Experiment: nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cdsA and Synpcc7942_0395 are separated by 273 nucleotides Synpcc7942_0395 and purH are separated by 334 nucleotides
Synpcc7942_0394: cdsA - phosphatidate cytidylyltransferase, at 387,354 to 388,220
cdsA
Synpcc7942_0395: Synpcc7942_0395 - hypothetical protein, at 388,494 to 389,618
_0395
Synpcc7942_0396: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 389,953 to 391,494
purH
Position (kb) 388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 387.511 kb on - strand, within cdsA at 387.661 kb on - strand, within cdsA at 387.998 kb on + strand, within cdsA at 388.230 kb on - strand at 388.252 kb on + strand at 388.293 kb on - strand at 388.321 kb on + strand at 388.329 kb on - strand at 388.343 kb on + strand at 388.406 kb on - strand at 388.474 kb on + strand at 388.484 kb on + strand at 388.497 kb on - strand at 388.511 kb on - strand at 388.589 kb on - strand at 388.597 kb on + strand at 388.605 kb on - strand at 388.708 kb on + strand, within Synpcc7942_0395 at 388.708 kb on + strand, within Synpcc7942_0395 at 388.708 kb on + strand, within Synpcc7942_0395 at 388.715 kb on + strand, within Synpcc7942_0395 at 388.716 kb on - strand, within Synpcc7942_0395 at 388.736 kb on + strand, within Synpcc7942_0395 at 388.736 kb on + strand, within Synpcc7942_0395 at 388.744 kb on + strand, within Synpcc7942_0395 at 388.752 kb on - strand, within Synpcc7942_0395 at 388.752 kb on - strand, within Synpcc7942_0395 at 388.752 kb on - strand, within Synpcc7942_0395 at 388.778 kb on + strand, within Synpcc7942_0395 at 388.867 kb on + strand, within Synpcc7942_0395 at 388.867 kb on + strand, within Synpcc7942_0395 at 388.875 kb on - strand, within Synpcc7942_0395 at 388.875 kb on - strand, within Synpcc7942_0395 at 388.900 kb on + strand, within Synpcc7942_0395 at 388.925 kb on + strand, within Synpcc7942_0395 at 388.964 kb on + strand, within Synpcc7942_0395 at 388.974 kb on + strand, within Synpcc7942_0395 at 388.999 kb on - strand, within Synpcc7942_0395 at 389.093 kb on + strand, within Synpcc7942_0395 at 389.149 kb on + strand, within Synpcc7942_0395 at 389.149 kb on + strand, within Synpcc7942_0395 at 389.157 kb on - strand, within Synpcc7942_0395 at 389.296 kb on - strand, within Synpcc7942_0395 at 389.305 kb on + strand, within Synpcc7942_0395 at 389.307 kb on + strand, within Synpcc7942_0395 at 389.313 kb on - strand, within Synpcc7942_0395 at 389.313 kb on - strand, within Synpcc7942_0395 at 389.319 kb on + strand at 389.321 kb on - strand, within Synpcc7942_0395 at 389.326 kb on + strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.327 kb on - strand, within Synpcc7942_0395 at 389.349 kb on + strand, within Synpcc7942_0395 at 389.394 kb on - strand, within Synpcc7942_0395 at 389.442 kb on + strand, within Synpcc7942_0395 at 389.469 kb on - strand, within Synpcc7942_0395 at 389.508 kb on - strand at 389.576 kb on - strand at 389.600 kb on - strand at 389.605 kb on - strand at 389.619 kb on + strand at 389.622 kb on - strand at 389.624 kb on + strand at 389.627 kb on - strand at 389.631 kb on + strand at 389.639 kb on - strand at 389.639 kb on - strand at 389.639 kb on - strand at 389.668 kb on + strand at 389.675 kb on - strand at 389.676 kb on - strand at 389.680 kb on + strand at 389.680 kb on + strand at 389.688 kb on - strand at 389.703 kb on + strand at 389.704 kb on - strand at 389.711 kb on - strand at 389.726 kb on - strand at 389.854 kb on + strand at 389.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 5 mM remove 387,511 - cdsA Synpcc7942_0394 0.18 -1.4 387,661 - cdsA Synpcc7942_0394 0.35 -1.4 387,998 + cdsA Synpcc7942_0394 0.74 +0.2 388,230 - -0.4 388,252 + +0.9 388,293 - -0.6 388,321 + +1.7 388,329 - +3.3 388,343 + -2.4 388,406 - +0.9 388,474 + -2.4 388,484 + -0.4 388,497 - -1.0 388,511 - -0.6 388,589 - -1.4 388,597 + +0.2 388,605 - -2.1 388,708 + Synpcc7942_0395 0.19 -1.8 388,708 + Synpcc7942_0395 0.19 +0.2 388,708 + Synpcc7942_0395 0.19 -1.0 388,715 + Synpcc7942_0395 0.20 -1.0 388,716 - Synpcc7942_0395 0.20 -0.7 388,736 + Synpcc7942_0395 0.22 -2.4 388,736 + Synpcc7942_0395 0.22 -1.7 388,744 + Synpcc7942_0395 0.22 -0.8 388,752 - Synpcc7942_0395 0.23 -2.4 388,752 - Synpcc7942_0395 0.23 -0.7 388,752 - Synpcc7942_0395 0.23 -2.0 388,778 + Synpcc7942_0395 0.25 -3.7 388,867 + Synpcc7942_0395 0.33 +0.2 388,867 + Synpcc7942_0395 0.33 -0.8 388,875 - Synpcc7942_0395 0.34 -1.4 388,875 - Synpcc7942_0395 0.34 -0.6 388,900 + Synpcc7942_0395 0.36 +0.9 388,925 + Synpcc7942_0395 0.38 -1.0 388,964 + Synpcc7942_0395 0.42 -2.0 388,974 + Synpcc7942_0395 0.43 -0.4 388,999 - Synpcc7942_0395 0.45 -0.2 389,093 + Synpcc7942_0395 0.53 -2.4 389,149 + Synpcc7942_0395 0.58 -1.5 389,149 + Synpcc7942_0395 0.58 -3.0 389,157 - Synpcc7942_0395 0.59 -0.1 389,296 - Synpcc7942_0395 0.71 -0.8 389,305 + Synpcc7942_0395 0.72 -2.4 389,307 + Synpcc7942_0395 0.72 -0.8 389,313 - Synpcc7942_0395 0.73 -0.8 389,313 - Synpcc7942_0395 0.73 -1.7 389,319 + -2.4 389,321 - Synpcc7942_0395 0.74 -2.4 389,326 + Synpcc7942_0395 0.74 -0.8 389,327 - Synpcc7942_0395 0.74 -2.4 389,327 - Synpcc7942_0395 0.74 -2.4 389,327 - Synpcc7942_0395 0.74 +0.6 389,327 - Synpcc7942_0395 0.74 +0.4 389,349 + Synpcc7942_0395 0.76 -0.8 389,394 - Synpcc7942_0395 0.80 -3.7 389,442 + Synpcc7942_0395 0.84 -0.8 389,469 - Synpcc7942_0395 0.87 -0.4 389,508 - -3.7 389,576 - -1.4 389,600 - -0.2 389,605 - +0.2 389,619 + +0.1 389,622 - -1.1 389,624 + +0.6 389,627 - -1.4 389,631 + +0.2 389,639 - -0.5 389,639 - +1.0 389,639 - -0.4 389,668 + -0.5 389,675 - -0.9 389,676 - +1.8 389,680 + -1.4 389,680 + -1.4 389,688 - -1.4 389,703 + +1.3 389,704 - -0.2 389,711 - +0.2 389,726 - -0.4 389,854 + -0.0 389,873 - +0.9
Or see this region's nucleotide sequence