Experiment: Uridine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0868 and SMa0869 overlap by 4 nucleotides SMa0869 and SMa0870 are separated by 265 nucleotides SMa0870 and SMa0872 are separated by 687 nucleotides
SMa0868: SMa0868 - NodB chitooligosaccharide deacetylase, at 480,304 to 480,957
SMa0868
SMa0869: SMa0869 - acyltransferase, at 480,954 to 481,544
SMa0869
SMa0870: SMa0870 - NodD1 nod-box dependent transcriptional activator, at 481,810 to 482,736
SMa0870
SMa0872: SMa0872 - hypothetical protein, at 483,424 to 483,756
SMa0872
Position (kb) 481
482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 480.822 kb on - strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.889 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.891 kb on + strand, within SMa0868 at 480.892 kb on - strand at 480.937 kb on + strand at 480.938 kb on - strand at 480.942 kb on - strand at 480.958 kb on - strand at 481.138 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.273 kb on + strand, within SMa0869 at 481.276 kb on - strand, within SMa0869 at 481.316 kb on + strand, within SMa0869 at 481.316 kb on + strand, within SMa0869 at 481.317 kb on - strand, within SMa0869 at 481.518 kb on + strand at 481.519 kb on - strand at 481.546 kb on + strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.547 kb on - strand at 481.654 kb on - strand at 481.740 kb on + strand at 482.039 kb on + strand, within SMa0870 at 482.079 kb on - strand, within SMa0870 at 482.132 kb on + strand, within SMa0870 at 482.133 kb on - strand, within SMa0870 at 482.378 kb on - strand, within SMa0870 at 482.378 kb on - strand, within SMa0870 at 482.687 kb on + strand at 482.735 kb on - strand at 482.754 kb on - strand at 482.868 kb on - strand at 482.869 kb on + strand at 483.048 kb on + strand at 483.069 kb on + strand at 483.070 kb on - strand at 483.085 kb on - strand at 483.087 kb on - strand at 483.175 kb on - strand at 483.283 kb on + strand at 483.401 kb on - strand at 483.489 kb on + strand, within SMa0872 at 483.647 kb on + strand, within SMa0872 at 483.648 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872 at 483.654 kb on - strand, within SMa0872
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (N) remove 480,822 - SMa0868 0.79 -0.6 480,889 + SMa0868 0.89 -2.6 480,889 + SMa0868 0.89 -0.3 480,891 + SMa0868 0.90 -2.0 480,891 + SMa0868 0.90 -1.6 480,892 - +0.8 480,937 + +0.2 480,938 - -0.7 480,942 - +1.3 480,958 - +0.7 481,138 + SMa0869 0.31 -0.2 481,273 + SMa0869 0.54 +1.4 481,273 + SMa0869 0.54 +1.4 481,276 - SMa0869 0.54 -1.9 481,316 + SMa0869 0.61 -0.3 481,316 + SMa0869 0.61 +0.2 481,317 - SMa0869 0.61 +0.0 481,518 + -1.4 481,519 - +0.2 481,546 + +0.0 481,547 - +2.4 481,547 - -0.3 481,547 - -1.6 481,547 - -0.6 481,654 - -2.6 481,740 + +1.0 482,039 + SMa0870 0.25 +4.2 482,079 - SMa0870 0.29 -1.5 482,132 + SMa0870 0.35 +0.4 482,133 - SMa0870 0.35 -0.2 482,378 - SMa0870 0.61 -0.5 482,378 - SMa0870 0.61 -2.3 482,687 + -1.9 482,735 - -0.4 482,754 - -0.4 482,868 - -0.1 482,869 + -0.5 483,048 + +0.4 483,069 + +1.4 483,070 - +0.2 483,085 - -0.4 483,087 - -0.6 483,175 - -0.3 483,283 + +1.2 483,401 - -3.8 483,489 + SMa0872 0.20 -0.1 483,647 + SMa0872 0.67 +0.4 483,648 - SMa0872 0.67 +0.9 483,654 - SMa0872 0.69 -2.9 483,654 - SMa0872 0.69 -1.0
Or see this region's nucleotide sequence