 -1.9 507,351 + ABZR87_RS02375 0.22 -0.5 507,352 - ABZR87_RS02375 0.22 -2.4 507,355 - ABZR87_RS02375 0.22 -2.3 507,441 + ABZR87_RS02375 0.34 -1.4 507,543 + ABZR87_RS02375 0.47 -2.4 507,543 + ABZR87_RS02375 0.47 -0.6 507,544 - ABZR87_RS02375 0.47 -1.5 507,544 - ABZR87_RS02375 0.47 -0.1 507,544 - ABZR87_RS02375 0.47 -1.7 507,544 - ABZR87_RS02375 0.47 -1.6 507,558 + ABZR87_RS02375 0.49 -1.8 507,558 + ABZR87_RS02375 0.49 -1.4 507,558 + ABZR87_RS02375 0.49 -0.5 507,558 + ABZR87_RS02375 0.49 +2.4 507,558 + ABZR87_RS02375 0.49 -1.4 507,559 - ABZR87_RS02375 0.49 -1.1 507,559 - ABZR87_RS02375 0.49 -2.8 507,559 - ABZR87_RS02375 0.49 -0.9 507,559 - ABZR87_RS02375 0.49 -2.3 507,564 + ABZR87_RS02375 0.50 -0.7 507,564 + ABZR87_RS02375 0.50 +1.4 507,565 - ABZR87_RS02375 0.50 -2.1 507,565 - ABZR87_RS02375 0.50 -0.7 507,565 - ABZR87_RS02375 0.50 -0.7 507,565 - ABZR87_RS02375 0.50 -0.9 507,565 - ABZR87_RS02375 0.50 -1.5 507,747 + ABZR87_RS02375 0.75 +0.4 507,747 + ABZR87_RS02375 0.75 -2.5 507,747 + ABZR87_RS02375 0.75 -0.5 507,747 + ABZR87_RS02375 0.75 -2.2 507,747 + ABZR87_RS02375 0.75 -0.3 507,748 - ABZR87_RS02375 0.75 -1.6 507,783 + ABZR87_RS02375 0.80 -1.4 507,783 + ABZR87_RS02375 0.80 -0.6 507,783 + ABZR87_RS02375 0.80 -1.6 507,784 - ABZR87_RS02375 0.80 -1.5 507,784 - ABZR87_RS02375 0.80 +0.2 507,784 - ABZR87_RS02375 0.80 -3.2 507,784 - ABZR87_RS02375 0.80 -2.4 507,784 - ABZR87_RS02375 0.80 -2.9 507,970 + +0.0 507,971 - -0.9 508,060 + -3.3 508,060 + -2.6 508,061 - -2.1 508,123 + ABZR87_RS02380 0.11 -1.6 508,124 - ABZR87_RS02380 0.11 -0.2 508,441 + ABZR87_RS02380 0.33 -2.4 508,442 - ABZR87_RS02380 0.33 -2.5 508,442 - ABZR87_RS02380 0.33 -2.6 508,528 + ABZR87_RS02380 0.40 -2.2 508,528 + ABZR87_RS02380 0.40 -2.1 508,529 - ABZR87_RS02380 0.40 -3.4 508,529 - ABZR87_RS02380 0.40 -1.4 508,613 - ABZR87_RS02380 0.46 -1.0 508,615 + ABZR87_RS02380 0.46 -1.4 508,615 + ABZR87_RS02380 0.46 -2.7 508,616 - ABZR87_RS02380 0.46 -1.3 508,617 - ABZR87_RS02380 0.46 +1.4 508,810 + ABZR87_RS02380 0.60 -0.9 508,810 + ABZR87_RS02380 0.60 -0.5 508,810 + ABZR87_RS02380 0.60 -2.3 508,810 + ABZR87_RS02380 0.60 +1.4 508,810 + ABZR87_RS02380 0.60 -2.0 508,810 + ABZR87_RS02380 0.60 -0.5 508,810 + ABZR87_RS02380 0.60 -2.2 508,810 + ABZR87_RS02380 0.60 -1.3 508,811 - ABZR87_RS02380 0.60 -1.6 508,811 - ABZR87_RS02380 0.60 -2.2 508,811 - ABZR87_RS02380 0.60 -1.5 508,811 - ABZR87_RS02380 0.60 -1.7 508,811 - ABZR87_RS02380 0.60 -0.5 508,811 - ABZR87_RS02380 0.60 -1.6 508,895 - ABZR87_RS02380 0.66 -1.0 508,895 - ABZR87_RS02380 0.66 -1.0 508,895 - ABZR87_RS02380 0.66 -2.7 508,921 + ABZR87_RS02380 0.68 -0.8 508,921 + ABZR87_RS02380 0.68 -1.1 508,922 - ABZR87_RS02380 0.68 -1.8
Or see this region's nucleotide sequence