Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0705 and cobL are separated by 6 nucleotides cobL and cad overlap by 20 nucleotides cad and Synpcc7942_0708 are separated by 66 nucleotides
Synpcc7942_0705: Synpcc7942_0705 - hypothetical protein, at 695,935 to 696,570
_0705
Synpcc7942_0706: cobL - precorrin-6B methylase, at 696,577 to 697,191
cobL
Synpcc7942_0707: cad - arginine decarboxylase, at 697,172 to 698,641
cad
Synpcc7942_0708: Synpcc7942_0708 - hypothetical protein, at 698,708 to 700,459
_0708
Position (kb) 697
698
699 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 696.209 kb on - strand, within Synpcc7942_0705 at 696.213 kb on + strand, within Synpcc7942_0705 at 696.301 kb on - strand, within Synpcc7942_0705 at 696.371 kb on - strand, within Synpcc7942_0705 at 696.387 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.397 kb on + strand, within Synpcc7942_0705 at 696.403 kb on - strand, within Synpcc7942_0705 at 696.464 kb on + strand, within Synpcc7942_0705 at 696.464 kb on - strand, within Synpcc7942_0705 at 696.466 kb on + strand, within Synpcc7942_0705 at 696.474 kb on - strand, within Synpcc7942_0705 at 696.474 kb on - strand at 696.474 kb on - strand, within Synpcc7942_0705 at 696.719 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.722 kb on + strand, within cobL at 696.724 kb on + strand, within cobL at 696.748 kb on + strand, within cobL at 696.756 kb on - strand, within cobL at 696.756 kb on - strand, within cobL at 696.770 kb on + strand, within cobL at 696.799 kb on - strand, within cobL at 696.799 kb on - strand, within cobL at 696.837 kb on + strand, within cobL at 696.845 kb on - strand, within cobL at 696.866 kb on - strand, within cobL at 696.888 kb on - strand, within cobL at 696.896 kb on + strand, within cobL at 696.923 kb on - strand, within cobL at 696.926 kb on + strand, within cobL at 696.930 kb on + strand, within cobL at 696.955 kb on - strand, within cobL at 696.983 kb on + strand, within cobL at 696.983 kb on + strand, within cobL at 697.040 kb on + strand, within cobL at 697.040 kb on - strand, within cobL at 697.055 kb on - strand, within cobL at 697.135 kb on - strand at 697.144 kb on + strand at 697.154 kb on + strand at 697.159 kb on + strand at 697.162 kb on - strand at 697.162 kb on - strand at 697.178 kb on - strand at 697.180 kb on + strand at 697.180 kb on + strand at 697.183 kb on - strand at 697.187 kb on + strand at 697.188 kb on - strand at 697.198 kb on + strand at 697.205 kb on + strand at 697.205 kb on + strand at 697.213 kb on - strand at 697.226 kb on + strand at 697.349 kb on + strand at 697.395 kb on - strand, within cad at 697.432 kb on + strand, within cad at 697.500 kb on - strand, within cad at 697.502 kb on - strand, within cad at 697.517 kb on + strand, within cad at 697.519 kb on - strand, within cad at 697.529 kb on - strand, within cad at 697.583 kb on - strand, within cad at 697.678 kb on + strand, within cad at 697.720 kb on + strand, within cad at 697.744 kb on - strand, within cad at 697.828 kb on + strand, within cad at 697.878 kb on - strand, within cad at 697.909 kb on + strand, within cad at 697.914 kb on + strand, within cad at 697.922 kb on - strand, within cad at 697.945 kb on - strand, within cad at 698.042 kb on + strand, within cad at 698.124 kb on + strand, within cad at 698.251 kb on - strand, within cad at 698.412 kb on + strand, within cad at 698.438 kb on - strand, within cad at 698.442 kb on + strand, within cad at 698.530 kb on - strand at 698.531 kb on - strand at 698.599 kb on + strand at 698.645 kb on + strand at 698.645 kb on + strand at 698.715 kb on + strand at 698.722 kb on + strand at 698.762 kb on + strand at 698.762 kb on + strand at 698.786 kb on - strand at 698.838 kb on + strand at 698.876 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.878 kb on + strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand at 698.886 kb on - strand, within Synpcc7942_0708 at 698.886 kb on - strand, within Synpcc7942_0708 at 698.889 kb on + strand, within Synpcc7942_0708 at 698.911 kb on - strand, within Synpcc7942_0708 at 698.919 kb on - strand, within Synpcc7942_0708 at 698.920 kb on + strand, within Synpcc7942_0708 at 698.925 kb on + strand, within Synpcc7942_0708 at 698.955 kb on + strand, within Synpcc7942_0708 at 698.956 kb on + strand, within Synpcc7942_0708 at 698.969 kb on - strand, within Synpcc7942_0708 at 698.989 kb on - strand, within Synpcc7942_0708 at 699.008 kb on - strand, within Synpcc7942_0708 at 699.127 kb on - strand, within Synpcc7942_0708 at 699.149 kb on - strand, within Synpcc7942_0708 at 699.172 kb on - strand, within Synpcc7942_0708 at 699.183 kb on - strand, within Synpcc7942_0708 at 699.229 kb on - strand, within Synpcc7942_0708 at 699.236 kb on - strand, within Synpcc7942_0708 at 699.514 kb on - strand, within Synpcc7942_0708 at 699.635 kb on + strand, within Synpcc7942_0708
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 696,209 - Synpcc7942_0705 0.43 +0.9 696,213 + Synpcc7942_0705 0.44 +0.2 696,301 - Synpcc7942_0705 0.58 +2.3 696,371 - Synpcc7942_0705 0.69 +1.3 696,387 + Synpcc7942_0705 0.71 +0.1 696,397 + Synpcc7942_0705 0.73 +1.2 696,397 + Synpcc7942_0705 0.73 +1.3 696,403 - Synpcc7942_0705 0.74 +0.6 696,464 + Synpcc7942_0705 0.83 -0.6 696,464 - Synpcc7942_0705 0.83 +1.1 696,466 + Synpcc7942_0705 0.83 -0.9 696,474 - Synpcc7942_0705 0.85 +0.6 696,474 - -0.1 696,474 - Synpcc7942_0705 0.85 +0.7 696,719 + cobL Synpcc7942_0706 0.23 -0.4 696,722 + cobL Synpcc7942_0706 0.24 +1.8 696,722 + cobL Synpcc7942_0706 0.24 +1.5 696,724 + cobL Synpcc7942_0706 0.24 -1.4 696,748 + cobL Synpcc7942_0706 0.28 -0.1 696,756 - cobL Synpcc7942_0706 0.29 -1.8 696,756 - cobL Synpcc7942_0706 0.29 -0.4 696,770 + cobL Synpcc7942_0706 0.31 +0.3 696,799 - cobL Synpcc7942_0706 0.36 +1.2 696,799 - cobL Synpcc7942_0706 0.36 -1.0 696,837 + cobL Synpcc7942_0706 0.42 +1.5 696,845 - cobL Synpcc7942_0706 0.44 +0.2 696,866 - cobL Synpcc7942_0706 0.47 -0.3 696,888 - cobL Synpcc7942_0706 0.51 -0.4 696,896 + cobL Synpcc7942_0706 0.52 +0.8 696,923 - cobL Synpcc7942_0706 0.56 +0.1 696,926 + cobL Synpcc7942_0706 0.57 -0.9 696,930 + cobL Synpcc7942_0706 0.57 -0.4 696,955 - cobL Synpcc7942_0706 0.61 +1.5 696,983 + cobL Synpcc7942_0706 0.66 +0.2 696,983 + cobL Synpcc7942_0706 0.66 +0.6 697,040 + cobL Synpcc7942_0706 0.75 -0.6 697,040 - cobL Synpcc7942_0706 0.75 +0.9 697,055 - cobL Synpcc7942_0706 0.78 +0.5 697,135 - +0.6 697,144 + -0.4 697,154 + -0.4 697,159 + +0.2 697,162 - -1.0 697,162 - +2.1 697,178 - -0.3 697,180 + -0.6 697,180 + +1.1 697,183 - -1.4 697,187 + +1.1 697,188 - +0.3 697,198 + +2.3 697,205 + +1.4 697,205 + -2.4 697,213 - -2.0 697,226 + -1.8 697,349 + -0.4 697,395 - cad Synpcc7942_0707 0.15 -2.4 697,432 + cad Synpcc7942_0707 0.18 -2.4 697,500 - cad Synpcc7942_0707 0.22 -1.7 697,502 - cad Synpcc7942_0707 0.22 -1.4 697,517 + cad Synpcc7942_0707 0.23 -1.4 697,519 - cad Synpcc7942_0707 0.24 -4.6 697,529 - cad Synpcc7942_0707 0.24 -2.0 697,583 - cad Synpcc7942_0707 0.28 -2.4 697,678 + cad Synpcc7942_0707 0.34 -2.4 697,720 + cad Synpcc7942_0707 0.37 -4.6 697,744 - cad Synpcc7942_0707 0.39 -3.4 697,828 + cad Synpcc7942_0707 0.45 -3.4 697,878 - cad Synpcc7942_0707 0.48 -2.8 697,909 + cad Synpcc7942_0707 0.50 -3.0 697,914 + cad Synpcc7942_0707 0.50 -1.0 697,922 - cad Synpcc7942_0707 0.51 -0.8 697,945 - cad Synpcc7942_0707 0.53 -1.4 698,042 + cad Synpcc7942_0707 0.59 -4.0 698,124 + cad Synpcc7942_0707 0.65 -2.0 698,251 - cad Synpcc7942_0707 0.73 -2.4 698,412 + cad Synpcc7942_0707 0.84 -4.0 698,438 - cad Synpcc7942_0707 0.86 +0.2 698,442 + cad Synpcc7942_0707 0.86 -3.0 698,530 - -3.7 698,531 - -3.0 698,599 + -3.7 698,645 + +0.6 698,645 + -0.4 698,715 + +0.0 698,722 + +0.1 698,762 + +1.3 698,762 + +0.6 698,786 - -0.4 698,838 + -1.4 698,876 + +0.0 698,878 + +0.6 698,878 + -1.4 698,878 + +0.8 698,878 + -0.1 698,878 + +0.2 698,878 + +0.2 698,886 - Synpcc7942_0708 0.10 +0.1 698,886 - -1.4 698,886 - Synpcc7942_0708 0.10 +2.2 698,886 - Synpcc7942_0708 0.10 -0.7 698,889 + Synpcc7942_0708 0.10 +0.6 698,911 - Synpcc7942_0708 0.12 +0.8 698,919 - Synpcc7942_0708 0.12 -1.0 698,920 + Synpcc7942_0708 0.12 +1.9 698,925 + Synpcc7942_0708 0.12 -0.4 698,955 + Synpcc7942_0708 0.14 -0.4 698,956 + Synpcc7942_0708 0.14 +0.4 698,969 - Synpcc7942_0708 0.15 -1.4 698,989 - Synpcc7942_0708 0.16 +0.4 699,008 - Synpcc7942_0708 0.17 +1.8 699,127 - Synpcc7942_0708 0.24 +0.4 699,149 - Synpcc7942_0708 0.25 -0.3 699,172 - Synpcc7942_0708 0.26 +1.4 699,183 - Synpcc7942_0708 0.27 -3.0 699,229 - Synpcc7942_0708 0.30 +0.6 699,236 - Synpcc7942_0708 0.30 -0.5 699,514 - Synpcc7942_0708 0.46 +0.3 699,635 + Synpcc7942_0708 0.53 +1.5
Or see this region's nucleotide sequence