Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1597 and SMa1600 are separated by 128 nucleotides SMa1600 and SMa1602 are separated by 279 nucleotides
SMa1597: SMa1597 - Pilus assembly chaperone, at 890,927 to 891,709
SMa1597
SMa1600: SMa1600 - Potassium efflux protein, at 891,838 to 893,592
SMa1600
SMa1602: SMa1602 - LysR family transcriptional regulator, at 893,872 to 894,747
SMa1602
Position (kb) 891
892
893
894 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 890.915 kb on + strand at 890.916 kb on - strand at 890.916 kb on - strand at 890.916 kb on - strand at 890.929 kb on - strand at 891.006 kb on + strand, within SMa1597 at 891.057 kb on + strand, within SMa1597 at 891.058 kb on - strand, within SMa1597 at 891.160 kb on + strand, within SMa1597 at 891.594 kb on + strand, within SMa1597 at 891.600 kb on - strand, within SMa1597 at 891.600 kb on - strand, within SMa1597 at 891.735 kb on + strand at 891.737 kb on + strand at 891.737 kb on + strand at 891.737 kb on + strand at 891.786 kb on + strand at 892.050 kb on - strand, within SMa1600 at 892.050 kb on - strand, within SMa1600 at 892.055 kb on + strand at 892.076 kb on + strand, within SMa1600 at 892.278 kb on + strand, within SMa1600 at 892.278 kb on + strand, within SMa1600 at 892.279 kb on - strand, within SMa1600 at 892.279 kb on - strand, within SMa1600 at 892.331 kb on + strand, within SMa1600 at 892.423 kb on - strand, within SMa1600 at 892.447 kb on - strand, within SMa1600 at 892.522 kb on + strand at 892.522 kb on + strand, within SMa1600 at 892.526 kb on + strand, within SMa1600 at 892.527 kb on - strand, within SMa1600 at 892.527 kb on - strand, within SMa1600 at 892.527 kb on - strand, within SMa1600 at 892.739 kb on + strand, within SMa1600 at 892.872 kb on - strand, within SMa1600 at 893.022 kb on - strand, within SMa1600 at 893.121 kb on + strand, within SMa1600 at 893.122 kb on - strand, within SMa1600 at 893.122 kb on - strand, within SMa1600 at 893.130 kb on + strand, within SMa1600 at 893.131 kb on - strand, within SMa1600 at 893.320 kb on - strand, within SMa1600 at 893.408 kb on + strand, within SMa1600 at 893.450 kb on - strand at 893.453 kb on + strand at 893.481 kb on - strand at 893.532 kb on + strand at 893.599 kb on - strand at 893.733 kb on - strand at 893.733 kb on - strand at 893.792 kb on - strand at 893.810 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 893.855 kb on - strand at 894.136 kb on + strand, within SMa1602 at 894.251 kb on + strand, within SMa1602 at 894.252 kb on - strand, within SMa1602 at 894.395 kb on + strand, within SMa1602 at 894.426 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.486 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.551 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.554 kb on + strand, within SMa1602 at 894.555 kb on - strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.580 kb on + strand, within SMa1602 at 894.581 kb on - strand, within SMa1602
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 890,915 + +0.5 890,916 - -0.5 890,916 - +1.3 890,916 - -1.9 890,929 - +0.7 891,006 + SMa1597 0.10 -1.6 891,057 + SMa1597 0.17 +1.3 891,058 - SMa1597 0.17 -0.2 891,160 + SMa1597 0.30 +2.6 891,594 + SMa1597 0.85 +1.3 891,600 - SMa1597 0.86 +1.9 891,600 - SMa1597 0.86 +0.9 891,735 + +0.4 891,737 + -0.9 891,737 + -0.4 891,737 + +0.0 891,786 + +0.3 892,050 - SMa1600 0.12 -1.0 892,050 - SMa1600 0.12 -0.0 892,055 + +4.4 892,076 + SMa1600 0.14 -0.3 892,278 + SMa1600 0.25 -0.3 892,278 + SMa1600 0.25 +0.4 892,279 - SMa1600 0.25 -0.6 892,279 - SMa1600 0.25 +1.0 892,331 + SMa1600 0.28 -0.4 892,423 - SMa1600 0.33 -0.3 892,447 - SMa1600 0.35 +0.5 892,522 + +5.0 892,522 + SMa1600 0.39 -0.0 892,526 + SMa1600 0.39 -0.9 892,527 - SMa1600 0.39 +2.9 892,527 - SMa1600 0.39 +2.0 892,527 - SMa1600 0.39 +0.1 892,739 + SMa1600 0.51 -0.3 892,872 - SMa1600 0.59 -0.4 893,022 - SMa1600 0.67 +2.0 893,121 + SMa1600 0.73 -0.2 893,122 - SMa1600 0.73 -0.2 893,122 - SMa1600 0.73 +1.2 893,130 + SMa1600 0.74 +0.0 893,131 - SMa1600 0.74 +0.1 893,320 - SMa1600 0.84 +0.8 893,408 + SMa1600 0.89 +1.3 893,450 - +2.1 893,453 + -0.2 893,481 - +2.8 893,532 + -1.5 893,599 - -0.7 893,733 - -0.2 893,733 - -0.2 893,792 - +2.0 893,810 - -0.5 893,855 - -0.6 893,855 - +0.9 893,855 - -0.6 893,855 - -1.2 894,136 + SMa1602 0.30 +0.2 894,251 + SMa1602 0.43 +0.4 894,252 - SMa1602 0.43 -0.1 894,395 + SMa1602 0.60 -0.4 894,426 + SMa1602 0.63 -0.1 894,486 + SMa1602 0.70 +1.3 894,486 + SMa1602 0.70 -0.4 894,551 + SMa1602 0.78 -0.4 894,551 + SMa1602 0.78 -1.0 894,554 + SMa1602 0.78 -1.0 894,554 + SMa1602 0.78 +1.4 894,554 + SMa1602 0.78 -0.3 894,555 - SMa1602 0.78 -1.9 894,580 + SMa1602 0.81 -0.1 894,580 + SMa1602 0.81 +0.4 894,581 - SMa1602 0.81 -0.8
Or see this region's nucleotide sequence