Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1088

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
1,104,192	-				+0.2
1,104,229	-				-3.0
1,104,229	-				-3.4
1,104,255	-	petE	Synpcc7942_1088	0.16	-2.4
1,104,292	+	petE	Synpcc7942_1088	0.26	-1.2
1,104,300	-	petE	Synpcc7942_1088	0.28	-1.4
1,104,330	-	petE	Synpcc7942_1088	0.36	-0.5
1,104,378	-				+0.2
1,104,421	+	petE	Synpcc7942_1088	0.60	-0.7
1,104,429	-	petE	Synpcc7942_1088	0.62	+0.2
1,104,504	+	petE	Synpcc7942_1088	0.82	-1.1
1,104,512	-	petE	Synpcc7942_1088	0.84	-2.0
1,104,536	+				-1.4
1,104,583	+				-0.1
1,104,606	+				+1.2
1,104,612	+				-1.4
1,104,612	-				+0.9
1,104,617	+				-3.0
1,104,617	-				-0.8
1,104,675	+				+0.0
1,104,683	-				+1.0
1,104,735	+				-2.0
1,104,834	+				+2.2
1,104,847	-				+0.9
1,104,867	+				-2.4
1,104,911	-				+0.9
1,104,935	-				+1.3
1,105,047	-	clpB	Synpcc7942_1089	0.13	-0.3
1,105,072	-	clpB	Synpcc7942_1089	0.14	-0.4
1,105,084	-	clpB	Synpcc7942_1089	0.14	-0.4
1,105,179	+	clpB	Synpcc7942_1089	0.18	+1.2
1,105,363	+	clpB	Synpcc7942_1089	0.25	-0.4
1,105,370	-	clpB	Synpcc7942_1089	0.25	-2.4
1,105,403	-	clpB	Synpcc7942_1089	0.26	+1.2
1,105,516	+	clpB	Synpcc7942_1089	0.30	+0.2
1,105,569	+	clpB	Synpcc7942_1089	0.32	-1.3