Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1095

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,111,903	-				-1.4
1,111,905	+				+0.9
1,111,913	-				-2.4
1,111,915	+				+1.7
1,111,915	+				+0.2
1,111,923	-				-0.4
1,111,923	-				+1.4
1,111,923	-				-0.2
1,111,945	-				+0.1
1,111,969	+				+1.1
1,111,969	+				+1.6
1,111,969	+				-0.1
1,111,970	+				+2.3
1,111,970	+				+1.3
1,111,970	-				+0.6
1,111,977	-				+3.9
1,111,977	-				-1.0
1,111,978	-				+0.6
1,111,978	-				-0.8
1,111,978	-				-1.4
1,111,980	-		Synpcc7942_1094	0.10	-0.4
1,111,985	-		Synpcc7942_1094	0.11	+2.6
1,111,990	-		Synpcc7942_1094	0.12	+1.3
1,112,016	+		Synpcc7942_1094	0.16	-2.4
1,112,018	+		Synpcc7942_1094	0.16	+0.7
1,112,026	-		Synpcc7942_1094	0.17	-0.3
1,112,026	-		Synpcc7942_1094	0.17	+1.6
1,112,026	-		Synpcc7942_1094	0.17	-1.0
1,112,039	-		Synpcc7942_1094	0.20	-1.7
1,112,047	+		Synpcc7942_1094	0.21	-0.7
1,112,047	-		Synpcc7942_1094	0.21	+0.3
1,112,052	+		Synpcc7942_1094	0.22	+0.2
1,112,062	+		Synpcc7942_1094	0.23	+1.3
1,112,071	-		Synpcc7942_1094	0.25	+0.8
1,112,071	-		Synpcc7942_1094	0.25	-0.5
1,112,078	+		Synpcc7942_1094	0.26	+0.9
1,112,086	-		Synpcc7942_1094	0.27	-1.7
1,112,108	+				+0.2
1,112,108	+		Synpcc7942_1094	0.31	+1.0
1,112,108	+		Synpcc7942_1094	0.31	+1.2
1,112,108	+		Synpcc7942_1094	0.31	+0.2
1,112,108	+		Synpcc7942_1094	0.31	-3.0
1,112,111	-		Synpcc7942_1094	0.31	+0.9
1,112,116	-		Synpcc7942_1094	0.32	+1.6
1,112,129	+		Synpcc7942_1094	0.34	+2.8
1,112,136	+		Synpcc7942_1094	0.35	-1.4
1,112,137	-		Synpcc7942_1094	0.35	+1.5
1,112,141	+		Synpcc7942_1094	0.36	+1.8
1,112,175	+		Synpcc7942_1094	0.42	+1.6
1,112,183	+		Synpcc7942_1094	0.43	+1.3
1,112,183	+		Synpcc7942_1094	0.43	+0.2
1,112,228	+		Synpcc7942_1094	0.50	-0.2
1,112,228	+		Synpcc7942_1094	0.50	-0.4
1,112,233	+		Synpcc7942_1094	0.51	-0.6
1,112,238	+		Synpcc7942_1094	0.52	+1.7
1,112,269	+		Synpcc7942_1094	0.57	-0.7
1,112,284	+		Synpcc7942_1094	0.59	+1.2
1,112,284	+		Synpcc7942_1094	0.59	+0.5
1,112,286	+		Synpcc7942_1094	0.60	+1.2
1,112,286	-		Synpcc7942_1094	0.60	+1.8
1,112,286	-		Synpcc7942_1094	0.60	+1.8
1,112,294	-		Synpcc7942_1094	0.61	-1.0
1,112,305	-		Synpcc7942_1094	0.63	+1.8
1,112,314	-		Synpcc7942_1094	0.64	+1.4
1,112,361	+		Synpcc7942_1094	0.72	+0.2
1,112,361	+		Synpcc7942_1094	0.72	+1.0
1,112,361	+		Synpcc7942_1094	0.72	+1.4
1,112,361	+		Synpcc7942_1094	0.72	-1.4
1,112,369	+		Synpcc7942_1094	0.73	-0.8
1,112,369	+		Synpcc7942_1094	0.73	+1.7
1,112,369	-		Synpcc7942_1094	0.73	+0.9
1,112,377	-		Synpcc7942_1094	0.74	+0.9
1,112,377	-		Synpcc7942_1094	0.74	-0.2
1,112,377	-		Synpcc7942_1094	0.74	+1.6
1,112,377	-		Synpcc7942_1094	0.74	+0.7
1,112,414	+		Synpcc7942_1094	0.80	+0.2
1,112,440	-		Synpcc7942_1094	0.84	+0.3
1,112,446	+		Synpcc7942_1094	0.85	-1.4
1,112,455	-		Synpcc7942_1094	0.87	-0.1
1,112,471	-		Synpcc7942_1094	0.89	+1.3
1,112,515	+				+1.2
1,112,543	-				+1.3
1,112,565	+				-1.8
1,112,571	-				+0.6
1,112,577	-				+0.5
1,112,582	-				+0.8
1,112,587	+				+0.3
1,112,590	-				-2.4
1,112,643	+				+1.2
1,112,652	+				+0.4
1,112,652	+				-1.9
1,112,654	+				-0.4
1,112,659	+				+2.1
1,112,670	+				+0.3
1,112,676	+				-1.4
1,112,691	+				+0.1
1,112,691	+				+1.9
1,112,691	+				-0.4
1,112,699	-				+2.4
1,112,699	-				+1.1
1,112,702	-				-1.0
1,112,708	-				-0.2
1,112,715	+				+1.2
1,112,718	+				-0.4
1,112,718	+				-0.2
1,112,737	+				+0.7
1,112,737	+				-1.2
1,112,745	-				-1.4
1,112,748	+				+1.8
1,112,756	-				-0.4
1,112,756	-				+0.7
1,112,756	-				+1.9
1,112,778	+				+0.4
1,112,802	+				+0.9
1,112,829	-				+1.1
1,112,834	-				+1.8
1,112,834	-				+1.0
1,112,838	+				-0.1
1,112,850	+				-0.2
1,112,860	+				+2.0
1,112,860	+				+1.4
1,112,860	+				-2.4
1,112,860	+				+0.6
1,112,860	+				+0.3
1,112,860	+				+1.4
1,112,860	+				+0.9
1,112,866	+				-0.4
1,112,868	-				+0.6
1,112,868	-				-0.2
1,112,884	-				+1.4
1,112,894	-				-1.0
1,112,975	-		Synpcc7942_1095	0.29	+1.9
1,113,034	+		Synpcc7942_1095	0.42	+0.2
1,113,094	+		Synpcc7942_1095	0.57	-1.4
1,113,104	+		Synpcc7942_1095	0.59	-1.2
1,113,126	+		Synpcc7942_1095	0.64	-1.4
1,113,126	-		Synpcc7942_1095	0.64	-3.7
1,113,127	+		Synpcc7942_1095	0.64	-1.4
1,113,179	-		Synpcc7942_1095	0.77	+2.2
1,113,241	+				-0.4
1,113,241	+				+1.9
1,113,249	-				+0.5
1,113,249	-				-1.4
1,113,302	+				+0.4
1,113,312	-				+1.0
1,113,334	+				+0.0
1,113,334	+				+1.7
1,113,334	+				+1.2
1,113,334	+				-1.0
1,113,334	+				+0.9
1,113,342	-				-1.6
1,113,342	-				+0.6
1,113,342	-				+0.9
1,113,342	-				-0.9