Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00994 and SMc00989 are separated by 370 nucleotides SMc00989 and SMc00988 are separated by 72 nucleotides
SMc00994: SMc00994 - transcriptional regulator, at 944,917 to 945,732
SMc00994
SMc00989: SMc00989 - signal peptide protein, at 946,103 to 946,909
SMc00989
SMc00988: SMc00988 - 4-hydroxybenzoate polyprenyltransferase, at 946,982 to 947,938
SMc00988
Position (kb) 946
947 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 945.111 kb on + strand, within SMc00994 at 945.111 kb on + strand, within SMc00994 at 945.112 kb on - strand, within SMc00994 at 945.112 kb on - strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.205 kb on - strand, within SMc00994 at 945.205 kb on - strand, within SMc00994 at 945.217 kb on + strand, within SMc00994 at 945.218 kb on - strand, within SMc00994 at 945.218 kb on - strand, within SMc00994 at 945.395 kb on + strand, within SMc00994 at 945.395 kb on + strand, within SMc00994 at 945.396 kb on - strand, within SMc00994 at 945.709 kb on + strand at 945.710 kb on - strand at 945.761 kb on + strand at 945.762 kb on - strand at 945.762 kb on - strand at 945.802 kb on + strand at 945.802 kb on + strand at 945.857 kb on + strand at 945.920 kb on - strand at 946.202 kb on + strand, within SMc00989 at 946.202 kb on + strand, within SMc00989 at 946.203 kb on - strand, within SMc00989 at 946.213 kb on - strand, within SMc00989 at 946.241 kb on + strand, within SMc00989 at 946.343 kb on + strand, within SMc00989 at 946.344 kb on - strand, within SMc00989 at 946.437 kb on + strand, within SMc00989 at 946.438 kb on - strand, within SMc00989 at 946.518 kb on + strand, within SMc00989 at 946.518 kb on + strand, within SMc00989 at 946.519 kb on - strand, within SMc00989 at 946.528 kb on + strand, within SMc00989 at 946.640 kb on + strand, within SMc00989 at 946.641 kb on - strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.653 kb on - strand, within SMc00989 at 946.653 kb on - strand, within SMc00989 at 946.655 kb on + strand, within SMc00989 at 946.656 kb on - strand, within SMc00989 at 946.700 kb on + strand, within SMc00989 at 946.700 kb on + strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.784 kb on + strand, within SMc00989 at 946.785 kb on - strand, within SMc00989 at 946.785 kb on - strand, within SMc00989 at 946.833 kb on + strand at 946.834 kb on - strand at 946.883 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 945,111 + SMc00994 0.24 -2.0 945,111 + SMc00994 0.24 +0.4 945,112 - SMc00994 0.24 +0.1 945,112 - SMc00994 0.24 +0.1 945,204 + SMc00994 0.35 -0.2 945,204 + SMc00994 0.35 +0.2 945,204 + SMc00994 0.35 +0.5 945,205 - SMc00994 0.35 +1.6 945,205 - SMc00994 0.35 +0.0 945,217 + SMc00994 0.37 -0.3 945,218 - SMc00994 0.37 -0.1 945,218 - SMc00994 0.37 +0.6 945,395 + SMc00994 0.59 -0.3 945,395 + SMc00994 0.59 -3.8 945,396 - SMc00994 0.59 -0.4 945,709 + -2.2 945,710 - -0.1 945,761 + +0.1 945,762 - +0.6 945,762 - +1.1 945,802 + +2.2 945,802 + -0.2 945,857 + +0.2 945,920 - -0.2 946,202 + SMc00989 0.12 +2.4 946,202 + SMc00989 0.12 +1.6 946,203 - SMc00989 0.12 +0.0 946,213 - SMc00989 0.14 +0.4 946,241 + SMc00989 0.17 +0.1 946,343 + SMc00989 0.30 -0.4 946,344 - SMc00989 0.30 -1.1 946,437 + SMc00989 0.41 +0.7 946,438 - SMc00989 0.42 +1.6 946,518 + SMc00989 0.51 -0.7 946,518 + SMc00989 0.51 +0.3 946,519 - SMc00989 0.52 +0.1 946,528 + SMc00989 0.53 -1.6 946,640 + SMc00989 0.67 +0.6 946,641 - SMc00989 0.67 -1.3 946,652 + SMc00989 0.68 +0.5 946,652 + SMc00989 0.68 -0.7 946,652 + SMc00989 0.68 -0.7 946,652 + SMc00989 0.68 +2.2 946,653 - SMc00989 0.68 +1.1 946,653 - SMc00989 0.68 +1.1 946,655 + SMc00989 0.68 +1.7 946,656 - SMc00989 0.69 +1.5 946,700 + SMc00989 0.74 -0.4 946,700 + SMc00989 0.74 -1.2 946,701 - SMc00989 0.74 +0.2 946,701 - SMc00989 0.74 +3.0 946,701 - SMc00989 0.74 -0.4 946,701 - SMc00989 0.74 +0.5 946,701 - SMc00989 0.74 +0.4 946,784 + SMc00989 0.84 -0.1 946,785 - SMc00989 0.85 -0.4 946,785 - SMc00989 0.85 +0.5 946,833 + +0.2 946,834 - -0.2 946,883 + +0.5
Or see this region's nucleotide sequence