Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0115

Experiment: nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 5 mM
112,640	+	phr	Synpcc7942_0112	0.66	+0.8
112,645	+	phr	Synpcc7942_0112	0.66	+1.9
112,645	+	phr	Synpcc7942_0112	0.66	+1.6
112,648	-	phr	Synpcc7942_0112	0.66	-3.0
112,652	+	phr	Synpcc7942_0112	0.66	+0.6
112,652	+	phr	Synpcc7942_0112	0.66	+3.2
112,652	+	phr	Synpcc7942_0112	0.66	-0.6
112,652	+	phr	Synpcc7942_0112	0.66	+0.5
112,652	+	phr	Synpcc7942_0112	0.66	+1.4
112,652	+	phr	Synpcc7942_0112	0.66	+0.2
112,653	-	phr	Synpcc7942_0112	0.66	-2.4
112,660	-	phr	Synpcc7942_0112	0.67	+5.2
112,660	-	phr	Synpcc7942_0112	0.67	+1.7
112,660	-	phr	Synpcc7942_0112	0.67	+2.8
112,660	-	phr	Synpcc7942_0112	0.67	+1.1
112,724	+	phr	Synpcc7942_0112	0.71	+1.9
112,762	+	phr	Synpcc7942_0112	0.74	+1.9
112,764	-	phr	Synpcc7942_0112	0.74	-1.8
112,776	-	phr	Synpcc7942_0112	0.75	-0.1
112,791	+	phr	Synpcc7942_0112	0.76	+1.2
112,811	-	phr	Synpcc7942_0112	0.77	-1.4
112,821	-	phr	Synpcc7942_0112	0.78	+0.9
112,821	-	phr	Synpcc7942_0112	0.78	-0.0
112,827	-	phr	Synpcc7942_0112	0.78	+0.2
112,859	-	phr	Synpcc7942_0112	0.81	-0.2
112,865	+	phr	Synpcc7942_0112	0.81	+1.6
112,889	-	phr	Synpcc7942_0112	0.83	+0.6
112,890	-	phr	Synpcc7942_0112	0.83	+1.5
112,927	+	phr	Synpcc7942_0112	0.85	+0.8
112,927	+	phr	Synpcc7942_0112	0.85	-0.1
112,944	-	phr	Synpcc7942_0112	0.86	-2.4
112,980	-	phr	Synpcc7942_0112	0.89	+2.9
112,987	-	phr	Synpcc7942_0112	0.89	+0.9
112,991	+	phr	Synpcc7942_0112	0.90	+0.7
112,991	+				-1.4
112,993	+	phr	Synpcc7942_0112	0.90	-1.4
112,999	-				+1.1
113,009	-				-0.2
113,009	-				+1.6
113,029	+				-0.2
113,042	-				-0.1
113,042	-				+0.2
113,052	+				+1.8
113,052	+				+0.4
113,074	+				+0.8
113,074	+				+0.4
113,074	+				+1.4
113,082	-				-1.2
113,082	-				-0.2
113,082	-				+0.6
113,084	+				+0.9
113,084	+				+0.6
113,103	-				-1.4
113,103	-				-0.4
113,116	+				-2.0
113,116	+				+0.8
113,117	+				-0.8
113,122	+				+0.9
113,124	-				-3.0
113,124	-				+1.0
113,124	-				-1.4
113,124	-				+0.6
113,130	-				+0.3
113,133	+				+0.3
113,141	-				+1.1
113,183	-				-0.5
113,265	-	petL	Synpcc7942_0113	0.74	+0.6
113,265	-	petL	Synpcc7942_0113	0.74	+0.9
113,267	+	petL	Synpcc7942_0113	0.76	-0.7
113,272	+	petL	Synpcc7942_0113	0.82	+0.8
113,282	+				+1.5
113,290	-				+0.6
113,290	-				+0.2
113,297	+				+0.4
113,297	+				+1.1
113,297	+				+2.3
113,305	-				+1.2
113,305	-				-0.4
113,305	-				+1.7
113,305	-				+0.5
113,345	-				+2.8
113,374	+		Synpcc7942_0114	0.13	+0.6
113,425	-		Synpcc7942_0114	0.26	+0.2
113,445	-		Synpcc7942_0114	0.32	+1.1
113,461	+		Synpcc7942_0114	0.36	+0.9
113,478	+		Synpcc7942_0114	0.41	-2.4
113,478	+				-0.4
113,486	-		Synpcc7942_0114	0.43	+0.2
113,486	-		Synpcc7942_0114	0.43	-1.4
113,530	-		Synpcc7942_0114	0.55	+1.0
113,530	-		Synpcc7942_0114	0.55	-0.1
113,530	-		Synpcc7942_0114	0.55	-2.4
113,535	-		Synpcc7942_0114	0.56	+0.2
113,535	-		Synpcc7942_0114	0.56	+0.8
113,590	+		Synpcc7942_0114	0.71	-0.4
113,598	-		Synpcc7942_0114	0.73	+0.8
113,617	+		Synpcc7942_0114	0.78	+0.2
113,620	-		Synpcc7942_0114	0.79	-2.7
113,649	+				-0.2
113,649	+				-0.4
113,657	-				+0.4
113,663	+				-0.4
113,663	+				+0.0
113,730	+		Synpcc7942_0115	0.19	+0.3
113,733	+		Synpcc7942_0115	0.20	+1.1
113,733	+		Synpcc7942_0115	0.20	+0.7
113,733	+		Synpcc7942_0115	0.20	-0.4
113,741	-		Synpcc7942_0115	0.21	-1.4
113,760	+		Synpcc7942_0115	0.25	+0.7
113,760	+		Synpcc7942_0115	0.25	+1.9
113,768	-		Synpcc7942_0115	0.27	+0.9
113,774	-		Synpcc7942_0115	0.28	-0.8
113,774	-		Synpcc7942_0115	0.28	+0.2
113,774	-		Synpcc7942_0115	0.28	+0.2
113,807	+		Synpcc7942_0115	0.34	+0.9
113,861	+		Synpcc7942_0115	0.45	+2.7
113,921	+		Synpcc7942_0115	0.56	-0.4
113,921	+		Synpcc7942_0115	0.56	+1.3
113,921	+		Synpcc7942_0115	0.56	+0.3
113,965	+		Synpcc7942_0115	0.65	-0.0
113,981	-		Synpcc7942_0115	0.68	-0.4
113,988	-		Synpcc7942_0115	0.69	+1.0
113,995	+		Synpcc7942_0115	0.71	+0.2
113,995	+		Synpcc7942_0115	0.71	+0.1
113,995	+		Synpcc7942_0115	0.71	+0.2
114,003	-		Synpcc7942_0115	0.72	-1.4
114,003	-		Synpcc7942_0115	0.72	+0.5
114,003	-		Synpcc7942_0115	0.72	-0.4
114,018	+		Synpcc7942_0115	0.75	-0.7
114,029	+		Synpcc7942_0115	0.77	+1.5
114,037	-		Synpcc7942_0115	0.79	+1.2
114,037	-		Synpcc7942_0115	0.79	+0.1
114,066	+		Synpcc7942_0115	0.84	+1.3
114,086	+		Synpcc7942_0115	0.88	+1.4
114,091	+		Synpcc7942_0115	0.89	+1.2
114,136	+				+0.7
114,141	+				+0.8
114,141	+				+1.2
114,156	+				+2.1
114,175	+				-1.4
114,176	+				-2.4
114,183	-				+0.5
114,261	+				-3.2
114,300	+				+1.4
114,348	-				+1.1
114,391	+				+0.7
114,393	-				-1.0
114,399	-	cscK	Synpcc7942_0116	0.10	+1.9
114,450	-	cscK	Synpcc7942_0116	0.15	+0.4
114,477	-	cscK	Synpcc7942_0116	0.18	+1.6
114,491	-	cscK	Synpcc7942_0116	0.20	+1.1
114,491	-	cscK	Synpcc7942_0116	0.20	-3.0
114,491	-	cscK	Synpcc7942_0116	0.20	+0.2
114,518	+	cscK	Synpcc7942_0116	0.22	+1.5
114,518	+	cscK	Synpcc7942_0116	0.22	+2.0
114,538	-	cscK	Synpcc7942_0116	0.25	+1.5
114,548	+	cscK	Synpcc7942_0116	0.26	+2.4
114,548	+	cscK	Synpcc7942_0116	0.26	+1.5
114,556	-	cscK	Synpcc7942_0116	0.26	+0.9
114,580	+	cscK	Synpcc7942_0116	0.29	+1.5
114,588	-	cscK	Synpcc7942_0116	0.30	-0.4
114,605	+	cscK	Synpcc7942_0116	0.31	+0.9
114,624	+	cscK	Synpcc7942_0116	0.33	+0.6
114,715	+	cscK	Synpcc7942_0116	0.43	+0.1
114,717	+	cscK	Synpcc7942_0116	0.43	+1.4
114,725	-	cscK	Synpcc7942_0116	0.44	+1.6
114,745	-	cscK	Synpcc7942_0116	0.46	-1.4
114,750	-	cscK	Synpcc7942_0116	0.46	-1.0
114,750	-	cscK	Synpcc7942_0116	0.46	+0.6
114,801	-	cscK	Synpcc7942_0116	0.51	+1.1
114,803	-	cscK	Synpcc7942_0116	0.52	+0.0
114,812	+	cscK	Synpcc7942_0116	0.53	-1.8
115,021	-	cscK	Synpcc7942_0116	0.74	+1.4
115,124	+	cscK	Synpcc7942_0116	0.85	+1.1
115,146	+	cscK	Synpcc7942_0116	0.87	+1.2