Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0944

Experiment: Mannan from Saccharomyces cerevisiae (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0943 and BT0944 are separated by 196 nucleotidesBT0944 and BT0945 are separated by 12 nucleotides BT0943: BT0943 - penicillin-binding protein 2B (PBP-2B) (NCBI ptt file), at 1,152,317 to 1,153,219 BT0943 BT0944: BT0944 - hypothetical protein (NCBI ptt file), at 1,153,416 to 1,153,757 BT0944 BT0945: BT0945 - hypothetical protein (NCBI ptt file), at 1,153,770 to 1,154,243 BT0945 Position (kb) 1153 1154Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1152.421 kb on + strand, within BT0943at 1152.422 kb on - strand, within BT0943at 1152.431 kb on - strand, within BT0943at 1152.437 kb on - strand, within BT0943at 1152.471 kb on + strand, within BT0943at 1152.471 kb on - strand, within BT0943at 1152.472 kb on - strand, within BT0943at 1152.485 kb on - strand, within BT0943at 1152.499 kb on + strand, within BT0943at 1152.511 kb on + strand, within BT0943at 1152.521 kb on + strand, within BT0943at 1152.521 kb on + strand, within BT0943at 1152.533 kb on + strand, within BT0943at 1152.604 kb on + strand, within BT0943at 1152.622 kb on + strand, within BT0943at 1152.644 kb on + strand, within BT0943at 1152.645 kb on - strand, within BT0943at 1152.703 kb on + strand, within BT0943at 1152.714 kb on - strand, within BT0943at 1152.737 kb on + strand, within BT0943at 1152.755 kb on - strand, within BT0943at 1152.761 kb on + strand, within BT0943at 1152.776 kb on - strand, within BT0943at 1152.828 kb on - strand, within BT0943at 1152.841 kb on + strand, within BT0943at 1152.851 kb on - strand, within BT0943at 1152.862 kb on + strand, within BT0943at 1152.862 kb on + strand, within BT0943at 1152.866 kb on - strand, within BT0943at 1152.872 kb on + strand, within BT0943at 1152.916 kb on + strand, within BT0943at 1152.917 kb on - strand, within BT0943at 1152.917 kb on - strand, within BT0943at 1152.989 kb on - strand, within BT0943at 1153.033 kb on + strand, within BT0943at 1153.130 kb on + strandat 1153.177 kb on + strandat 1153.223 kb on + strandat 1153.298 kb on - strandat 1153.315 kb on + strandat 1153.368 kb on - strandat 1153.380 kb on - strandat 1153.433 kb on + strandat 1153.526 kb on + strand, within BT0944at 1153.527 kb on - strand, within BT0944at 1153.603 kb on + strand, within BT0944at 1153.681 kb on + strand, within BT0944at 1153.745 kb on + strandat 1153.910 kb on + strand, within BT0945at 1153.931 kb on + strand, within BT0945at 1153.933 kb on + strand, within BT0945at 1153.953 kb on + strand, within BT0945at 1154.012 kb on + strand, within BT0945at 1154.026 kb on - strand, within BT0945at 1154.067 kb on - strand, within BT0945at 1154.097 kb on - strand, within BT0945at 1154.291 kb on + strandat 1154.324 kb on + strandat 1154.325 kb on - strandat 1154.326 kb on + strandat 1154.327 kb on - strandat 1154.378 kb on - strandat 1154.410 kb on + strandat 1154.411 kb on - strandat 1154.439 kb on + strandat 1154.439 kb on + strandat 1154.470 kb on + strandat 1154.562 kb on - strandat 1154.564 kb on + strandat 1154.622 kb on + strandat 1154.659 kb on + strandat 1154.662 kb on - strandat 1154.672 kb on + strandat 1154.673 kb on - strandat 1154.675 kb on - strandat 1154.675 kb on - strandat 1154.683 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannan from Saccharomyces cerevisiae (C)
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1,152,421 + BT0943 0.12 -1.8
1,152,422 - BT0943 0.12 -1.5
1,152,431 - BT0943 0.13 +2.2
1,152,437 - BT0943 0.13 -3.2
1,152,471 + BT0943 0.17 +0.5
1,152,471 - BT0943 0.17 -0.4
1,152,472 - BT0943 0.17 -1.6
1,152,485 - BT0943 0.19 +0.5
1,152,499 + BT0943 0.20 -0.4
1,152,511 + BT0943 0.21 +0.9
1,152,521 + BT0943 0.23 -0.4
1,152,521 + BT0943 0.23 -0.4
1,152,533 + BT0943 0.24 +0.5
1,152,604 + BT0943 0.32 -1.0
1,152,622 + BT0943 0.34 +0.2
1,152,644 + BT0943 0.36 -1.7
1,152,645 - BT0943 0.36 -0.2
1,152,703 + BT0943 0.43 -0.1
1,152,714 - BT0943 0.44 -2.0
1,152,737 + BT0943 0.47 -1.9
1,152,755 - BT0943 0.49 +0.2
1,152,761 + BT0943 0.49 -2.4
1,152,776 - BT0943 0.51 +0.5
1,152,828 - BT0943 0.57 +1.5
1,152,841 + BT0943 0.58 -3.6
1,152,851 - BT0943 0.59 -2.1
1,152,862 + BT0943 0.60 +1.1
1,152,862 + BT0943 0.60 -1.6
1,152,866 - BT0943 0.61 -0.1
1,152,872 + BT0943 0.61 +0.1
1,152,916 + BT0943 0.66 -1.4
1,152,917 - BT0943 0.66 -0.8
1,152,917 - BT0943 0.66 +0.2
1,152,989 - BT0943 0.74 -2.4
1,153,033 + BT0943 0.79 -1.8
1,153,130 + -1.8
1,153,177 + -3.5
1,153,223 + -2.6
1,153,298 - -1.6
1,153,315 + +0.4
1,153,368 - +0.2
1,153,380 - -2.1
1,153,433 + -4.1
1,153,526 + BT0944 0.32 -2.1
1,153,527 - BT0944 0.32 -1.9
1,153,603 + BT0944 0.55 -1.6
1,153,681 + BT0944 0.77 -2.0
1,153,745 + -2.6
1,153,910 + BT0945 0.30 -2.4
1,153,931 + BT0945 0.34 -1.6
1,153,933 + BT0945 0.34 +0.6
1,153,953 + BT0945 0.39 -0.1
1,154,012 + BT0945 0.51 +0.2
1,154,026 - BT0945 0.54 -1.6
1,154,067 - BT0945 0.63 +0.1
1,154,097 - BT0945 0.69 -2.2
1,154,291 + -1.1
1,154,324 + -0.6
1,154,325 - -1.5
1,154,326 + -1.6
1,154,327 - +0.7
1,154,378 - -1.6
1,154,410 + +0.5
1,154,411 - -2.2
1,154,439 + +1.0
1,154,439 + -1.5
1,154,470 + -2.4
1,154,562 - -2.4
1,154,564 + +0.2
1,154,622 + -3.0
1,154,659 + -1.7
1,154,662 - +0.6
1,154,672 + -0.8
1,154,673 - +0.5
1,154,675 - -2.4
1,154,675 - +0.4
1,154,683 - -1.8

Or see this region's nucleotide sequence