Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02025

Experiment: no_plant_rhizosphere sample 1; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02020 and ABZR87_RS02025 are separated by 151 nucleotidesABZR87_RS02025 and ABZR87_RS02030 are separated by 10 nucleotides ABZR87_RS02020: ABZR87_RS02020 - long-chain fatty acid--CoA ligase, at 430,061 to 431,770 _RS02020 ABZR87_RS02025: ABZR87_RS02025 - aminopeptidase, at 431,922 to 433,019 _RS02025 ABZR87_RS02030: ABZR87_RS02030 - molybdopterin oxidoreductase family protein, at 433,030 to 435,126 _RS02030 Position (kb) 431 432 433 434Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 430.962 kb on + strand, within ABZR87_RS02020at 430.962 kb on + strand, within ABZR87_RS02020at 430.963 kb on - strand, within ABZR87_RS02020at 430.963 kb on - strand, within ABZR87_RS02020at 430.963 kb on - strand, within ABZR87_RS02020at 430.963 kb on - strand, within ABZR87_RS02020at 430.963 kb on - strand, within ABZR87_RS02020at 431.136 kb on + strand, within ABZR87_RS02020at 431.136 kb on + strand, within ABZR87_RS02020at 431.136 kb on + strand, within ABZR87_RS02020at 431.136 kb on + strand, within ABZR87_RS02020at 431.137 kb on - strand, within ABZR87_RS02020at 431.137 kb on - strand, within ABZR87_RS02020at 431.350 kb on + strand, within ABZR87_RS02020at 431.451 kb on + strand, within ABZR87_RS02020at 431.451 kb on + strand, within ABZR87_RS02020at 431.452 kb on - strand, within ABZR87_RS02020at 431.452 kb on - strand, within ABZR87_RS02020at 431.452 kb on - strand, within ABZR87_RS02020at 431.478 kb on + strand, within ABZR87_RS02020at 431.478 kb on + strand, within ABZR87_RS02020at 431.479 kb on - strand, within ABZR87_RS02020at 431.514 kb on + strand, within ABZR87_RS02020at 431.514 kb on + strand, within ABZR87_RS02020at 431.515 kb on - strand, within ABZR87_RS02020at 431.605 kb on + strandat 431.605 kb on + strandat 431.606 kb on - strandat 431.606 kb on - strandat 431.619 kb on + strandat 431.620 kb on - strandat 431.620 kb on - strandat 431.620 kb on - strandat 431.620 kb on - strandat 431.706 kb on + strandat 431.706 kb on + strandat 431.746 kb on - strandat 431.764 kb on + strandat 431.764 kb on + strandat 431.764 kb on + strandat 431.765 kb on - strandat 431.832 kb on + strandat 431.832 kb on + strandat 431.832 kb on + strandat 431.832 kb on + strandat 431.833 kb on - strandat 431.857 kb on + strandat 431.857 kb on + strandat 431.863 kb on - strandat 431.863 kb on - strandat 431.863 kb on - strandat 431.863 kb on - strandat 431.863 kb on - strandat 431.863 kb on - strandat 431.863 kb on - strandat 431.967 kb on + strandat 431.967 kb on + strandat 431.968 kb on - strandat 432.031 kb on + strandat 432.031 kb on + strandat 432.031 kb on + strandat 432.032 kb on - strand, within ABZR87_RS02025at 432.032 kb on - strand, within ABZR87_RS02025at 432.032 kb on - strand, within ABZR87_RS02025at 432.064 kb on + strand, within ABZR87_RS02025at 432.065 kb on - strand, within ABZR87_RS02025at 432.065 kb on - strand, within ABZR87_RS02025at 432.065 kb on - strand, within ABZR87_RS02025at 432.065 kb on - strand, within ABZR87_RS02025at 432.065 kb on - strand, within ABZR87_RS02025at 432.097 kb on + strand, within ABZR87_RS02025at 432.097 kb on + strand, within ABZR87_RS02025at 432.097 kb on + strand, within ABZR87_RS02025at 432.097 kb on + strand, within ABZR87_RS02025at 432.161 kb on + strand, within ABZR87_RS02025at 432.162 kb on - strand, within ABZR87_RS02025at 432.162 kb on - strand, within ABZR87_RS02025at 432.162 kb on - strand, within ABZR87_RS02025at 432.162 kb on - strand, within ABZR87_RS02025at 432.164 kb on - strand, within ABZR87_RS02025at 432.164 kb on - strand, within ABZR87_RS02025at 432.164 kb on - strand, within ABZR87_RS02025at 432.193 kb on + strand, within ABZR87_RS02025at 432.193 kb on + strand, within ABZR87_RS02025at 432.193 kb on + strand, within ABZR87_RS02025at 432.265 kb on + strand, within ABZR87_RS02025at 432.265 kb on + strand, within ABZR87_RS02025at 432.265 kb on + strand, within ABZR87_RS02025at 432.265 kb on + strand, within ABZR87_RS02025at 432.265 kb on + strand, within ABZR87_RS02025at 432.266 kb on - strand, within ABZR87_RS02025at 432.266 kb on - strand, within ABZR87_RS02025at 432.266 kb on - strand, within ABZR87_RS02025at 432.266 kb on - strand, within ABZR87_RS02025at 432.266 kb on - strand, within ABZR87_RS02025at 432.266 kb on - strand, within ABZR87_RS02025at 432.315 kb on + strand, within ABZR87_RS02025at 432.315 kb on + strand, within ABZR87_RS02025at 432.316 kb on - strand, within ABZR87_RS02025at 432.331 kb on + strand, within ABZR87_RS02025at 432.331 kb on + strand, within ABZR87_RS02025at 432.331 kb on + strand, within ABZR87_RS02025at 432.331 kb on + strand, within ABZR87_RS02025at 432.331 kb on + strand, within ABZR87_RS02025at 432.332 kb on - strand, within ABZR87_RS02025at 432.332 kb on - strand, within ABZR87_RS02025at 432.332 kb on - strand, within ABZR87_RS02025at 432.332 kb on - strand, within ABZR87_RS02025at 432.332 kb on - strand, within ABZR87_RS02025at 432.332 kb on - strand, within ABZR87_RS02025at 432.332 kb on - strand, within ABZR87_RS02025at 432.340 kb on + strand, within ABZR87_RS02025at 432.341 kb on - strand, within ABZR87_RS02025at 432.341 kb on - strand, within ABZR87_RS02025at 432.435 kb on - strand, within ABZR87_RS02025at 432.448 kb on + strand, within ABZR87_RS02025at 432.449 kb on - strand, within ABZR87_RS02025at 432.449 kb on - strand, within ABZR87_RS02025at 432.542 kb on - strand, within ABZR87_RS02025at 432.542 kb on - strand, within ABZR87_RS02025at 432.542 kb on - strand, within ABZR87_RS02025at 432.600 kb on + strand, within ABZR87_RS02025at 432.600 kb on + strand, within ABZR87_RS02025at 432.600 kb on + strand, within ABZR87_RS02025at 432.601 kb on - strand, within ABZR87_RS02025at 432.613 kb on + strand, within ABZR87_RS02025at 432.614 kb on - strand, within ABZR87_RS02025at 432.614 kb on - strand, within ABZR87_RS02025at 432.614 kb on - strand, within ABZR87_RS02025at 432.618 kb on + strand, within ABZR87_RS02025at 432.619 kb on - strand, within ABZR87_RS02025at 432.637 kb on + strand, within ABZR87_RS02025at 432.637 kb on + strand, within ABZR87_RS02025at 432.638 kb on - strand, within ABZR87_RS02025at 432.638 kb on - strand, within ABZR87_RS02025at 432.649 kb on + strand, within ABZR87_RS02025at 432.650 kb on - strand, within ABZR87_RS02025at 432.650 kb on - strand, within ABZR87_RS02025at 432.754 kb on + strand, within ABZR87_RS02025at 432.754 kb on + strand, within ABZR87_RS02025at 432.755 kb on - strand, within ABZR87_RS02025at 432.763 kb on + strand, within ABZR87_RS02025at 432.764 kb on - strand, within ABZR87_RS02025at 432.802 kb on + strand, within ABZR87_RS02025at 432.802 kb on + strand, within ABZR87_RS02025at 432.802 kb on + strand, within ABZR87_RS02025at 432.802 kb on + strand, within ABZR87_RS02025at 432.802 kb on + strand, within ABZR87_RS02025at 432.802 kb on + strand, within ABZR87_RS02025at 432.802 kb on - strand, within ABZR87_RS02025at 432.803 kb on - strand, within ABZR87_RS02025at 432.803 kb on - strand, within ABZR87_RS02025at 432.803 kb on - strand, within ABZR87_RS02025at 432.934 kb on + strandat 432.934 kb on + strandat 432.935 kb on - strandat 432.935 kb on - strandat 432.935 kb on - strandat 432.935 kb on - strandat 432.937 kb on + strandat 432.937 kb on + strandat 432.937 kb on + strandat 432.937 kb on + strandat 432.938 kb on - strandat 432.938 kb on - strandat 432.938 kb on - strandat 432.938 kb on - strandat 432.938 kb on - strandat 432.938 kb on - strandat 432.938 kb on - strandat 432.940 kb on + strandat 432.941 kb on - strandat 433.073 kb on + strandat 433.073 kb on + strandat 433.073 kb on + strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.074 kb on - strandat 433.451 kb on + strand, within ABZR87_RS02030at 433.451 kb on + strand, within ABZR87_RS02030at 433.451 kb on + strand, within ABZR87_RS02030at 433.451 kb on + strand, within ABZR87_RS02030at 433.451 kb on + strand, within ABZR87_RS02030at 433.451 kb on + strand, within ABZR87_RS02030at 433.452 kb on - strand, within ABZR87_RS02030at 433.452 kb on - strand, within ABZR87_RS02030at 433.452 kb on - strand, within ABZR87_RS02030at 433.496 kb on + strand, within ABZR87_RS02030at 433.681 kb on - strand, within ABZR87_RS02030at 433.715 kb on + strand, within ABZR87_RS02030at 433.772 kb on + strand, within ABZR87_RS02030at 433.773 kb on - strand, within ABZR87_RS02030at 433.773 kb on - strand, within ABZR87_RS02030at 433.773 kb on - strand, within ABZR87_RS02030at 433.773 kb on - strand, within ABZR87_RS02030at 433.773 kb on - strand, within ABZR87_RS02030at 433.773 kb on - strand, within ABZR87_RS02030at 433.773 kb on - strand, within ABZR87_RS02030at 433.784 kb on + strand, within ABZR87_RS02030at 433.784 kb on + strand, within ABZR87_RS02030at 433.785 kb on - strand, within ABZR87_RS02030at 433.785 kb on - strand, within ABZR87_RS02030at 433.785 kb on - strand, within ABZR87_RS02030at 433.785 kb on - strand, within ABZR87_RS02030at 433.785 kb on - strand, within ABZR87_RS02030at 433.785 kb on - strand, within ABZR87_RS02030at 433.845 kb on - strand, within ABZR87_RS02030at 433.845 kb on - strand, within ABZR87_RS02030at 433.958 kb on + strand, within ABZR87_RS02030at 433.959 kb on - strand, within ABZR87_RS02030at 433.959 kb on - strand, within ABZR87_RS02030

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Per-strain Table

Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB
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430,962 + ABZR87_RS02020 0.53 -1.1
430,962 + ABZR87_RS02020 0.53 -0.9
430,963 - ABZR87_RS02020 0.53 -2.4
430,963 - ABZR87_RS02020 0.53 -0.3
430,963 - ABZR87_RS02020 0.53 +0.0
430,963 - ABZR87_RS02020 0.53 -0.9
430,963 - ABZR87_RS02020 0.53 -0.4
431,136 + ABZR87_RS02020 0.63 -0.9
431,136 + ABZR87_RS02020 0.63 +0.4
431,136 + ABZR87_RS02020 0.63 -0.0
431,136 + ABZR87_RS02020 0.63 -0.2
431,137 - ABZR87_RS02020 0.63 -1.0
431,137 - ABZR87_RS02020 0.63 -0.2
431,350 + ABZR87_RS02020 0.75 -2.4
431,451 + ABZR87_RS02020 0.81 -1.1
431,451 + ABZR87_RS02020 0.81 -1.5
431,452 - ABZR87_RS02020 0.81 -3.0
431,452 - ABZR87_RS02020 0.81 +0.1
431,452 - ABZR87_RS02020 0.81 -0.2
431,478 + ABZR87_RS02020 0.83 -0.2
431,478 + ABZR87_RS02020 0.83 -0.6
431,479 - ABZR87_RS02020 0.83 -2.8
431,514 + ABZR87_RS02020 0.85 -0.7
431,514 + ABZR87_RS02020 0.85 -0.4
431,515 - ABZR87_RS02020 0.85 -0.5
431,605 + -0.1
431,605 + -1.1
431,606 - -0.8
431,606 - -0.0
431,619 + +0.3
431,620 - -1.1
431,620 - -0.7
431,620 - -1.3
431,620 - -0.4
431,706 + -2.3
431,706 + +0.1
431,746 - -0.8
431,764 + -1.9
431,764 + +0.5
431,764 + -0.7
431,765 - +0.6
431,832 + -1.0
431,832 + -0.4
431,832 + +0.0
431,832 + -0.9
431,833 - -0.1
431,857 + -0.4
431,857 + +0.1
431,863 - +0.6
431,863 - +0.3
431,863 - +0.9
431,863 - -0.5
431,863 - -0.6
431,863 - -0.6
431,863 - +1.2
431,967 + -0.5
431,967 + -0.4
431,968 - +0.4
432,031 + -0.1
432,031 + -1.1
432,031 + +0.8
432,032 - ABZR87_RS02025 0.10 -0.8
432,032 - ABZR87_RS02025 0.10 +0.1
432,032 - ABZR87_RS02025 0.10 +0.3
432,064 + ABZR87_RS02025 0.13 +1.5
432,065 - ABZR87_RS02025 0.13 +0.9
432,065 - ABZR87_RS02025 0.13 +0.5
432,065 - ABZR87_RS02025 0.13 +1.1
432,065 - ABZR87_RS02025 0.13 +1.2
432,065 - ABZR87_RS02025 0.13 +0.1
432,097 + ABZR87_RS02025 0.16 +0.2
432,097 + ABZR87_RS02025 0.16 +0.7
432,097 + ABZR87_RS02025 0.16 +0.4
432,097 + ABZR87_RS02025 0.16 -0.9
432,161 + ABZR87_RS02025 0.22 -0.6
432,162 - ABZR87_RS02025 0.22 +0.0
432,162 - ABZR87_RS02025 0.22 -3.3
432,162 - ABZR87_RS02025 0.22 -0.8
432,162 - ABZR87_RS02025 0.22 -0.4
432,164 - ABZR87_RS02025 0.22 -0.4
432,164 - ABZR87_RS02025 0.22 -2.1
432,164 - ABZR87_RS02025 0.22 +1.3
432,193 + ABZR87_RS02025 0.25 -1.0
432,193 + ABZR87_RS02025 0.25 -0.1
432,193 + ABZR87_RS02025 0.25 +1.5
432,265 + ABZR87_RS02025 0.31 +1.2
432,265 + ABZR87_RS02025 0.31 +0.1
432,265 + ABZR87_RS02025 0.31 -0.7
432,265 + ABZR87_RS02025 0.31 +0.3
432,265 + ABZR87_RS02025 0.31 -0.3
432,266 - ABZR87_RS02025 0.31 +0.1
432,266 - ABZR87_RS02025 0.31 +0.3
432,266 - ABZR87_RS02025 0.31 +0.2
432,266 - ABZR87_RS02025 0.31 +0.0
432,266 - ABZR87_RS02025 0.31 +0.6
432,266 - ABZR87_RS02025 0.31 +1.0
432,315 + ABZR87_RS02025 0.36 +0.2
432,315 + ABZR87_RS02025 0.36 -0.0
432,316 - ABZR87_RS02025 0.36 -0.3
432,331 + ABZR87_RS02025 0.37 -0.3
432,331 + ABZR87_RS02025 0.37 -1.2
432,331 + ABZR87_RS02025 0.37 +1.2
432,331 + ABZR87_RS02025 0.37 -0.3
432,331 + ABZR87_RS02025 0.37 -0.6
432,332 - ABZR87_RS02025 0.37 -1.0
432,332 - ABZR87_RS02025 0.37 +0.7
432,332 - ABZR87_RS02025 0.37 +0.0
432,332 - ABZR87_RS02025 0.37 +0.1
432,332 - ABZR87_RS02025 0.37 -1.1
432,332 - ABZR87_RS02025 0.37 +0.6
432,332 - ABZR87_RS02025 0.37 -0.4
432,340 + ABZR87_RS02025 0.38 -0.2
432,341 - ABZR87_RS02025 0.38 -1.4
432,341 - ABZR87_RS02025 0.38 +0.6
432,435 - ABZR87_RS02025 0.47 +1.3
432,448 + ABZR87_RS02025 0.48 +0.0
432,449 - ABZR87_RS02025 0.48 +0.1
432,449 - ABZR87_RS02025 0.48 +0.4
432,542 - ABZR87_RS02025 0.56 +0.0
432,542 - ABZR87_RS02025 0.56 +0.9
432,542 - ABZR87_RS02025 0.56 -0.5
432,600 + ABZR87_RS02025 0.62 -1.4
432,600 + ABZR87_RS02025 0.62 -0.0
432,600 + ABZR87_RS02025 0.62 +1.0
432,601 - ABZR87_RS02025 0.62 -1.9
432,613 + ABZR87_RS02025 0.63 +0.1
432,614 - ABZR87_RS02025 0.63 +0.1
432,614 - ABZR87_RS02025 0.63 -1.3
432,614 - ABZR87_RS02025 0.63 +0.5
432,618 + ABZR87_RS02025 0.63 +1.2
432,619 - ABZR87_RS02025 0.63 -1.4
432,637 + ABZR87_RS02025 0.65 -0.4
432,637 + ABZR87_RS02025 0.65 +1.0
432,638 - ABZR87_RS02025 0.65 -0.4
432,638 - ABZR87_RS02025 0.65 +1.0
432,649 + ABZR87_RS02025 0.66 -0.2
432,650 - ABZR87_RS02025 0.66 -0.9
432,650 - ABZR87_RS02025 0.66 -0.6
432,754 + ABZR87_RS02025 0.76 +1.7
432,754 + ABZR87_RS02025 0.76 -0.1
432,755 - ABZR87_RS02025 0.76 +2.4
432,763 + ABZR87_RS02025 0.77 +0.1
432,764 - ABZR87_RS02025 0.77 -0.2
432,802 + ABZR87_RS02025 0.80 +0.2
432,802 + ABZR87_RS02025 0.80 -0.5
432,802 + ABZR87_RS02025 0.80 +0.0
432,802 + ABZR87_RS02025 0.80 +0.7
432,802 + ABZR87_RS02025 0.80 -0.7
432,802 + ABZR87_RS02025 0.80 -1.9
432,802 - ABZR87_RS02025 0.80 -1.0
432,803 - ABZR87_RS02025 0.80 -0.0
432,803 - ABZR87_RS02025 0.80 +0.3
432,803 - ABZR87_RS02025 0.80 -0.4
432,934 + +0.1
432,934 + +0.1
432,935 - -0.1
432,935 - +1.0
432,935 - +0.2
432,935 - +0.3
432,937 + +1.1
432,937 + -0.5
432,937 + +1.2
432,937 + +0.3
432,938 - +0.4
432,938 - +0.1
432,938 - -0.9
432,938 - +0.2
432,938 - +0.0
432,938 - -1.0
432,938 - -0.5
432,940 + +0.5
432,941 - +2.0
433,073 + -2.0
433,073 + -2.2
433,073 + -0.6
433,074 - -0.1
433,074 - -0.2
433,074 - -0.4
433,074 - -0.3
433,074 - -0.0
433,074 - +0.7
433,074 - -0.8
433,074 - +3.4
433,074 - +0.2
433,074 - -0.6
433,451 + ABZR87_RS02030 0.20 +0.6
433,451 + ABZR87_RS02030 0.20 -0.4
433,451 + ABZR87_RS02030 0.20 +0.2
433,451 + ABZR87_RS02030 0.20 +0.3
433,451 + ABZR87_RS02030 0.20 -0.2
433,451 + ABZR87_RS02030 0.20 +0.7
433,452 - ABZR87_RS02030 0.20 -0.5
433,452 - ABZR87_RS02030 0.20 -2.6
433,452 - ABZR87_RS02030 0.20 -0.3
433,496 + ABZR87_RS02030 0.22 -1.6
433,681 - ABZR87_RS02030 0.31 +0.3
433,715 + ABZR87_RS02030 0.33 -0.0
433,772 + ABZR87_RS02030 0.35 -0.8
433,773 - ABZR87_RS02030 0.35 -1.0
433,773 - ABZR87_RS02030 0.35 -1.9
433,773 - ABZR87_RS02030 0.35 -0.6
433,773 - ABZR87_RS02030 0.35 -0.1
433,773 - ABZR87_RS02030 0.35 -0.1
433,773 - ABZR87_RS02030 0.35 +0.1
433,773 - ABZR87_RS02030 0.35 -0.7
433,784 + ABZR87_RS02030 0.36 +0.3
433,784 + ABZR87_RS02030 0.36 -0.7
433,785 - ABZR87_RS02030 0.36 -0.3
433,785 - ABZR87_RS02030 0.36 -1.3
433,785 - ABZR87_RS02030 0.36 -0.5
433,785 - ABZR87_RS02030 0.36 -0.3
433,785 - ABZR87_RS02030 0.36 +1.3
433,785 - ABZR87_RS02030 0.36 -0.0
433,845 - ABZR87_RS02030 0.39 -2.2
433,845 - ABZR87_RS02030 0.39 -0.5
433,958 + ABZR87_RS02030 0.44 -0.8
433,959 - ABZR87_RS02030 0.44 +0.5
433,959 - ABZR87_RS02030 0.44 -0.6

Or see this region's nucleotide sequence