Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0622 and trxB are separated by 59 nucleotides trxB and ldpA are separated by 9 nucleotides
Synpcc7942_0622: Synpcc7942_0622 - ATPase, at 611,915 to 613,912
_0622
Synpcc7942_0623: trxB - thioredoxin reductase, at 613,972 to 615,351
trxB
Synpcc7942_0624: ldpA - light dependent period, at 615,361 to 616,419
ldpA
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 613.218 kb on + strand, within Synpcc7942_0622 at 613.223 kb on - strand, within Synpcc7942_0622 at 613.241 kb on - strand, within Synpcc7942_0622 at 613.248 kb on - strand, within Synpcc7942_0622 at 613.291 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.467 kb on - strand, within Synpcc7942_0622 at 613.490 kb on - strand, within Synpcc7942_0622 at 613.519 kb on + strand, within Synpcc7942_0622 at 613.524 kb on + strand, within Synpcc7942_0622 at 613.527 kb on + strand, within Synpcc7942_0622 at 613.528 kb on - strand, within Synpcc7942_0622 at 613.626 kb on + strand, within Synpcc7942_0622 at 613.642 kb on - strand, within Synpcc7942_0622 at 613.770 kb on - strand at 613.811 kb on - strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.815 kb on + strand at 613.823 kb on - strand at 613.866 kb on - strand at 613.894 kb on + strand at 613.907 kb on + strand at 613.916 kb on + strand at 613.932 kb on - strand at 614.041 kb on + strand at 614.042 kb on - strand at 614.067 kb on - strand at 614.067 kb on - strand at 614.106 kb on + strand at 614.125 kb on - strand, within trxB at 614.142 kb on + strand, within trxB at 614.159 kb on - strand, within trxB at 614.170 kb on - strand, within trxB at 614.180 kb on - strand, within trxB at 614.187 kb on + strand, within trxB at 614.207 kb on + strand, within trxB at 614.214 kb on + strand, within trxB at 614.337 kb on + strand, within trxB at 614.394 kb on + strand at 614.606 kb on - strand, within trxB at 614.610 kb on + strand, within trxB at 614.622 kb on + strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.630 kb on - strand, within trxB at 614.780 kb on - strand, within trxB at 614.821 kb on + strand, within trxB at 614.899 kb on - strand, within trxB at 614.966 kb on - strand, within trxB at 615.004 kb on + strand, within trxB at 615.034 kb on - strand, within trxB at 615.044 kb on - strand, within trxB at 615.046 kb on - strand, within trxB at 615.048 kb on + strand, within trxB at 615.048 kb on + strand, within trxB at 615.095 kb on - strand, within trxB at 615.097 kb on + strand, within trxB at 615.130 kb on - strand, within trxB at 615.166 kb on + strand, within trxB at 615.174 kb on - strand, within trxB at 615.174 kb on - strand, within trxB at 615.242 kb on + strand at 615.261 kb on - strand at 615.264 kb on + strand at 615.264 kb on + strand at 615.344 kb on + strand at 615.351 kb on + strand at 615.353 kb on + strand at 615.353 kb on + strand at 615.386 kb on + strand at 615.396 kb on - strand at 615.404 kb on + strand at 615.467 kb on + strand, within ldpA at 615.467 kb on + strand, within ldpA at 615.474 kb on - strand, within ldpA at 615.475 kb on - strand, within ldpA at 615.519 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.593 kb on + strand, within ldpA at 615.658 kb on - strand, within ldpA at 615.662 kb on + strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.670 kb on - strand, within ldpA at 615.751 kb on + strand, within ldpA at 615.786 kb on + strand, within ldpA at 615.902 kb on + strand, within ldpA at 615.975 kb on + strand, within ldpA at 615.983 kb on - strand, within ldpA at 616.075 kb on - strand, within ldpA at 616.089 kb on - strand, within ldpA at 616.093 kb on + strand, within ldpA at 616.195 kb on + strand, within ldpA at 616.321 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 613,218 + Synpcc7942_0622 0.65 -3.0 613,223 - Synpcc7942_0622 0.65 +1.2 613,241 - Synpcc7942_0622 0.66 -4.2 613,248 - Synpcc7942_0622 0.67 -3.0 613,291 - Synpcc7942_0622 0.69 -2.4 613,467 - Synpcc7942_0622 0.78 -1.4 613,467 - Synpcc7942_0622 0.78 -2.4 613,490 - Synpcc7942_0622 0.79 -3.0 613,519 + Synpcc7942_0622 0.80 -2.4 613,524 + Synpcc7942_0622 0.81 -3.7 613,527 + Synpcc7942_0622 0.81 -3.7 613,528 - Synpcc7942_0622 0.81 -0.1 613,626 + Synpcc7942_0622 0.86 -4.9 613,642 - Synpcc7942_0622 0.86 +0.7 613,770 - -2.0 613,811 - -0.0 613,815 + -1.4 613,815 + -3.6 613,815 + -0.7 613,823 - -3.0 613,866 - -2.0 613,894 + +0.3 613,907 + +2.4 613,916 + +0.2 613,932 - +0.3 614,041 + -0.4 614,042 - +1.2 614,067 - -1.4 614,067 - -1.2 614,106 + -2.4 614,125 - trxB Synpcc7942_0623 0.11 -0.8 614,142 + trxB Synpcc7942_0623 0.12 +0.6 614,159 - trxB Synpcc7942_0623 0.14 -3.0 614,170 - trxB Synpcc7942_0623 0.14 -4.0 614,180 - trxB Synpcc7942_0623 0.15 -3.4 614,187 + trxB Synpcc7942_0623 0.16 -0.4 614,207 + trxB Synpcc7942_0623 0.17 -0.4 614,214 + trxB Synpcc7942_0623 0.18 -2.4 614,337 + trxB Synpcc7942_0623 0.26 -1.4 614,394 + -1.4 614,606 - trxB Synpcc7942_0623 0.46 -2.7 614,610 + trxB Synpcc7942_0623 0.46 -1.4 614,622 + trxB Synpcc7942_0623 0.47 -3.4 614,630 - trxB Synpcc7942_0623 0.48 -1.4 614,630 - trxB Synpcc7942_0623 0.48 -0.4 614,630 - trxB Synpcc7942_0623 0.48 -2.4 614,630 - trxB Synpcc7942_0623 0.48 -1.4 614,780 - trxB Synpcc7942_0623 0.59 -3.4 614,821 + trxB Synpcc7942_0623 0.62 -1.4 614,899 - trxB Synpcc7942_0623 0.67 -0.4 614,966 - trxB Synpcc7942_0623 0.72 -2.4 615,004 + trxB Synpcc7942_0623 0.75 -2.4 615,034 - trxB Synpcc7942_0623 0.77 -2.7 615,044 - trxB Synpcc7942_0623 0.78 -0.4 615,046 - trxB Synpcc7942_0623 0.78 -0.4 615,048 + trxB Synpcc7942_0623 0.78 -1.8 615,048 + trxB Synpcc7942_0623 0.78 -2.0 615,095 - trxB Synpcc7942_0623 0.81 -1.4 615,097 + trxB Synpcc7942_0623 0.82 -1.4 615,130 - trxB Synpcc7942_0623 0.84 -2.0 615,166 + trxB Synpcc7942_0623 0.87 -1.8 615,174 - trxB Synpcc7942_0623 0.87 -2.0 615,174 - trxB Synpcc7942_0623 0.87 -0.4 615,242 + -0.4 615,261 - -1.4 615,264 + -3.7 615,264 + -2.4 615,344 + +0.6 615,351 + -3.0 615,353 + -2.4 615,353 + -2.1 615,386 + -2.4 615,396 - -1.4 615,404 + -3.8 615,467 + ldpA Synpcc7942_0624 0.10 -3.4 615,467 + ldpA Synpcc7942_0624 0.10 -1.2 615,474 - ldpA Synpcc7942_0624 0.11 -2.8 615,475 - ldpA Synpcc7942_0624 0.11 -3.4 615,519 + ldpA Synpcc7942_0624 0.15 +0.6 615,593 + ldpA Synpcc7942_0624 0.22 -0.3 615,593 + ldpA Synpcc7942_0624 0.22 -3.4 615,658 - ldpA Synpcc7942_0624 0.28 -2.4 615,662 + ldpA Synpcc7942_0624 0.28 -2.3 615,670 - ldpA Synpcc7942_0624 0.29 -2.4 615,670 - ldpA Synpcc7942_0624 0.29 -2.4 615,670 - ldpA Synpcc7942_0624 0.29 -2.4 615,751 + ldpA Synpcc7942_0624 0.37 -2.4 615,786 + ldpA Synpcc7942_0624 0.40 -3.4 615,902 + ldpA Synpcc7942_0624 0.51 -0.8 615,975 + ldpA Synpcc7942_0624 0.58 -2.4 615,983 - ldpA Synpcc7942_0624 0.59 -3.4 616,075 - ldpA Synpcc7942_0624 0.67 -2.4 616,089 - ldpA Synpcc7942_0624 0.69 -2.4 616,093 + ldpA Synpcc7942_0624 0.69 -3.8 616,195 + ldpA Synpcc7942_0624 0.79 -4.1 616,321 + -0.4
Or see this region's nucleotide sequence