Experiment: no_plant_rhizosphere sample 1; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00750 and ABZR87_RS00755 are separated by 119 nucleotides ABZR87_RS00755 and ABZR87_RS00760 are separated by 0 nucleotides ABZR87_RS00760 and ABZR87_RS00765 are separated by 3 nucleotides
ABZR87_RS00750: ABZR87_RS00750 - LysR family transcriptional regulator, at 151,154 to 152,047
_RS00750
ABZR87_RS00755: ABZR87_RS00755 - bile acid:sodium symporter family protein, at 152,167 to 153,198
_RS00755
ABZR87_RS00760: ABZR87_RS00760 - GNAT family N-acetyltransferase, at 153,199 to 153,744
_RS00760
ABZR87_RS00765: ABZR87_RS00765 - N-acetylmuramoyl-L-alanine amidase, at 153,748 to 155,271
_RS00765
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.391 kb on - strand, within ABZR87_RS00750 at 151.614 kb on - strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 152.086 kb on - strand at 152.095 kb on - strand at 152.110 kb on + strand at 152.111 kb on - strand at 152.117 kb on + strand at 152.142 kb on + strand at 152.143 kb on - strand at 152.143 kb on - strand at 152.146 kb on + strand at 152.147 kb on - strand at 152.147 kb on - strand at 152.147 kb on - strand at 152.183 kb on + strand at 152.183 kb on + strand at 152.183 kb on + strand at 152.184 kb on - strand at 152.184 kb on - strand at 152.184 kb on - strand at 152.500 kb on + strand, within ABZR87_RS00755 at 152.500 kb on + strand, within ABZR87_RS00755 at 152.500 kb on + strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.863 kb on + strand, within ABZR87_RS00755 at 152.864 kb on - strand, within ABZR87_RS00755 at 153.091 kb on + strand, within ABZR87_RS00755 at 153.091 kb on + strand, within ABZR87_RS00755 at 153.091 kb on + strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.137 kb on - strand at 153.137 kb on - strand at 153.137 kb on - strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.246 kb on - strand at 153.246 kb on - strand at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.324 kb on - strand, within ABZR87_RS00760 at 153.324 kb on - strand, within ABZR87_RS00760 at 153.324 kb on - strand, within ABZR87_RS00760 at 153.353 kb on + strand, within ABZR87_RS00760 at 153.681 kb on + strand, within ABZR87_RS00760 at 154.116 kb on - strand, within ABZR87_RS00765
Per-strain Table
Position Strand Gene LocusTag Fraction no_plant_rhizosphere sample 1; outgrowth in LB remove 151,390 + ABZR87_RS00750 0.26 -0.2 151,390 + ABZR87_RS00750 0.26 -1.1 151,390 + ABZR87_RS00750 0.26 +0.2 151,390 + ABZR87_RS00750 0.26 -1.6 151,391 - ABZR87_RS00750 0.27 +0.4 151,614 - ABZR87_RS00750 0.51 -0.0 151,716 + ABZR87_RS00750 0.63 +0.3 151,716 + ABZR87_RS00750 0.63 -0.3 151,716 + ABZR87_RS00750 0.63 -0.3 151,716 + ABZR87_RS00750 0.63 -0.9 151,716 + ABZR87_RS00750 0.63 +1.3 151,716 + ABZR87_RS00750 0.63 -3.2 151,716 + ABZR87_RS00750 0.63 +0.0 151,717 - ABZR87_RS00750 0.63 -1.4 151,717 - ABZR87_RS00750 0.63 -0.3 151,717 - ABZR87_RS00750 0.63 -0.4 152,086 - -3.1 152,095 - -2.1 152,110 + +0.3 152,111 - +0.7 152,117 + +0.4 152,142 + -0.3 152,143 - +0.3 152,143 - -0.0 152,146 + +0.4 152,147 - -0.3 152,147 - +0.5 152,147 - -0.4 152,183 + -0.5 152,183 + -0.5 152,183 + +0.6 152,184 - -0.7 152,184 - +0.5 152,184 - -2.1 152,500 + ABZR87_RS00755 0.32 +3.4 152,500 + ABZR87_RS00755 0.32 +1.0 152,500 + ABZR87_RS00755 0.32 -0.6 152,501 - ABZR87_RS00755 0.32 +0.0 152,501 - ABZR87_RS00755 0.32 +0.6 152,501 - ABZR87_RS00755 0.32 -0.7 152,863 + ABZR87_RS00755 0.67 -0.7 152,864 - ABZR87_RS00755 0.68 -0.1 153,091 + ABZR87_RS00755 0.90 -1.7 153,091 + ABZR87_RS00755 0.90 -1.0 153,091 + ABZR87_RS00755 0.90 -0.7 153,092 - ABZR87_RS00755 0.90 -0.9 153,092 - ABZR87_RS00755 0.90 -0.1 153,092 - ABZR87_RS00755 0.90 -0.5 153,092 - ABZR87_RS00755 0.90 -1.0 153,137 - +1.4 153,137 - +0.1 153,137 - +1.9 153,245 + +0.3 153,245 + +0.5 153,245 + -0.4 153,245 + -0.5 153,245 + +0.5 153,246 - -1.2 153,246 - +0.0 153,323 + ABZR87_RS00760 0.23 -2.1 153,323 + ABZR87_RS00760 0.23 +0.4 153,323 + ABZR87_RS00760 0.23 +0.1 153,323 + ABZR87_RS00760 0.23 -0.3 153,323 + ABZR87_RS00760 0.23 +0.5 153,323 + ABZR87_RS00760 0.23 -0.0 153,324 - ABZR87_RS00760 0.23 +0.0 153,324 - ABZR87_RS00760 0.23 -1.6 153,324 - ABZR87_RS00760 0.23 +0.9 153,353 + ABZR87_RS00760 0.28 +1.4 153,681 + ABZR87_RS00760 0.88 -0.2 154,116 - ABZR87_RS00765 0.24 -1.9
Or see this region's nucleotide sequence