Strain Fitness in Sinorhizobium meliloti 1021 around SMc01571

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01570 and SMc01571 are separated by 112 nucleotidesSMc01571 and SMc01572 are separated by 24 nucleotidesSMc01572 and SMc01577 are separated by 10 nucleotides SMc01570: SMc01570 - transcriptional regulator, at 2,513,073 to 2,513,963 SMc01570 SMc01571: SMc01571 - oxidoreductase, at 2,514,076 to 2,514,837 SMc01571 SMc01572: SMc01572 - oxidoreductase, at 2,514,862 to 2,515,329 SMc01572 SMc01577: SMc01577 - hypothetical protein, at 2,515,340 to 2,515,723 SMc01577 Position (kb) 2514 2515Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2513.202 kb on - strand, within SMc01570at 2513.447 kb on - strand, within SMc01570at 2513.447 kb on - strand, within SMc01570at 2514.085 kb on + strandat 2514.085 kb on + strandat 2514.086 kb on - strandat 2514.156 kb on - strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.173 kb on + strand, within SMc01571at 2514.174 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.386 kb on - strand, within SMc01571at 2514.524 kb on - strand, within SMc01571at 2514.592 kb on - strand, within SMc01571at 2514.627 kb on + strand, within SMc01571at 2514.627 kb on + strand, within SMc01571at 2514.628 kb on - strand, within SMc01571at 2514.936 kb on + strand, within SMc01572at 2515.295 kb on + strandat 2515.352 kb on + strandat 2515.359 kb on + strandat 2515.359 kb on + strandat 2515.360 kb on - strandat 2515.360 kb on - strandat 2515.379 kb on + strand, within SMc01577at 2515.380 kb on - strand, within SMc01577

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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2,513,202 - SMc01570 0.14 -0.0
2,513,447 - SMc01570 0.42 -1.0
2,513,447 - SMc01570 0.42 -0.0
2,514,085 + -0.2
2,514,085 + +0.4
2,514,086 - -2.0
2,514,156 - SMc01571 0.10 +0.9
2,514,173 + SMc01571 0.13 +0.3
2,514,173 + SMc01571 0.13 +0.2
2,514,173 + SMc01571 0.13 +1.2
2,514,173 + SMc01571 0.13 +1.6
2,514,174 - SMc01571 0.13 +0.3
2,514,386 - SMc01571 0.41 -0.9
2,514,386 - SMc01571 0.41 +0.5
2,514,386 - SMc01571 0.41 +0.2
2,514,386 - SMc01571 0.41 +2.6
2,514,524 - SMc01571 0.59 +2.4
2,514,592 - SMc01571 0.68 +0.8
2,514,627 + SMc01571 0.72 -0.0
2,514,627 + SMc01571 0.72 +0.6
2,514,628 - SMc01571 0.72 +0.1
2,514,936 + SMc01572 0.16 -3.3
2,515,295 + +0.3
2,515,352 + -1.0
2,515,359 + +0.0
2,515,359 + -0.5
2,515,360 - -0.2
2,515,360 - -1.5
2,515,379 + SMc01577 0.10 -0.5
2,515,380 - SMc01577 0.10 -0.7

Or see this region's nucleotide sequence