Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02325 and SMc03000 overlap by 4 nucleotides SMc03000 and SMc03001 overlap by 1 nucleotides SMc03001 and SMc03002 are separated by 10 nucleotides SMc03002 and SMc03003 overlap by 4 nucleotides
SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774
SMc02325
SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751
SMc03000
SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755
SMc03001
SMc03002: SMc03002 - hypothetical protein, at 699,766 to 700,080
SMc03002
SMc03003: SMc03003 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) <small>(from data)</small>, at 700,077 to 701,465
SMc03003
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1
2 at 697.893 kb on + strand, within SMc03000 at 697.893 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.413 kb on + strand, within SMc03000 at 698.414 kb on - strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.889 kb on + strand, within SMc03001 at 699.040 kb on - strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.265 kb on - strand, within SMc03001 at 699.321 kb on + strand, within SMc03001 at 699.363 kb on + strand, within SMc03001 at 699.399 kb on + strand, within SMc03001 at 699.776 kb on - strand at 699.817 kb on + strand, within SMc03002 at 699.818 kb on - strand, within SMc03002 at 699.887 kb on - strand, within SMc03002 at 700.002 kb on + strand, within SMc03002 at 700.106 kb on + strand at 700.255 kb on + strand, within SMc03003 at 700.366 kb on - strand, within SMc03003 at 700.401 kb on + strand, within SMc03003 at 700.401 kb on + strand, within SMc03003 at 700.537 kb on - strand, within SMc03003 at 700.545 kb on + strand, within SMc03003 at 700.546 kb on - strand, within SMc03003
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 697,893 + SMc03000 0.12 -0.6 697,893 + SMc03000 0.12 -0.6 698,118 + SMc03000 0.35 +0.0 698,118 + SMc03000 0.35 +0.5 698,118 + SMc03000 0.35 -1.2 698,158 + SMc03000 0.39 -1.3 698,158 + SMc03000 0.39 +1.3 698,158 + SMc03000 0.39 -0.6 698,413 + SMc03000 0.65 -1.3 698,414 - SMc03000 0.66 -0.7 698,449 + SMc03000 0.69 -1.7 698,449 + SMc03000 0.69 -1.2 698,631 + SMc03000 0.88 -0.8 698,631 + SMc03000 0.88 +0.4 698,632 - SMc03000 0.88 -0.9 698,632 - SMc03000 0.88 +0.1 698,889 + SMc03001 0.14 -0.7 699,040 - SMc03001 0.29 -0.3 699,264 + SMc03001 0.51 -0.5 699,264 + SMc03001 0.51 +1.9 699,264 + SMc03001 0.51 +0.1 699,264 + SMc03001 0.51 -0.4 699,265 - SMc03001 0.51 +0.3 699,321 + SMc03001 0.57 +1.7 699,363 + SMc03001 0.61 -0.9 699,399 + SMc03001 0.64 -0.5 699,776 - +0.2 699,817 + SMc03002 0.16 -0.5 699,818 - SMc03002 0.17 +0.2 699,887 - SMc03002 0.38 +1.0 700,002 + SMc03002 0.75 -0.0 700,106 + -1.5 700,255 + SMc03003 0.13 +0.2 700,366 - SMc03003 0.21 -0.5 700,401 + SMc03003 0.23 -0.2 700,401 + SMc03003 0.23 +1.5 700,537 - SMc03003 0.33 +0.7 700,545 + SMc03003 0.34 -1.8 700,546 - SMc03003 0.34 -1.2
Or see this region's nucleotide sequence