Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02496 and SMc02495 are separated by 175 nucleotides SMc02495 and SMc02494 are separated by 80 nucleotides SMc02494 and SMc02493 are separated by 554 nucleotides
SMc02496: SMc02496 - primosome assembly protein PriA, at 3,296,436 to 3,298,640
SMc02496
SMc02495: SMc02495 - translaldolase, at 3,298,816 to 3,299,469
SMc02495
SMc02494: SMc02494 - hypothetical protein, at 3,299,550 to 3,301,079
SMc02494
SMc02493: SMc02493 - hypothetical protein, at 3,301,634 to 3,302,230
SMc02493
Position (kb)
3299
3300
3301
3302 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3298.606 kb on - strand at 3299.221 kb on - strand, within SMc02495 at 3299.282 kb on - strand, within SMc02495 at 3299.614 kb on + strand at 3299.615 kb on - strand at 3299.700 kb on + strand at 3299.701 kb on - strand at 3299.782 kb on + strand, within SMc02494 at 3299.900 kb on - strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.953 kb on + strand, within SMc02494 at 3299.975 kb on - strand, within SMc02494 at 3300.036 kb on - strand, within SMc02494 at 3300.121 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.149 kb on + strand, within SMc02494 at 3300.150 kb on - strand, within SMc02494 at 3300.379 kb on - strand, within SMc02494 at 3300.469 kb on + strand, within SMc02494 at 3300.469 kb on + strand, within SMc02494 at 3300.470 kb on - strand, within SMc02494 at 3300.691 kb on + strand, within SMc02494 at 3300.691 kb on + strand, within SMc02494 at 3300.691 kb on + strand, within SMc02494 at 3300.692 kb on - strand, within SMc02494 at 3300.711 kb on - strand, within SMc02494 at 3301.025 kb on + strand at 3301.026 kb on - strand at 3301.186 kb on - strand at 3301.510 kb on - strand at 3301.631 kb on - strand at 3301.778 kb on + strand, within SMc02493 at 3301.787 kb on + strand, within SMc02493 at 3301.788 kb on - strand, within SMc02493 at 3301.788 kb on - strand, within SMc02493 at 3301.910 kb on + strand, within SMc02493 at 3301.910 kb on + strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.979 kb on - strand, within SMc02493
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 3,298,606 - -1.1 3,299,221 - SMc02495 0.62 -1.9 3,299,282 - SMc02495 0.71 -1.7 3,299,614 + -2.2 3,299,615 - +1.2 3,299,700 + +0.9 3,299,701 - -1.4 3,299,782 + SMc02494 0.15 -0.0 3,299,900 - SMc02494 0.23 +0.8 3,299,953 + SMc02494 0.26 +0.7 3,299,953 + SMc02494 0.26 +0.4 3,299,953 + SMc02494 0.26 -1.0 3,299,953 + SMc02494 0.26 -0.0 3,299,975 - SMc02494 0.28 +0.2 3,300,036 - SMc02494 0.32 +0.9 3,300,121 + SMc02494 0.37 -0.1 3,300,149 + SMc02494 0.39 -0.7 3,300,149 + SMc02494 0.39 -1.6 3,300,149 + SMc02494 0.39 +2.9 3,300,149 + SMc02494 0.39 +0.1 3,300,149 + SMc02494 0.39 +0.1 3,300,149 + SMc02494 0.39 +1.2 3,300,150 - SMc02494 0.39 +0.2 3,300,379 - SMc02494 0.54 -0.6 3,300,469 + SMc02494 0.60 +0.8 3,300,469 + SMc02494 0.60 -0.2 3,300,470 - SMc02494 0.60 -0.3 3,300,691 + SMc02494 0.75 -1.2 3,300,691 + SMc02494 0.75 +1.0 3,300,691 + SMc02494 0.75 -0.3 3,300,692 - SMc02494 0.75 -0.2 3,300,711 - SMc02494 0.76 +0.1 3,301,025 + -0.1 3,301,026 - -1.8 3,301,186 - -0.1 3,301,510 - -0.9 3,301,631 - -1.3 3,301,778 + SMc02493 0.24 +0.4 3,301,787 + SMc02493 0.26 -0.8 3,301,788 - SMc02493 0.26 -1.0 3,301,788 - SMc02493 0.26 -2.5 3,301,910 + SMc02493 0.46 -1.9 3,301,910 + SMc02493 0.46 +0.1 3,301,911 - SMc02493 0.46 +0.4 3,301,911 - SMc02493 0.46 -0.2 3,301,911 - SMc02493 0.46 +0.2 3,301,911 - SMc02493 0.46 +0.8 3,301,979 - SMc02493 0.58 -0.9
Or see this region's nucleotide sequence