Strain Fitness in Sinorhizobium meliloti 1021 around SMc00979

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00980 and SMc00979 are separated by 295 nucleotidesSMc00979 and SMc00978 are separated by 472 nucleotides SMc00980: SMc00980 - hypothetical protein, at 957,420 to 958,445 SMc00980 SMc00979: SMc00979 - hypothetical protein, at 958,741 to 959,154 SMc00979 SMc00978: SMc00978 - hypothetical protein, at 959,627 to 960,616 SMc00978 Position (kb) 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 957.819 kb on - strand, within SMc00980at 957.844 kb on + strand, within SMc00980at 957.845 kb on - strand, within SMc00980at 957.922 kb on + strand, within SMc00980at 957.922 kb on + strand, within SMc00980at 957.923 kb on - strand, within SMc00980at 957.994 kb on + strand, within SMc00980at 957.994 kb on + strand, within SMc00980at 957.995 kb on - strand, within SMc00980at 958.057 kb on + strand, within SMc00980at 958.112 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.163 kb on - strand, within SMc00980at 958.218 kb on - strand, within SMc00980at 958.238 kb on + strand, within SMc00980at 958.239 kb on - strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.339 kb on + strand, within SMc00980at 958.340 kb on - strand, within SMc00980at 958.455 kb on + strandat 958.455 kb on + strandat 958.456 kb on - strandat 958.507 kb on - strandat 958.507 kb on - strandat 958.517 kb on - strandat 958.517 kb on - strandat 958.562 kb on - strandat 958.678 kb on - strandat 958.886 kb on - strand, within SMc00979at 958.888 kb on + strand, within SMc00979at 958.906 kb on + strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.907 kb on - strand, within SMc00979at 958.913 kb on - strand, within SMc00979at 958.957 kb on + strand, within SMc00979at 958.961 kb on - strand, within SMc00979at 958.975 kb on + strand, within SMc00979at 959.000 kb on + strand, within SMc00979at 959.065 kb on + strand, within SMc00979at 959.074 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.104 kb on + strand, within SMc00979at 959.105 kb on - strand, within SMc00979at 959.114 kb on - strandat 959.114 kb on - strandat 959.116 kb on - strandat 959.149 kb on - strandat 959.164 kb on + strandat 959.165 kb on - strandat 959.166 kb on + strandat 959.166 kb on + strandat 959.167 kb on - strandat 959.356 kb on + strandat 959.356 kb on + strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.371 kb on + strandat 959.400 kb on + strandat 959.401 kb on - strandat 959.545 kb on + strandat 959.597 kb on + strandat 959.598 kb on - strandat 959.607 kb on - strandat 959.608 kb on + strandat 959.608 kb on + strandat 959.609 kb on - strandat 959.609 kb on - strandat 959.609 kb on - strandat 959.632 kb on + strandat 959.803 kb on + strand, within SMc00978at 959.803 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.805 kb on + strand, within SMc00978at 959.806 kb on - strandat 959.806 kb on - strand, within SMc00978at 959.806 kb on - strand, within SMc00978at 959.806 kb on - strand, within SMc00978at 959.806 kb on - strand, within SMc00978at 959.938 kb on + strand, within SMc00978at 959.939 kb on - strand, within SMc00978at 960.081 kb on + strand, within SMc00978at 960.096 kb on - strand, within SMc00978

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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957,819 - SMc00980 0.39 -0.2
957,844 + SMc00980 0.41 -0.2
957,845 - SMc00980 0.41 +0.0
957,922 + SMc00980 0.49 -1.0
957,922 + SMc00980 0.49 +0.6
957,923 - SMc00980 0.49 +0.3
957,994 + SMc00980 0.56 +0.0
957,994 + SMc00980 0.56 -1.3
957,995 - SMc00980 0.56 -1.0
958,057 + SMc00980 0.62 -0.4
958,112 - SMc00980 0.67 -0.0
958,163 - SMc00980 0.72 +0.9
958,163 - SMc00980 0.72 -0.2
958,163 - SMc00980 0.72 -0.2
958,218 - SMc00980 0.78 +0.3
958,238 + SMc00980 0.80 +0.1
958,239 - SMc00980 0.80 -0.1
958,339 + SMc00980 0.90 -2.4
958,339 + SMc00980 0.90 +0.3
958,339 + SMc00980 0.90 -0.8
958,340 - SMc00980 0.90 +2.6
958,455 + -0.4
958,455 + +0.3
958,456 - -0.2
958,507 - +0.3
958,507 - -3.1
958,517 - +0.3
958,517 - -0.4
958,562 - -0.3
958,678 - +0.2
958,886 - SMc00979 0.35 +0.9
958,888 + SMc00979 0.36 -0.3
958,906 + SMc00979 0.40 +0.6
958,907 - SMc00979 0.40 +0.5
958,907 - SMc00979 0.40 +0.6
958,913 - SMc00979 0.42 -1.0
958,957 + SMc00979 0.52 +2.4
958,961 - SMc00979 0.53 +0.1
958,975 + SMc00979 0.57 -0.7
959,000 + SMc00979 0.63 +0.3
959,065 + SMc00979 0.78 +0.4
959,074 + SMc00979 0.80 +0.2
959,104 + SMc00979 0.88 +1.6
959,104 + SMc00979 0.88 +3.6
959,104 + SMc00979 0.88 +0.3
959,104 + SMc00979 0.88 +0.3
959,104 + SMc00979 0.88 +0.0
959,105 - SMc00979 0.88 -0.3
959,114 - -0.9
959,114 - -0.0
959,116 - -2.0
959,149 - +1.1
959,164 + +2.7
959,165 - +3.2
959,166 + +0.6
959,166 + +0.3
959,167 - +0.2
959,356 + +0.2
959,356 + +0.8
959,357 - +0.5
959,357 - +0.7
959,357 - +0.2
959,371 + -0.3
959,400 + +1.0
959,401 - -1.3
959,545 + -0.2
959,597 + -0.5
959,598 - -0.1
959,607 - -2.3
959,608 + +0.6
959,608 + +0.8
959,609 - +1.0
959,609 - -0.5
959,609 - +0.9
959,632 + +0.1
959,803 + SMc00978 0.18 +0.4
959,803 + SMc00978 0.18 +0.2
959,805 + SMc00978 0.18 +0.6
959,805 + SMc00978 0.18 -0.6
959,805 + SMc00978 0.18 +0.3
959,805 + SMc00978 0.18 -0.6
959,805 + SMc00978 0.18 +0.1
959,806 - +1.6
959,806 - SMc00978 0.18 -0.4
959,806 - SMc00978 0.18 +1.3
959,806 - SMc00978 0.18 +1.3
959,806 - SMc00978 0.18 +1.9
959,938 + SMc00978 0.31 +0.4
959,939 - SMc00978 0.32 -3.3
960,081 + SMc00978 0.46 -1.0
960,096 - SMc00978 0.47 -0.5

Or see this region's nucleotide sequence