Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0894

Experiment: nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpsbAIII and aroK are separated by 561 nucleotidesaroK and Synpcc7942_0895 are separated by 67 nucleotides Synpcc7942_0893: psbAIII - photosystem q(b) protein, at 903,201 to 904,283 psbAIII Synpcc7942_0894: aroK - shikimate kinase, at 904,845 to 905,417 aroK Synpcc7942_0895: Synpcc7942_0895 - hypothetical protein, at 905,485 to 906,657 _0895 Position (kb) 904 905 906Strain fitness (log2 ratio) -2 -1 0 1 2at 904.262 kb on - strandat 904.304 kb on + strandat 904.335 kb on - strandat 904.347 kb on + strandat 904.373 kb on + strandat 904.397 kb on + strandat 904.414 kb on - strandat 904.415 kb on - strandat 904.427 kb on - strandat 904.438 kb on + strandat 904.452 kb on + strandat 904.452 kb on + strandat 904.452 kb on + strandat 904.452 kb on + strandat 904.514 kb on + strandat 904.515 kb on + strandat 904.523 kb on - strandat 904.541 kb on + strandat 904.541 kb on + strandat 904.571 kb on + strandat 904.579 kb on - strandat 904.579 kb on - strandat 904.579 kb on - strandat 904.594 kb on + strandat 904.602 kb on - strandat 904.602 kb on - strandat 904.680 kb on - strandat 904.744 kb on - strandat 904.798 kb on + strandat 904.803 kb on + strandat 904.803 kb on + strandat 905.457 kb on + strandat 905.467 kb on + strandat 905.467 kb on + strandat 905.467 kb on + strandat 905.467 kb on + strandat 905.467 kb on + strandat 905.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 5 mM
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904,262 - +0.1
904,304 + +1.5
904,335 - -0.9
904,347 + -0.6
904,373 + -1.5
904,397 + +1.6
904,414 - +1.1
904,415 - +1.9
904,427 - -0.5
904,438 + +2.1
904,452 + +1.5
904,452 + +1.1
904,452 + +0.4
904,452 + -1.5
904,514 + +1.4
904,515 + +0.5
904,523 - +1.5
904,541 + +0.6
904,541 + +1.6
904,571 + +1.1
904,579 - +1.1
904,579 - +0.5
904,579 - +1.2
904,594 + -0.2
904,602 - +1.0
904,602 - +1.1
904,680 - +1.7
904,744 - -0.5
904,798 + +1.1
904,803 + +0.8
904,803 + -1.0
905,457 + -1.6
905,467 + -2.5
905,467 + +1.0
905,467 + -0.9
905,467 + -1.3
905,467 + +1.4
905,467 + +1.2

Or see this region's nucleotide sequence