Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0027

Experiment: nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0026 and bioF are separated by 124 nucleotidesbioF and Synpcc7942_0028 overlap by 4 nucleotidesSynpcc7942_0028 and Synpcc7942_0029 overlap by 4 nucleotides Synpcc7942_0026: Synpcc7942_0026 - hypothetical protein, at 27,082 to 28,059 _0026 Synpcc7942_0027: bioF - 8-amino-7-oxononanoate synthase, at 28,184 to 29,350 bioF Synpcc7942_0028: Synpcc7942_0028 - hypothetical protein, at 29,347 to 30,015 _0028 Synpcc7942_0029: Synpcc7942_0029 - hypothetical protein, at 30,012 to 30,833 _0029 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 27.184 kb on - strand, within Synpcc7942_0026at 27.187 kb on + strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.189 kb on - strand, within Synpcc7942_0026at 27.190 kb on - strand, within Synpcc7942_0026at 27.190 kb on - strand, within Synpcc7942_0026at 27.192 kb on + strand, within Synpcc7942_0026at 27.195 kb on - strand, within Synpcc7942_0026at 27.218 kb on + strandat 27.224 kb on + strand, within Synpcc7942_0026at 27.224 kb on + strand, within Synpcc7942_0026at 27.232 kb on - strand, within Synpcc7942_0026at 27.237 kb on + strand, within Synpcc7942_0026at 27.247 kb on + strand, within Synpcc7942_0026at 27.247 kb on + strand, within Synpcc7942_0026at 27.247 kb on + strand, within Synpcc7942_0026at 27.254 kb on - strand, within Synpcc7942_0026at 27.254 kb on - strand, within Synpcc7942_0026at 27.255 kb on - strand, within Synpcc7942_0026at 27.255 kb on - strand, within Synpcc7942_0026at 27.255 kb on - strand, within Synpcc7942_0026at 27.256 kb on + strandat 27.271 kb on - strand, within Synpcc7942_0026at 27.294 kb on - strand, within Synpcc7942_0026at 27.294 kb on - strand, within Synpcc7942_0026at 27.312 kb on - strand, within Synpcc7942_0026at 27.366 kb on + strand, within Synpcc7942_0026at 27.371 kb on + strand, within Synpcc7942_0026at 27.397 kb on + strand, within Synpcc7942_0026at 27.409 kb on + strand, within Synpcc7942_0026at 27.421 kb on + strand, within Synpcc7942_0026at 27.423 kb on - strand, within Synpcc7942_0026at 27.423 kb on - strandat 27.424 kb on - strand, within Synpcc7942_0026at 27.424 kb on - strand, within Synpcc7942_0026at 27.426 kb on + strand, within Synpcc7942_0026at 27.505 kb on - strand, within Synpcc7942_0026at 27.511 kb on + strand, within Synpcc7942_0026at 27.541 kb on + strand, within Synpcc7942_0026at 27.541 kb on + strand, within Synpcc7942_0026at 27.541 kb on + strand, within Synpcc7942_0026at 27.644 kb on - strand, within Synpcc7942_0026at 27.700 kb on + strand, within Synpcc7942_0026at 27.734 kb on + strand, within Synpcc7942_0026at 27.751 kb on + strand, within Synpcc7942_0026at 27.756 kb on - strand, within Synpcc7942_0026at 27.780 kb on + strand, within Synpcc7942_0026at 27.780 kb on + strand, within Synpcc7942_0026at 27.790 kb on + strand, within Synpcc7942_0026at 27.798 kb on - strand, within Synpcc7942_0026at 27.807 kb on + strand, within Synpcc7942_0026at 27.813 kb on + strand, within Synpcc7942_0026at 27.814 kb on + strand, within Synpcc7942_0026at 27.815 kb on - strand, within Synpcc7942_0026at 27.825 kb on + strand, within Synpcc7942_0026at 27.871 kb on + strand, within Synpcc7942_0026at 27.871 kb on + strand, within Synpcc7942_0026at 27.873 kb on + strand, within Synpcc7942_0026at 27.873 kb on + strand, within Synpcc7942_0026at 27.879 kb on - strand, within Synpcc7942_0026at 27.926 kb on + strand, within Synpcc7942_0026at 27.943 kb on + strand, within Synpcc7942_0026at 27.951 kb on - strand, within Synpcc7942_0026at 27.951 kb on - strand, within Synpcc7942_0026at 27.962 kb on + strandat 27.962 kb on + strandat 27.962 kb on + strandat 27.970 kb on - strandat 27.970 kb on - strandat 27.986 kb on + strandat 28.008 kb on - strandat 28.008 kb on - strandat 28.035 kb on + strandat 28.051 kb on + strandat 28.056 kb on + strandat 28.062 kb on - strandat 28.064 kb on - strandat 28.074 kb on - strandat 28.112 kb on + strandat 28.118 kb on - strandat 28.121 kb on + strandat 28.135 kb on + strandat 28.135 kb on + strandat 28.179 kb on + strandat 28.179 kb on + strandat 29.325 kb on - strandat 29.337 kb on - strandat 29.341 kb on - strandat 29.344 kb on + strandat 29.351 kb on - strandat 29.351 kb on - strandat 29.351 kb on - strandat 29.351 kb on - strandat 29.351 kb on - strandat 29.993 kb on - strandat 30.008 kb on - strandat 30.018 kb on + strandat 30.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 5 mM
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27,184 - Synpcc7942_0026 0.10 -0.5
27,187 + Synpcc7942_0026 0.11 +0.7
27,189 - Synpcc7942_0026 0.11 +0.7
27,189 - Synpcc7942_0026 0.11 -1.4
27,189 - Synpcc7942_0026 0.11 +1.4
27,189 - Synpcc7942_0026 0.11 +1.1
27,189 - Synpcc7942_0026 0.11 -0.3
27,190 - Synpcc7942_0026 0.11 +0.8
27,190 - Synpcc7942_0026 0.11 -1.4
27,192 + Synpcc7942_0026 0.11 +0.6
27,195 - Synpcc7942_0026 0.12 +2.1
27,218 + -2.0
27,224 + Synpcc7942_0026 0.15 +0.8
27,224 + Synpcc7942_0026 0.15 -1.0
27,232 - Synpcc7942_0026 0.15 +1.1
27,237 + Synpcc7942_0026 0.16 +1.5
27,247 + Synpcc7942_0026 0.17 -0.4
27,247 + Synpcc7942_0026 0.17 +1.4
27,247 + Synpcc7942_0026 0.17 -0.1
27,254 - Synpcc7942_0026 0.18 +1.0
27,254 - Synpcc7942_0026 0.18 +1.2
27,255 - Synpcc7942_0026 0.18 -0.4
27,255 - Synpcc7942_0026 0.18 +1.5
27,255 - Synpcc7942_0026 0.18 +2.4
27,256 + -1.4
27,271 - Synpcc7942_0026 0.19 +1.3
27,294 - Synpcc7942_0026 0.22 +2.7
27,294 - Synpcc7942_0026 0.22 +1.2
27,312 - Synpcc7942_0026 0.24 +0.9
27,366 + Synpcc7942_0026 0.29 +0.6
27,371 + Synpcc7942_0026 0.30 +1.0
27,397 + Synpcc7942_0026 0.32 +1.8
27,409 + Synpcc7942_0026 0.33 +1.8
27,421 + Synpcc7942_0026 0.35 -0.8
27,423 - Synpcc7942_0026 0.35 +1.6
27,423 - +1.4
27,424 - Synpcc7942_0026 0.35 -0.7
27,424 - Synpcc7942_0026 0.35 +1.0
27,426 + Synpcc7942_0026 0.35 +0.1
27,505 - Synpcc7942_0026 0.43 +1.4
27,511 + Synpcc7942_0026 0.44 +1.4
27,541 + Synpcc7942_0026 0.47 +1.7
27,541 + Synpcc7942_0026 0.47 +0.6
27,541 + Synpcc7942_0026 0.47 -1.1
27,644 - Synpcc7942_0026 0.57 +0.7
27,700 + Synpcc7942_0026 0.63 -0.8
27,734 + Synpcc7942_0026 0.67 +0.2
27,751 + Synpcc7942_0026 0.68 +0.8
27,756 - Synpcc7942_0026 0.69 -1.8
27,780 + Synpcc7942_0026 0.71 -0.9
27,780 + Synpcc7942_0026 0.71 +0.8
27,790 + Synpcc7942_0026 0.72 -0.1
27,798 - Synpcc7942_0026 0.73 -3.4
27,807 + Synpcc7942_0026 0.74 +1.1
27,813 + Synpcc7942_0026 0.75 -0.4
27,814 + Synpcc7942_0026 0.75 +1.4
27,815 - Synpcc7942_0026 0.75 -0.4
27,825 + Synpcc7942_0026 0.76 +1.2
27,871 + Synpcc7942_0026 0.81 +3.1
27,871 + Synpcc7942_0026 0.81 +0.9
27,873 + Synpcc7942_0026 0.81 -0.7
27,873 + Synpcc7942_0026 0.81 -0.1
27,879 - Synpcc7942_0026 0.81 -0.4
27,926 + Synpcc7942_0026 0.86 +2.0
27,943 + Synpcc7942_0026 0.88 +0.1
27,951 - Synpcc7942_0026 0.89 +0.7
27,951 - Synpcc7942_0026 0.89 -0.5
27,962 + +0.2
27,962 + +0.4
27,962 + +0.6
27,970 - +0.9
27,970 - -1.0
27,986 + -0.4
28,008 - +0.6
28,008 - +1.8
28,035 + +0.6
28,051 + +1.7
28,056 + -0.0
28,062 - +2.2
28,064 - -1.1
28,074 - +1.4
28,112 + +1.2
28,118 - -0.3
28,121 + +0.2
28,135 + -0.8
28,135 + +1.0
28,179 + +1.8
28,179 + +0.2
29,325 - +0.6
29,337 - -0.4
29,341 - +1.9
29,344 + +1.6
29,351 - +1.8
29,351 - +0.2
29,351 - -1.3
29,351 - +0.2
29,351 - -1.5
29,993 - -1.4
30,008 - +1.6
30,018 + +1.1
30,037 - +1.8

Or see this region's nucleotide sequence