Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00980 and ABZR87_RS00985 are separated by 12 nucleotides ABZR87_RS00985 and ABZR87_RS00990 are separated by 329 nucleotides ABZR87_RS00990 and ABZR87_RS00995 are separated by 13 nucleotides
ABZR87_RS00980: ABZR87_RS00980 - phospholipase A, at 196,429 to 197,724
_RS00980
ABZR87_RS00985: ABZR87_RS00985 - nucleoside diphosphate kinase regulator, at 197,737 to 198,144
_RS00985
ABZR87_RS00990: ABZR87_RS00990 - thioredoxin family protein, at 198,474 to 198,899
_RS00990
ABZR87_RS00995: ABZR87_RS00995 - nucleotide exchange factor GrpE, at 198,913 to 199,560
_RS00995
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.953 kb on + strand, within ABZR87_RS00980 at 196.954 kb on - strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.217 kb on + strand, within ABZR87_RS00980 at 197.218 kb on - strand, within ABZR87_RS00980 at 197.218 kb on - strand, within ABZR87_RS00980 at 197.225 kb on - strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.245 kb on + strand, within ABZR87_RS00980 at 197.402 kb on - strand, within ABZR87_RS00980 at 197.402 kb on - strand, within ABZR87_RS00980 at 197.402 kb on - strand, within ABZR87_RS00980 at 197.428 kb on + strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.434 kb on + strand, within ABZR87_RS00980 at 197.434 kb on + strand, within ABZR87_RS00980 at 197.434 kb on + strand, within ABZR87_RS00980 at 197.435 kb on - strand, within ABZR87_RS00980 at 197.471 kb on - strand, within ABZR87_RS00980 at 197.501 kb on - strand, within ABZR87_RS00980 at 197.501 kb on - strand, within ABZR87_RS00980 at 197.501 kb on - strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.561 kb on - strand, within ABZR87_RS00980 at 197.561 kb on - strand, within ABZR87_RS00980 at 197.623 kb on + strand at 197.623 kb on + strand at 197.639 kb on - strand at 197.671 kb on + strand at 197.671 kb on + strand at 197.708 kb on - strand at 197.738 kb on + strand at 197.738 kb on + strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.822 kb on + strand, within ABZR87_RS00985 at 197.823 kb on - strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.257 kb on + strand at 198.258 kb on + strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.259 kb on - strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.269 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.603 kb on - strand, within ABZR87_RS00990 at 198.603 kb on - strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 196,953 + ABZR87_RS00980 0.40 -0.3 196,954 - ABZR87_RS00980 0.41 +0.7 197,155 + ABZR87_RS00980 0.56 -1.0 197,155 + ABZR87_RS00980 0.56 -0.3 197,155 + ABZR87_RS00980 0.56 -0.7 197,155 + ABZR87_RS00980 0.56 +0.2 197,155 + ABZR87_RS00980 0.56 +1.0 197,155 + ABZR87_RS00980 0.56 +0.3 197,155 + ABZR87_RS00980 0.56 +0.4 197,155 + ABZR87_RS00980 0.56 +0.3 197,155 + ABZR87_RS00980 0.56 -0.3 197,156 - ABZR87_RS00980 0.56 -0.3 197,156 - ABZR87_RS00980 0.56 +1.0 197,156 - ABZR87_RS00980 0.56 +1.3 197,156 - ABZR87_RS00980 0.56 -0.8 197,156 - ABZR87_RS00980 0.56 -0.4 197,217 + ABZR87_RS00980 0.61 -1.1 197,218 - ABZR87_RS00980 0.61 -0.9 197,218 - ABZR87_RS00980 0.61 -1.7 197,225 - ABZR87_RS00980 0.61 -0.4 197,242 + ABZR87_RS00980 0.63 +0.7 197,242 + ABZR87_RS00980 0.63 -0.3 197,242 + ABZR87_RS00980 0.63 +0.2 197,242 + ABZR87_RS00980 0.63 -0.2 197,242 + ABZR87_RS00980 0.63 -0.2 197,242 + ABZR87_RS00980 0.63 +0.1 197,243 - ABZR87_RS00980 0.63 -0.9 197,243 - ABZR87_RS00980 0.63 -0.3 197,243 - ABZR87_RS00980 0.63 -1.1 197,243 - ABZR87_RS00980 0.63 +0.3 197,243 - ABZR87_RS00980 0.63 +0.5 197,243 - ABZR87_RS00980 0.63 -0.6 197,243 - ABZR87_RS00980 0.63 +0.4 197,245 + ABZR87_RS00980 0.63 +0.9 197,402 - ABZR87_RS00980 0.75 -0.3 197,402 - ABZR87_RS00980 0.75 +0.3 197,402 - ABZR87_RS00980 0.75 -0.2 197,428 + ABZR87_RS00980 0.77 +0.3 197,429 - ABZR87_RS00980 0.77 +0.5 197,429 - ABZR87_RS00980 0.77 +0.7 197,429 - ABZR87_RS00980 0.77 -1.0 197,429 - ABZR87_RS00980 0.77 +1.1 197,434 + ABZR87_RS00980 0.78 +0.4 197,434 + ABZR87_RS00980 0.78 +0.2 197,434 + ABZR87_RS00980 0.78 +0.9 197,435 - ABZR87_RS00980 0.78 -2.3 197,471 - ABZR87_RS00980 0.80 -2.0 197,501 - ABZR87_RS00980 0.83 +0.3 197,501 - ABZR87_RS00980 0.83 -0.5 197,501 - ABZR87_RS00980 0.83 -0.3 197,560 + ABZR87_RS00980 0.87 +0.1 197,560 + ABZR87_RS00980 0.87 -0.1 197,560 + ABZR87_RS00980 0.87 -1.4 197,560 + ABZR87_RS00980 0.87 +0.0 197,560 + ABZR87_RS00980 0.87 -0.8 197,560 + ABZR87_RS00980 0.87 -0.2 197,560 + ABZR87_RS00980 0.87 +0.2 197,560 + ABZR87_RS00980 0.87 -1.6 197,561 - ABZR87_RS00980 0.87 -0.2 197,561 - ABZR87_RS00980 0.87 -0.1 197,623 + -0.0 197,623 + +0.8 197,639 - -0.1 197,671 + +0.8 197,671 + +0.2 197,708 - -1.0 197,738 + -0.2 197,738 + +0.6 197,739 - -0.5 197,739 - +0.3 197,739 - -1.1 197,739 - +0.5 197,739 - +0.9 197,739 - +0.5 197,745 + +0.5 197,745 + +1.2 197,745 + +0.6 197,745 + +0.5 197,745 + -0.0 197,746 - +0.4 197,746 - +0.6 197,746 - -0.7 197,746 - +0.9 197,746 - -0.3 197,746 - +0.4 197,746 - -2.3 197,746 - -0.6 197,822 + ABZR87_RS00985 0.21 +0.8 197,823 - ABZR87_RS00985 0.21 +0.8 197,835 + ABZR87_RS00985 0.24 -0.9 197,835 + ABZR87_RS00985 0.24 +1.6 197,835 + ABZR87_RS00985 0.24 +1.3 197,835 + ABZR87_RS00985 0.24 +0.6 197,835 + ABZR87_RS00985 0.24 +1.2 197,835 + ABZR87_RS00985 0.24 +1.8 197,836 - ABZR87_RS00985 0.24 +0.2 197,836 - ABZR87_RS00985 0.24 +0.4 197,836 - ABZR87_RS00985 0.24 +0.7 197,836 - ABZR87_RS00985 0.24 -0.7 198,122 + +0.0 198,122 + -0.1 198,122 + +0.8 198,122 + -0.1 198,122 + +0.4 198,122 + -0.2 198,122 + +0.5 198,122 + +0.2 198,122 + +1.8 198,123 - +0.4 198,123 - +0.1 198,123 - +1.5 198,123 - -1.1 198,123 - -0.8 198,123 - +0.6 198,123 - -0.5 198,155 + +0.3 198,155 + +0.4 198,155 + +0.3 198,155 + +0.3 198,156 - +0.0 198,156 - -3.0 198,156 - -0.5 198,257 + -0.1 198,258 + +0.7 198,258 + +0.6 198,259 - -0.5 198,259 - -3.0 198,261 + +2.2 198,261 + +0.2 198,261 + -0.1 198,261 + -1.4 198,261 + -1.2 198,261 + -0.3 198,262 - -1.4 198,262 - -2.1 198,262 - -0.5 198,262 - -0.9 198,262 - -1.7 198,262 - -0.5 198,269 - -1.8 198,322 - +1.4 198,322 - -0.1 198,322 - -2.3 198,603 - ABZR87_RS00990 0.30 +1.0 198,603 - ABZR87_RS00990 0.30 -1.4 198,643 + ABZR87_RS00990 0.40 -0.0 198,643 + ABZR87_RS00990 0.40 -0.4 198,643 + ABZR87_RS00990 0.40 +0.6 198,643 + ABZR87_RS00990 0.40 +1.3 198,643 + ABZR87_RS00990 0.40 -1.0 198,644 - ABZR87_RS00990 0.40 -0.7 198,644 - ABZR87_RS00990 0.40 -1.0 198,644 - ABZR87_RS00990 0.40 +0.5 198,914 + -1.2 198,914 + -0.2 198,914 + -1.8 198,914 + +0.5 198,914 + -1.2 198,914 + +0.8 198,914 + +1.8 198,914 + -0.5 198,915 - -1.0 198,915 - -1.1 198,915 - +0.3 198,915 - -0.6 198,915 - +0.3 198,915 - -0.2 198,915 - -0.4 198,915 - +0.1
Or see this region's nucleotide sequence