Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00970 and ABZR87_RS00975 are separated by 135 nucleotides ABZR87_RS00975 and ABZR87_RS00980 are separated by 264 nucleotides
ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076
_RS00970
ABZR87_RS00975: ABZR87_RS00975 - molecular chaperone DnaK, at 194,212 to 196,164
_RS00975
ABZR87_RS00980: ABZR87_RS00980 - phospholipase A, at 196,429 to 197,724
_RS00980
Position (kb) 194
195
196
197 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 193.313 kb on + strand, within ABZR87_RS00970 at 193.313 kb on + strand, within ABZR87_RS00970 at 193.357 kb on - strand, within ABZR87_RS00970 at 194.118 kb on - strand at 194.181 kb on - strand at 194.181 kb on - strand at 194.181 kb on - strand at 194.185 kb on + strand at 194.213 kb on + strand at 194.213 kb on + strand at 194.213 kb on + strand at 194.213 kb on + strand at 194.214 kb on - strand at 194.214 kb on - strand at 194.256 kb on + strand at 194.354 kb on + strand at 194.355 kb on - strand at 195.584 kb on + strand, within ABZR87_RS00975 at 195.731 kb on + strand, within ABZR87_RS00975 at 196.205 kb on - strand at 196.205 kb on - strand at 196.205 kb on - strand at 196.205 kb on - strand at 196.314 kb on - strand at 196.314 kb on - strand at 196.378 kb on + strand at 196.378 kb on + strand at 196.378 kb on + strand at 196.378 kb on + strand at 196.378 kb on + strand at 196.379 kb on - strand at 196.379 kb on - strand at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.597 kb on + strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.598 kb on - strand, within ABZR87_RS00980 at 196.675 kb on - strand, within ABZR87_RS00980 at 196.729 kb on + strand, within ABZR87_RS00980 at 196.729 kb on + strand, within ABZR87_RS00980 at 196.731 kb on + strand, within ABZR87_RS00980 at 196.731 kb on + strand, within ABZR87_RS00980 at 196.731 kb on + strand, within ABZR87_RS00980 at 196.953 kb on + strand, within ABZR87_RS00980 at 196.954 kb on - strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 193,313 + ABZR87_RS00970 0.34 +3.4 193,313 + ABZR87_RS00970 0.34 +2.4 193,357 - ABZR87_RS00970 0.37 -1.0 194,118 - -2.5 194,181 - +0.3 194,181 - -0.8 194,181 - -0.0 194,185 + -0.5 194,213 + +2.9 194,213 + +2.0 194,213 + +1.8 194,213 + +0.2 194,214 - -0.7 194,214 - +0.5 194,256 + +0.6 194,354 + +1.3 194,355 - +1.1 195,584 + ABZR87_RS00975 0.70 +3.4 195,731 + ABZR87_RS00975 0.78 +1.1 196,205 - -0.2 196,205 - +0.6 196,205 - +0.2 196,205 - +0.6 196,314 - +0.2 196,314 - -1.3 196,378 + -1.0 196,378 + -0.4 196,378 + +1.7 196,378 + +0.5 196,378 + -0.2 196,379 - -0.4 196,379 - +0.4 196,597 + ABZR87_RS00980 0.13 +0.4 196,597 + ABZR87_RS00980 0.13 -0.0 196,597 + ABZR87_RS00980 0.13 +0.6 196,597 + ABZR87_RS00980 0.13 +0.4 196,597 + ABZR87_RS00980 0.13 -1.2 196,597 + ABZR87_RS00980 0.13 -0.1 196,597 + ABZR87_RS00980 0.13 -0.0 196,597 + ABZR87_RS00980 0.13 -0.4 196,597 + ABZR87_RS00980 0.13 +0.5 196,597 + ABZR87_RS00980 0.13 +0.2 196,598 - ABZR87_RS00980 0.13 -1.0 196,598 - ABZR87_RS00980 0.13 +0.3 196,598 - ABZR87_RS00980 0.13 -1.3 196,598 - ABZR87_RS00980 0.13 -0.2 196,598 - ABZR87_RS00980 0.13 +1.1 196,598 - ABZR87_RS00980 0.13 +0.1 196,598 - ABZR87_RS00980 0.13 +1.1 196,598 - ABZR87_RS00980 0.13 +0.5 196,598 - ABZR87_RS00980 0.13 -1.5 196,598 - ABZR87_RS00980 0.13 +0.1 196,598 - ABZR87_RS00980 0.13 +0.2 196,675 - ABZR87_RS00980 0.19 -0.8 196,729 + ABZR87_RS00980 0.23 +0.0 196,729 + ABZR87_RS00980 0.23 +0.1 196,731 + ABZR87_RS00980 0.23 +0.4 196,731 + ABZR87_RS00980 0.23 +0.1 196,731 + ABZR87_RS00980 0.23 +0.8 196,953 + ABZR87_RS00980 0.40 -0.3 196,954 - ABZR87_RS00980 0.41 +0.7 197,155 + ABZR87_RS00980 0.56 -1.0 197,155 + ABZR87_RS00980 0.56 -0.3 197,155 + ABZR87_RS00980 0.56 -0.7 197,155 + ABZR87_RS00980 0.56 +0.2 197,155 + ABZR87_RS00980 0.56 +1.0 197,155 + ABZR87_RS00980 0.56 +0.3 197,155 + ABZR87_RS00980 0.56 +0.4 197,155 + ABZR87_RS00980 0.56 +0.3 197,155 + ABZR87_RS00980 0.56 -0.3 197,156 - ABZR87_RS00980 0.56 -0.3 197,156 - ABZR87_RS00980 0.56 +1.0 197,156 - ABZR87_RS00980 0.56 +1.3 197,156 - ABZR87_RS00980 0.56 -0.8 197,156 - ABZR87_RS00980 0.56 -0.4
Or see this region's nucleotide sequence