Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1073 and SMa1076 are separated by 576 nucleotides SMa1076 and SMa1077 are separated by 161 nucleotides SMa1077 and SMa1078 are separated by 29 nucleotides SMa1078 and SMa1079 are separated by 5 nucleotides
SMa1073: SMa1073 - TRm23b IS ATP-binding protein, at 586,541 to 587,278
SMa1073
SMa1076: SMa1076 - hypothetical protein, at 587,855 to 588,439
SMa1076
SMa1077: SMa1077 - Nex18 symbiotically induced protein, at 588,601 to 589,083
SMa1077
SMa1078: SMa1078 - hypothetical protein, at 589,113 to 589,337
SMa1078
SMa1079: SMa1079 - TspO/MBR family protein, at 589,343 to 589,885
SMa1079
Position (kb)
587
588
589 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 587.131 kb on + strand, within SMa1073 at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.532 kb on + strand at 587.549 kb on - strand at 587.627 kb on + strand at 587.627 kb on + strand at 587.627 kb on + strand at 587.628 kb on - strand at 587.628 kb on - strand at 587.628 kb on - strand at 587.628 kb on - strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.632 kb on - strand at 587.632 kb on - strand at 587.856 kb on + strand at 587.857 kb on - strand at 587.866 kb on + strand at 587.875 kb on + strand at 587.876 kb on - strand at 587.907 kb on + strand at 587.908 kb on - strand at 587.911 kb on + strand at 587.984 kb on + strand, within SMa1076 at 587.987 kb on - strand, within SMa1076 at 588.007 kb on - strand, within SMa1076 at 588.073 kb on - strand, within SMa1076 at 588.230 kb on + strand, within SMa1076 at 588.231 kb on - strand, within SMa1076 at 588.331 kb on + strand, within SMa1076 at 588.332 kb on - strand, within SMa1076 at 588.382 kb on + strand at 588.382 kb on + strand at 588.385 kb on + strand at 588.385 kb on + strand at 588.385 kb on + strand at 588.385 kb on + strand at 588.386 kb on - strand at 588.386 kb on - strand at 588.419 kb on - strand at 588.641 kb on + strand at 588.641 kb on + strand at 588.881 kb on - strand, within SMa1077 at 588.881 kb on - strand, within SMa1077 at 589.188 kb on - strand, within SMa1078 at 589.245 kb on + strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.246 kb on - strand, within SMa1078 at 589.256 kb on - strand, within SMa1078 at 589.342 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 587,131 + SMa1073 0.80 -0.0 587,408 + -0.1 587,408 + -0.1 587,408 + -0.3 587,408 + -0.6 587,408 + +0.1 587,408 + -0.2 587,409 - -1.0 587,409 - -0.6 587,409 - -1.2 587,409 - -1.0 587,409 - -3.2 587,532 + +0.1 587,549 - +0.4 587,627 + -0.0 587,627 + +0.4 587,627 + +0.4 587,628 - -0.2 587,628 - +2.2 587,628 - -0.7 587,628 - -0.7 587,631 + -2.9 587,631 + +1.9 587,631 + -0.3 587,631 + +1.9 587,631 + -1.5 587,632 - +0.5 587,632 - +0.7 587,856 + -0.6 587,857 - +0.0 587,866 + +0.1 587,875 + +0.8 587,876 - +0.5 587,907 + -0.1 587,908 - +0.7 587,911 + +0.5 587,984 + SMa1076 0.22 +0.2 587,987 - SMa1076 0.23 -1.0 588,007 - SMa1076 0.26 +0.0 588,073 - SMa1076 0.37 +1.0 588,230 + SMa1076 0.64 -1.1 588,231 - SMa1076 0.64 -0.9 588,331 + SMa1076 0.81 -0.7 588,332 - SMa1076 0.82 -0.0 588,382 + -0.3 588,382 + -1.1 588,385 + -1.6 588,385 + -0.2 588,385 + +1.5 588,385 + +1.0 588,386 - +0.0 588,386 - -0.0 588,419 - -2.3 588,641 + -3.2 588,641 + -0.4 588,881 - SMa1077 0.58 -0.2 588,881 - SMa1077 0.58 +0.5 589,188 - SMa1078 0.33 +0.9 589,245 + SMa1078 0.59 -1.6 589,246 - SMa1078 0.59 -0.2 589,246 - SMa1078 0.59 -2.0 589,246 - SMa1078 0.59 -0.7 589,256 - SMa1078 0.64 +0.4 589,342 + +0.6
Or see this region's nucleotide sequence